C32H4orf36 (chromosome 32 C4orf36 homolog) - Rat Genome Database

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Gene: C32H4orf36 (chromosome 32 C4orf36 homolog) Canis lupus familiaris
Analyze
Symbol: C32H4orf36 (Ensembl: C4orf36)
Name: chromosome 32 C4orf36 homolog (Ensembl:chromosome 4 open reading frame 36)
RGD ID: 12291710
Description:
Type: protein-coding
RefSeq Status: MODEL
Previously known as: chromosome 32 open reading frame, human C4orf36; uncharacterized protein C4orf36 homolog
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13210,362,183 - 10,392,017 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3210,335,528 - 10,392,170 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3231,561,722 - 31,591,907 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03210,385,295 - 10,415,528 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3210,383,815 - 10,415,103 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13210,496,529 - 10,526,692 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03210,323,275 - 10,353,633 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03229,601,240 - 29,631,627 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
C32H4orf36
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13210,362,183 - 10,392,017 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3210,335,528 - 10,392,170 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3231,561,722 - 31,591,907 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03210,385,295 - 10,415,528 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3210,383,815 - 10,415,103 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13210,496,529 - 10,526,692 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03210,323,275 - 10,353,633 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03229,601,240 - 29,631,627 (+)NCBIUU_Cfam_GSD_1.0
C4orf36
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38486,876,205 - 86,936,204 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl486,876,205 - 86,892,422 (-)EnsemblGRCh38hg38GRCh38
GRCh38.p14 Ensembl486,886,472 - 86,936,178 (-)EnsemblGRCh38hg38GRCh38
GRCh37487,797,358 - 87,813,575 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36488,016,382 - 88,032,599 (-)NCBINCBI36Build 36hg18NCBI36
Celera485,086,805 - 85,103,009 (-)NCBICelera
Cytogenetic Map4q21.3NCBI
HuRef483,542,250 - 83,558,464 (-)NCBIHuRef
CHM1_1487,773,837 - 87,791,111 (-)NCBICHM1_1
T2T-CHM13v2.0490,205,627 - 90,265,613 (-)NCBIT2T-CHM13v2.0
1700016H13Rik
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395103,796,449 - 103,803,898 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5103,795,905 - 103,803,876 (-)EnsemblGRCm39 Ensembl
GRCm385103,648,583 - 103,656,032 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5103,648,039 - 103,656,010 (-)EnsemblGRCm38mm10GRCm38
MGSCv375104,077,606 - 104,084,751 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365103,888,895 - 103,896,034 (-)NCBIMGSCv36mm8
Celera5100,952,801 - 100,959,912 (-)NCBICelera
Cytogenetic Map5E5NCBI
cM Map550.45NCBI
C14h4orf36
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8146,363,170 - 6,370,479 (+)NCBIGRCr8
mRatBN7.2146,058,581 - 6,065,848 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl146,058,581 - 6,065,847 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx146,027,730 - 6,035,036 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0147,327,981 - 7,335,287 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0146,025,792 - 6,033,122 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0147,581,189 - 7,636,823 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl147,581,189 - 7,636,822 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0147,609,873 - 7,611,192 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.0147,559,461 - 7,560,448 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4147,222,291 - 7,230,296 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera146,198,302 - 6,205,552 (+)NCBICelera
Cytogenetic Map14p22NCBI
CUNH4orf36
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554742,935,017 - 2,937,271 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554742,934,400 - 2,939,999 (+)NCBIChiLan1.0ChiLan1.0
C3H4orf36
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2384,904,151 - 84,911,161 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1485,161,252 - 85,173,171 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0479,191,018 - 79,239,311 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1489,909,051 - 89,926,449 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl489,919,937 - 89,926,449 (-)Ensemblpanpan1.1panPan2
CUNH4orf36
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405285279,480 - 320,776 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936920263,286 - 266,665 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936920263,257 - 266,769 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
C8H4orf36
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl8131,969,291 - 131,976,753 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.18131,969,371 - 132,023,739 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.28141,244,386 - 141,288,918 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CUNH4orf36
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1735,257,412 - 35,263,122 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl735,254,501 - 35,262,261 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603713,952,304 - 13,957,598 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
CUNH4orf36
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248723,455,986 - 3,459,545 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248723,455,943 - 3,459,549 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in C32H4orf36
527 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium
Low 8
Below cutoff 5 5 21 5 6 5 6 5 12 10 6

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_014109972 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038444067 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038444068 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038444069 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038462121 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038462122 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038462123 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038518464 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038518465 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038518466 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038582208 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038582209 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038582210 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038646398 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038646399 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038646400 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000032 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000324 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000077 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000366 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000032 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCAFT00000047465   ⟹   ENSCAFP00000035924
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl3210,335,528 - 10,392,170 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845044012   ⟹   ENSCAFP00845034489
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl3210,383,815 - 10,415,103 (-)Ensembl
RefSeq Acc Id: XM_038444067   ⟹   XP_038299995
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.03210,385,295 - 10,415,500 (-)NCBI
RefSeq Acc Id: XM_038444068   ⟹   XP_038299996
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.03210,385,295 - 10,415,528 (-)NCBI
RefSeq Acc Id: XM_038444069   ⟹   XP_038299997
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.03210,385,295 - 10,415,522 (-)NCBI
RefSeq Acc Id: XM_038462121   ⟹   XP_038318049
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha3231,561,750 - 31,591,907 (+)NCBI
RefSeq Acc Id: XM_038462122   ⟹   XP_038318050
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha3231,561,722 - 31,591,907 (+)NCBI
RefSeq Acc Id: XM_038462123   ⟹   XP_038318051
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha3231,561,728 - 31,591,907 (+)NCBI
RefSeq Acc Id: XM_038518464   ⟹   XP_038374392
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.13210,496,529 - 10,526,664 (-)NCBI
RefSeq Acc Id: XM_038518465   ⟹   XP_038374393
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.13210,496,529 - 10,526,692 (-)NCBI
RefSeq Acc Id: XM_038518466   ⟹   XP_038374394
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.13210,496,529 - 10,526,685 (-)NCBI
RefSeq Acc Id: XM_038582208   ⟹   XP_038438136
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.03229,601,268 - 29,631,627 (+)NCBI
RefSeq Acc Id: XM_038582209   ⟹   XP_038438137
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.03229,601,240 - 29,631,627 (+)NCBI
RefSeq Acc Id: XM_038582210   ⟹   XP_038438138
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.03229,601,246 - 29,631,627 (+)NCBI
RefSeq Acc Id: XM_038646398   ⟹   XP_038502326
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.03210,323,275 - 10,353,605 (-)NCBI
RefSeq Acc Id: XM_038646399   ⟹   XP_038502327
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.03210,323,275 - 10,353,633 (-)NCBI
RefSeq Acc Id: XM_038646400   ⟹   XP_038502328
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.03210,323,275 - 10,353,627 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: ENSCAFP00000035924   ⟸   ENSCAFT00000047465
RefSeq Acc Id: XP_038374393   ⟸   XM_038518465
RefSeq Acc Id: XP_038374394   ⟸   XM_038518466
RefSeq Acc Id: XP_038374392   ⟸   XM_038518464
RefSeq Acc Id: XP_038502327   ⟸   XM_038646399
RefSeq Acc Id: XP_038502328   ⟸   XM_038646400
RefSeq Acc Id: XP_038502326   ⟸   XM_038646398
RefSeq Acc Id: XP_038299996   ⟸   XM_038444068
- UniProtKB: A0A8I3S903 (UniProtKB/TrEMBL),   A0A8P0NBK6 (UniProtKB/TrEMBL),   A0A8C0REH6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038299997   ⟸   XM_038444069
- UniProtKB: A0A8I3S903 (UniProtKB/TrEMBL),   A0A8P0NBK6 (UniProtKB/TrEMBL),   A0A8C0REH6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038299995   ⟸   XM_038444067
- UniProtKB: A0A8I3S903 (UniProtKB/TrEMBL),   A0A8P0NBK6 (UniProtKB/TrEMBL),   A0A8C0REH6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038318050   ⟸   XM_038462122
- UniProtKB: A0A8I3S903 (UniProtKB/TrEMBL),   A0A8P0NBK6 (UniProtKB/TrEMBL),   A0A8C0REH6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038318051   ⟸   XM_038462123
- UniProtKB: A0A8I3S903 (UniProtKB/TrEMBL),   A0A8P0NBK6 (UniProtKB/TrEMBL),   A0A8C0REH6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038318049   ⟸   XM_038462121
- UniProtKB: A0A8I3S903 (UniProtKB/TrEMBL),   A0A8P0NBK6 (UniProtKB/TrEMBL),   A0A8C0REH6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038438137   ⟸   XM_038582209
- UniProtKB: A0A8C0REH6 (UniProtKB/TrEMBL),   A0A8I3S903 (UniProtKB/TrEMBL),   A0A8P0NBK6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038438138   ⟸   XM_038582210
- UniProtKB: A0A8C0REH6 (UniProtKB/TrEMBL),   A0A8I3S903 (UniProtKB/TrEMBL),   A0A8P0NBK6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038438136   ⟸   XM_038582208
- UniProtKB: A0A8C0REH6 (UniProtKB/TrEMBL),   A0A8I3S903 (UniProtKB/TrEMBL),   A0A8P0NBK6 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845034489   ⟸   ENSCAFT00845044012


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000009448 UniProtKB/TrEMBL
  ENSCAFG00000030276 Ensembl
  ENSCAFG00030006950 UniProtKB/TrEMBL
  ENSCAFG00040025487 UniProtKB/TrEMBL
  ENSCAFG00845024944 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000015025.4 UniProtKB/TrEMBL
  ENSCAFT00030012800.1 UniProtKB/TrEMBL
  ENSCAFT00040047574.1 UniProtKB/TrEMBL
  ENSCAFT00845044012 ENTREZGENE
  ENSCAFT00845044012.1 UniProtKB/TrEMBL
InterPro DUF4522 UniProtKB/TrEMBL
NCBI Gene C32H4orf36 ENTREZGENE
PANTHER CHROMOSOME 4 C4ORF36 HOMOLOG UniProtKB/TrEMBL
  PTHR38002 UniProtKB/TrEMBL
Pfam DUF4522 UniProtKB/TrEMBL
UniProt A0A8C0REH6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3S903 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0NBK6 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:52557 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-09-12 C32H4orf36  chromosome 32 C4orf36 homolog    chromosome 32 open reading frame, human C4orf36  Symbol and/or name change 5135510 APPROVED