FOXL2 (forkhead box L2) - Rat Genome Database

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Gene: FOXL2 (forkhead box L2) Canis lupus familiaris
Analyze
Symbol: FOXL2
Name: forkhead box L2
RGD ID: 12296008
Description: ENCODES a protein that exhibits cysteine-type endopeptidase regulator activity involved in apoptotic process (ortholog); DNA binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); INVOLVED IN apoptotic DNA fragmentation (ortholog); embryonic eye morphogenesis (ortholog); extraocular skeletal muscle development (ortholog); ASSOCIATED WITH Blepharophimosis Syndrome Type 1 (ortholog); Blepharophimosis Syndrome Type 2 (ortholog); blepharophimosis, ptosis, and epicanthus inversus syndrome (ortholog); FOUND IN Flemming body (ortholog); nucleoplasm (ortholog); nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: forkhead box protein L2; LOW QUALITY PROTEIN: forkhead box protein L2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12335,145,856 - 35,147,185 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2335,138,304 - 35,139,560 (-)NCBI
ROS_Cfam_1.02335,688,052 - 35,689,311 (-)NCBI
UMICH_Zoey_3.12335,368,849 - 35,370,105 (-)NCBI
UNSW_CanFamBas_1.02335,433,498 - 35,434,751 (-)NCBI
UU_Cfam_GSD_1.02335,684,283 - 35,685,539 (-)NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
Flemming body  (ISO)
nucleoplasm  (ISO)
nucleus  (ISO)

References
Additional References at PubMed
PMID:26103686  


Genomics

Comparative Map Data
FOXL2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12335,145,856 - 35,147,185 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2335,138,304 - 35,139,560 (-)NCBI
ROS_Cfam_1.02335,688,052 - 35,689,311 (-)NCBI
UMICH_Zoey_3.12335,368,849 - 35,370,105 (-)NCBI
UNSW_CanFamBas_1.02335,433,498 - 35,434,751 (-)NCBI
UU_Cfam_GSD_1.02335,684,283 - 35,685,539 (-)NCBI
FOXL2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl3138,944,224 - 138,947,137 (-)EnsemblGRCh38hg38GRCh38
GRCh383138,944,224 - 138,947,137 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh373138,663,066 - 138,665,979 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 363140,145,756 - 140,148,491 (-)NCBINCBI36hg18NCBI36
Build 343140,145,765 - 140,148,499NCBI
Celera3137,089,495 - 137,092,452 (-)NCBI
Cytogenetic Map3q22.3NCBI
HuRef3136,038,560 - 136,041,476 (-)NCBIHuRef
CHM1_13138,627,041 - 138,629,957 (-)NCBICHM1_1
Foxl2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39998,837,660 - 98,840,179 (+)NCBIGRCm39mm39
GRCm39 Ensembl998,837,341 - 98,840,596 (+)Ensembl
GRCm38998,955,607 - 98,958,126 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl998,955,288 - 98,958,543 (+)EnsemblGRCm38mm10GRCm38
MGSCv37998,856,026 - 98,858,545 (+)NCBIGRCm37mm9NCBIm37
MGSCv36998,765,013 - 98,766,140 (+)NCBImm8
Celera998,493,332 - 98,496,090 (+)NCBICelera
Cytogenetic Map9E3.3NCBI
Foxl2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2899,512,971 - 99,514,500 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl899,513,303 - 99,514,427 (+)Ensembl
Rnor_6.08107,194,492 - 107,197,644 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8107,194,551 - 107,195,675 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08106,618,909 - 106,622,004 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48103,804,019 - 103,805,239 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.18103,818,892 - 103,825,932 (+)NCBI
Celera898,919,088 - 98,922,240 (+)NCBICelera
Cytogenetic Map8q31NCBI
Foxl2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495550183,965 - 84,476 (+)NCBIChiLan1.0ChiLan1.0
FOXL2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.13143,568,268 - 143,577,397 (-)NCBIpanpan1.1PanPan1.1panPan2
Mhudiblu_PPA_v03135,968,040 - 135,980,063 (-)NCBIMhudiblu_PPA_v0panPan3
Foxl2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560274,396,620 - 74,398,797 (-)NCBI
SpeTri2.0NW_0049365401,136,403 - 1,137,984 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FOXL2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1379,709,013 - 79,709,825 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11379,708,693 - 79,709,825 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21387,350,661 - 87,351,794 (-)NCBISscrofa10.2Sscrofa10.2susScr3
FOXL2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11551,595,806 - 51,598,124 (+)NCBI
ChlSab1.1 Ensembl1551,596,218 - 51,597,348 (+)Ensembl
Vero_WHO_p1.0NW_02366604124,582,612 - 24,585,160 (+)NCBI
Foxl2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473015,489,261 - 15,492,645 (-)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_014106522   ⟹   XP_013961997
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12335,145,856 - 35,147,185 (-)NCBI
Dog10K_Boxer_Tasha2335,138,304 - 35,139,560 (-)NCBI
Sequence:
RefSeq Acc Id: XM_038431631   ⟹   XP_038287559
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02335,688,052 - 35,689,311 (-)NCBI
RefSeq Acc Id: XM_038431632   ⟹   XP_038287560
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02335,688,052 - 35,689,311 (-)NCBI
RefSeq Acc Id: XM_038457467   ⟹   XP_038313395
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha2335,138,304 - 35,139,560 (-)NCBI
RefSeq Acc Id: XM_038508120   ⟹   XP_038364048
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12335,368,849 - 35,370,105 (-)NCBI
RefSeq Acc Id: XM_038508121   ⟹   XP_038364049
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12335,368,849 - 35,370,105 (-)NCBI
RefSeq Acc Id: XM_038570187   ⟹   XP_038426115
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02335,684,283 - 35,685,539 (-)NCBI
RefSeq Acc Id: XM_038570188   ⟹   XP_038426116
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02335,684,283 - 35,685,539 (-)NCBI
RefSeq Acc Id: XM_038634378   ⟹   XP_038490306
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02335,433,498 - 35,434,751 (-)NCBI
Reference Sequences
RefSeq Acc Id: XP_013961997   ⟸   XM_014106522
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_038364049   ⟸   XM_038508121
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038364048   ⟸   XM_038508120
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038490306   ⟸   XM_038634378
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038287560   ⟸   XM_038431632
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038287559   ⟸   XM_038431631
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038313395   ⟸   XM_038457467
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038426116   ⟸   XM_038570188
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038426115   ⟸   XM_038570187
- Peptide Label: isoform X1

Promoters
RGD ID:13687458
Promoter ID:EPDNEW_C5526
Type:single initiation site
Name:FOXL2_1
Description:forkhead box L2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12335,146,691 - 35,146,751EPDNEW

Additional Information

Database Acc Id Source(s)
NCBI Gene FOXL2 ENTREZGENE