UPRT (uracil phosphoribosyltransferase homolog) - Rat Genome Database
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Gene: UPRT (uracil phosphoribosyltransferase homolog) Canis lupus familiaris
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Symbol: UPRT
Name: uracil phosphoribosyltransferase homolog
RGD ID: 12297649
Description: INVOLVED IN female pregnancy (ortholog); lactation (ortholog); response to insulin (ortholog); ASSOCIATED WITH autistic disorder (ortholog); Experimental Diabetes Mellitus (ortholog); syndromic X-linked intellectual disability Lubs type (ortholog); FOUND IN intracellular membrane-bounded organelle (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: elongation factor 1-alpha 1 pseudogene; LOC111094774; LOC111094775
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 EnsemblX58,543,425 - 58,575,926 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1X58,570,623 - 58,576,980 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
UPRT
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 EnsemblX58,543,425 - 58,575,926 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1X58,570,623 - 58,576,980 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
UPRT
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 EnsemblX75,156,388 - 75,304,885 (+)EnsemblGRCh38hg38GRCh38
GRCh38X75,156,369 - 75,304,897 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37X74,376,204 - 74,524,732 (+)NCBIGRCh37GRCh37hg19GRCh37
GRCh37X74,493,894 - 74,524,732 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X74,410,686 - 74,441,159 (+)NCBINCBI36hg18NCBI36
CeleraX74,777,320 - 74,808,158 (+)NCBI
Cytogenetic MapXq13.3NCBI
HuRefX68,128,874 - 68,159,480 (+)NCBIHuRef
CHM1_1X74,386,787 - 74,417,624 (+)NCBICHM1_1
Uprt
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X103,526,409 - 103,555,829 (+)NCBIGRCm39mm39
GRCm38X104,482,803 - 104,512,223 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX104,482,818 - 104,507,490 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X101,678,121 - 101,701,601 (+)NCBIGRCm37mm9NCBIm37
MGSCv36X100,685,501 - 100,708,981 (+)NCBImm8
CeleraX91,375,831 - 91,399,185 (+)NCBICelera
Cytogenetic MapXDNCBI
Uprt
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2X69,516,573 - 69,546,811 (+)NCBI
Rnor_6.0 EnsemblX75,382,598 - 75,407,217 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0X75,382,553 - 75,408,541 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0X76,184,934 - 76,210,907 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X92,511,044 - 92,535,135 (+)NCBIRGSC3.4rn4RGSC3.4
CeleraX70,870,490 - 70,896,599 (+)NCBICelera
Cytogenetic MapXq22NCBI
Uprt
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555621,385,611 - 1,415,336 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555621,385,617 - 1,415,277 (+)NCBIChiLan1.0ChiLan1.0
UPRT
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1X74,639,179 - 74,675,221 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX74,639,179 - 74,675,221 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0X64,524,889 - 64,561,439 (+)NCBIMhudiblu_PPA_v0panPan3
Uprt
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049366831,432,004 - 1,454,004 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
UPRT
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX60,426,975 - 60,451,480 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X60,426,955 - 60,448,174 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X68,687,968 - 68,709,136 (+)NCBISscrofa10.2Sscrofa10.2susScr3
UPRT
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X64,815,163 - 64,846,198 (+)NCBI
ChlSab1.1 EnsemblX64,815,183 - 64,849,547 (+)Ensembl
Uprt
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248365,473,129 - 5,502,276 (-)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 11 1 3 7 10 5
Low 5 5 11 6 5 6 3 6 5 8 1
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSCAFT00000027273   ⟹   ENSCAFP00000025365
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 EnsemblX58,543,425 - 58,575,926 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000083834   ⟹   ENSCAFP00000043876
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 EnsemblX58,543,425 - 58,575,926 (+)Ensembl
RefSeq Acc Id: XM_022415972   ⟹   XP_022271680
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1X58,570,623 - 58,576,980 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: XP_022271680   ⟸   XM_022415972
- Sequence:
RefSeq Acc Id: ENSCAFP00000043876   ⟸   ENSCAFT00000083834
RefSeq Acc Id: ENSCAFP00000025365   ⟸   ENSCAFT00000027273


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000017218 Ensembl, UniProtKB/TrEMBL
Ensembl Protein ENSCAFP00000025365 UniProtKB/TrEMBL
  ENSCAFP00000043876 UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000027273 UniProtKB/TrEMBL
  ENSCAFT00000083834 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.2020 UniProtKB/TrEMBL
InterPro PRibTrfase_dom UniProtKB/TrEMBL
  PRTase-like UniProtKB/TrEMBL
NCBI Gene UPRT ENTREZGENE
Superfamily-SCOP SSF53271 UniProtKB/TrEMBL
UniProt A0A5F4BSG3_CANLF UniProtKB/TrEMBL
  F1PRX5_CANLF UniProtKB/TrEMBL
VGNC ID VGNC:48158 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-01-14 UPRT  uracil phosphoribosyltransferase homolog  LOC111094774  elongation factor 1-alpha 1 pseudogene  Data Merged 737654 PROVISIONAL
2021-01-14 UPRT  uracil phosphoribosyltransferase homolog  LOC111094775  uracil phosphoribosyltransferase homolog  Data Merged 737654 PROVISIONAL