HS6ST3 (heparan sulfate 6-O-sulfotransferase 3) - Rat Genome Database

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Gene: HS6ST3 (heparan sulfate 6-O-sulfotransferase 3) Canis lupus familiaris
Analyze
Symbol: HS6ST3
Name: heparan sulfate 6-O-sulfotransferase 3
RGD ID: 12297746
Description: ENCODES a protein that exhibits heparan sulfate 6-O-sulfotransferase activity (ortholog); INVOLVED IN heparan sulfate proteoglycan biosynthetic process (ortholog); heparan sulfate proteoglycan biosynthetic process, enzymatic modification (ortholog); ASSOCIATED WITH Anal Atresia, Hypospadias, and Penoscrotal Inversion (ortholog); genetic disease (ortholog); holoprosencephaly 5 (ortholog); FOUND IN Golgi apparatus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: heparan-sulfate 6-O-sulfotransferase 3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12247,257,641 - 47,265,143 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2247,117,757 - 47,259,351 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2246,415,114 - 47,045,651 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02247,059,742 - 47,690,994 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.12246,722,627 - 47,354,975 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02246,755,655 - 47,387,212 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02246,792,123 - 47,424,056 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
HS6ST3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12247,257,641 - 47,265,143 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2247,117,757 - 47,259,351 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2246,415,114 - 47,045,651 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02247,059,742 - 47,690,994 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.12246,722,627 - 47,354,975 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02246,755,655 - 47,387,212 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02246,792,123 - 47,424,056 (+)NCBIUU_Cfam_GSD_1.0
HS6ST3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381396,090,107 - 96,839,562 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1396,090,107 - 96,839,562 (+)EnsemblGRCh38hg38GRCh38
GRCh371396,742,361 - 97,491,816 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361395,541,094 - 96,289,813 (+)NCBINCBI36Build 36hg18NCBI36
Build 341395,541,093 - 96,289,812NCBI
Celera1377,590,616 - 78,339,250 (+)NCBICelera
Cytogenetic Map13q32.1NCBI
HuRef1377,340,282 - 78,088,949 (+)NCBIHuRef
CHM1_11396,713,494 - 97,462,214 (+)NCBICHM1_1
T2T-CHM13v2.01395,294,349 - 96,043,658 (+)NCBIT2T-CHM13v2.0
Hs6st3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3914119,374,902 - 120,226,864 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl14119,375,753 - 120,107,227 (+)EnsemblGRCm39 Ensembl
GRCm3814119,137,516 - 119,869,815 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl14119,138,341 - 119,869,815 (+)EnsemblGRCm38mm10GRCm38
MGSCv3714119,537,487 - 120,269,037 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3614118,273,483 - 119,004,997 (+)NCBIMGSCv36mm8
Celera14117,692,032 - 118,432,138 (+)NCBICelera
Cytogenetic Map14E4NCBI
cM Map1462.67NCBI
Hs6st3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr815102,688,420 - 103,407,725 (+)NCBIGRCr8
mRatBN7.21596,281,502 - 97,000,804 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1596,281,646 - 97,000,462 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx15100,187,141 - 100,922,721 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.015101,319,502 - 102,029,799 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01598,248,330 - 98,971,892 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.015104,448,479 - 105,254,540 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl15104,448,600 - 105,254,214 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.015107,871,035 - 107,871,884 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.015108,635,603 - 108,663,069 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.415104,157,904 - 104,914,126NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1595,121,926 - 95,826,748 (+)NCBICelera
Cytogenetic Map15q24NCBI
Hs6st3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540413,468,128 - 14,128,707 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540413,461,906 - 14,129,089 (-)NCBIChiLan1.0ChiLan1.0
HS6ST3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21497,612,103 - 98,354,539 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11396,671,258 - 97,023,269 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01377,256,399 - 77,998,022 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11396,414,415 - 97,150,741 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1396,414,409 - 97,148,398 (+)Ensemblpanpan1.1panPan2
Hs6st3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945182,140,408 - 182,794,486 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647213,163,842 - 13,811,708 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647213,157,669 - 13,811,747 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HS6ST3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1165,516,097 - 66,187,242 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11165,516,180 - 66,193,410 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21173,192,012 - 73,199,496 (+)NCBISscrofa10.2Sscrofa10.2susScr3
HS6ST3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1374,840,589 - 75,576,397 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604631,277,947 - 32,026,474 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Hs6st3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248792,678,482 - 3,402,590 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248792,678,403 - 3,408,630 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in HS6ST3
66 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 6
Low 5 8 1 5
Below cutoff 5 14 6 6 6 6 6 5 8 5 6

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_022408096 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022408097 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022408098 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038431297 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038431298 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038431299 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038456779 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038506682 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038506683 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038506684 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038569882 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038569883 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038569884 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038634042 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038634043 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038634044 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000022 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000254 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000060 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000360 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000022 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSCAFT00000047711   ⟹   ENSCAFP00000038879
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2247,244,163 - 47,259,351 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000064788   ⟹   ENSCAFP00000059837
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2247,117,757 - 47,259,351 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000083167   ⟹   ENSCAFP00000054253
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2247,153,276 - 47,259,351 (+)Ensembl
RefSeq Acc Id: XM_038431297   ⟹   XP_038287225
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02247,059,742 - 47,690,994 (+)NCBI
RefSeq Acc Id: XM_038431298   ⟹   XP_038287226
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02247,059,742 - 47,690,994 (+)NCBI
RefSeq Acc Id: XM_038431299   ⟹   XP_038287227
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02247,059,742 - 47,690,994 (+)NCBI
RefSeq Acc Id: XM_038456779   ⟹   XP_038312707
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha2246,415,114 - 47,045,651 (+)NCBI
RefSeq Acc Id: XM_038506682   ⟹   XP_038362610
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12246,722,627 - 47,354,975 (+)NCBI
RefSeq Acc Id: XM_038506683   ⟹   XP_038362611
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12246,722,627 - 47,354,975 (+)NCBI
RefSeq Acc Id: XM_038506684   ⟹   XP_038362612
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12246,722,627 - 47,354,975 (+)NCBI
RefSeq Acc Id: XM_038569882   ⟹   XP_038425810
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02246,792,123 - 47,424,056 (+)NCBI
RefSeq Acc Id: XM_038569883   ⟹   XP_038425811
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02246,792,123 - 47,424,056 (+)NCBI
RefSeq Acc Id: XM_038569884   ⟹   XP_038425812
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02246,792,123 - 47,424,056 (+)NCBI
RefSeq Acc Id: XM_038634042   ⟹   XP_038489970
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02246,755,655 - 47,387,212 (+)NCBI
RefSeq Acc Id: XM_038634043   ⟹   XP_038489971
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02246,755,655 - 47,387,212 (+)NCBI
RefSeq Acc Id: XM_038634044   ⟹   XP_038489972
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02246,755,655 - 47,387,212 (+)NCBI
RefSeq Acc Id: ENSCAFP00000059837   ⟸   ENSCAFT00000064788
RefSeq Acc Id: ENSCAFP00000054253   ⟸   ENSCAFT00000083167
RefSeq Acc Id: ENSCAFP00000038879   ⟸   ENSCAFT00000047711
RefSeq Acc Id: XP_038362610   ⟸   XM_038506682
RefSeq Acc Id: XP_038362611   ⟸   XM_038506683
RefSeq Acc Id: XP_038362612   ⟸   XM_038506684
RefSeq Acc Id: XP_038489970   ⟸   XM_038634042
RefSeq Acc Id: XP_038489971   ⟸   XM_038634043
RefSeq Acc Id: XP_038489972   ⟸   XM_038634044
RefSeq Acc Id: XP_038287225   ⟸   XM_038431297
RefSeq Acc Id: XP_038287226   ⟸   XM_038431298
RefSeq Acc Id: XP_038287227   ⟸   XM_038431299
RefSeq Acc Id: XP_038312707   ⟸   XM_038456779
RefSeq Acc Id: XP_038425810   ⟸   XM_038569882
RefSeq Acc Id: XP_038425811   ⟸   XM_038569883
RefSeq Acc Id: XP_038425812   ⟸   XM_038569884


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000029934 Ensembl
NCBI Gene HS6ST3 ENTREZGENE