C5H11orf52 (chromosome 5 C11orf52 homolog) - Rat Genome Database

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Gene: C5H11orf52 (chromosome 5 C11orf52 homolog) Canis lupus familiaris
Analyze
Symbol: C5H11orf52 (Ensembl: C11orf52)
Name: chromosome 5 C11orf52 homolog (Ensembl:chromosome 11 open reading frame 52)
RGD ID: 12297933
Description: ASSOCIATED WITH ataxia telangiectasia (ortholog); BH4-deficient hyperphenylalaninemia A (ortholog); Carney-Stratakis syndrome (ortholog); FOUND IN extracellular exosome (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: chromosome 5 open reading frame, human C11orf52; uncharacterized protein C11orf52 homolog
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1521,168,810 - 21,177,594 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl521,169,460 - 21,176,171 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha521,091,050 - 21,099,840 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0521,191,745 - 21,200,503 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl521,192,395 - 21,199,098 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1521,253,064 - 21,261,817 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0521,153,518 - 21,162,302 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0521,202,320 - 21,211,042 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
C5H11orf52
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1521,168,810 - 21,177,594 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl521,169,460 - 21,176,171 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha521,091,050 - 21,099,840 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0521,191,745 - 21,200,503 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl521,192,395 - 21,199,098 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1521,253,064 - 21,261,817 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0521,153,518 - 21,162,302 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0521,202,320 - 21,211,042 (-)NCBIUU_Cfam_GSD_1.0
C11orf52
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3811111,918,913 - 111,926,871 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl11111,918,032 - 111,926,871 (+)EnsemblGRCh38hg38GRCh38
GRCh3711111,789,637 - 111,797,595 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3611111,294,811 - 111,302,805 (+)NCBINCBI36Build 36hg18NCBI36
Celera11108,942,809 - 108,950,804 (+)NCBICelera
Cytogenetic Map11q23.1NCBI
HuRef11107,713,563 - 107,721,557 (+)NCBIHuRef
CHM1_111111,672,681 - 111,680,675 (+)NCBICHM1_1
T2T-CHM13v2.011111,929,157 - 111,937,115 (+)NCBIT2T-CHM13v2.0
2310030G06Rik
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39950,650,991 - 50,657,827 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl950,650,991 - 50,657,836 (-)EnsemblGRCm39 Ensembl
GRCm38950,739,691 - 50,746,527 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl950,739,691 - 50,746,536 (-)EnsemblGRCm38mm10GRCm38
MGSCv37950,547,796 - 50,554,626 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36950,491,921 - 50,498,751 (-)NCBIMGSCv36mm8
Celera948,026,806 - 48,033,663 (-)NCBICelera
Cytogenetic Map9A5.3NCBI
cM Map927.75NCBI
C8h11orf52
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8859,977,717 - 59,984,706 (-)NCBIGRCr8
mRatBN7.2851,081,342 - 51,088,333 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl851,081,342 - 51,094,533 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx856,587,168 - 56,594,140 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0854,866,099 - 54,873,071 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0852,730,352 - 52,737,326 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0855,164,736 - 55,174,613 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl855,164,736 - 55,171,718 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0853,761,298 - 53,768,954 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4854,093,696 - 54,100,678 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera850,628,922 - 50,635,919 (-)NCBICelera
Cytogenetic Map8q23NCBI
CUNH11orf52
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541213,634,794 - 13,640,962 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541213,635,088 - 13,640,604 (+)NCBIChiLan1.0ChiLan1.0
C9H11orf52
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v29112,666,049 - 112,677,384 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan111113,763,480 - 113,771,659 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v011106,805,449 - 106,813,628 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.111110,649,474 - 110,657,531 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl11110,649,474 - 110,657,531 (+)Ensemblpanpan1.1panPan2
CUNH11orf52
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494794,178,412 - 94,186,562 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049366122,518,908 - 2,526,691 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
C9H11orf52
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl939,647,797 - 39,655,223 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1939,646,890 - 39,655,229 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2944,437,464 - 44,445,778 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CUNH11orf52
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11103,268,896 - 103,276,550 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1103,268,992 - 103,276,695 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604322,704,766 - 22,712,342 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
CUNH11orf52
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247847,084,275 - 7,092,569 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247847,084,965 - 7,093,253 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in C5H11orf52
130 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 3 10 1 1 5 2 4 9
Low 2 5 11 5 6 5 1 4 8 8 1 6
Below cutoff 1

Sequence


RefSeq Acc Id: ENSCAFT00000046121   ⟹   ENSCAFP00000042584
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl521,169,460 - 21,176,171 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845003224   ⟹   ENSCAFP00845002557
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl521,192,395 - 21,199,098 (-)Ensembl
RefSeq Acc Id: XM_038475045   ⟹   XP_038330973
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1521,253,064 - 21,261,817 (-)NCBI
RefSeq Acc Id: XM_038536181   ⟹   XP_038392109
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0521,202,320 - 21,211,042 (-)NCBI
RefSeq Acc Id: XM_038600375   ⟹   XP_038456303
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0521,153,518 - 21,162,302 (-)NCBI
RefSeq Acc Id: XM_038664905   ⟹   XP_038520833
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0521,191,745 - 21,200,503 (-)NCBI
RefSeq Acc Id: XM_546525   ⟹   XP_546525
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1521,168,810 - 21,177,594 (-)NCBI
Dog10K_Boxer_Tasha521,091,050 - 21,099,840 (-)NCBI
Sequence:
RefSeq Acc Id: XP_546525   ⟸   XM_546525
- Peptide Label: isoform X1
- UniProtKB: A0A8P0NT98 (UniProtKB/TrEMBL),   A0A8C0Q9Q5 (UniProtKB/TrEMBL),   A0A8I3MMH1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000042584   ⟸   ENSCAFT00000046121
RefSeq Acc Id: XP_038330973   ⟸   XM_038475045
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038456303   ⟸   XM_038600375
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038520833   ⟸   XM_038664905
- Peptide Label: isoform X1
- UniProtKB: A0A8C0Q9Q5 (UniProtKB/TrEMBL),   A0A8I3MMH1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038392109   ⟸   XM_038536181
- Peptide Label: isoform X1
- UniProtKB: A0A8C0Q9Q5 (UniProtKB/TrEMBL),   A0A8I3MMH1 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845002557   ⟸   ENSCAFT00845003224

Promoters
RGD ID:13683160
Promoter ID:EPDNEW_C1228
Type:initiation region
Name:C5H11orf52_1
Description:chromosome 5 C11orf52 homolog
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1521,176,179 - 21,176,239EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000031968 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030013364 UniProtKB/TrEMBL
  ENSCAFG00040006335 UniProtKB/TrEMBL
  ENSCAFG00845001835 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000046121.2 UniProtKB/TrEMBL
  ENSCAFT00030024790.1 UniProtKB/TrEMBL
  ENSCAFT00040011808.1 UniProtKB/TrEMBL
  ENSCAFT00845003224 ENTREZGENE
  ENSCAFT00845003224.1 UniProtKB/TrEMBL
InterPro DUF4578 UniProtKB/TrEMBL
KEGG Report cfa:489407 UniProtKB/TrEMBL
NCBI Gene C5H11orf52 ENTREZGENE
PANTHER HYPOTHETICAL PROTEIN LOC689959 UniProtKB/TrEMBL
  PTHR37342 UniProtKB/TrEMBL
Pfam DUF4578 UniProtKB/TrEMBL
UniProt A0A8C0Q9Q5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3MMH1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0NT98 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:50434 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-09-12 C5H11orf52  chromosome 5 C11orf52 homolog    chromosome 5 open reading frame, human C11orf52  Symbol and/or name change 5135510 APPROVED