DEPDC1B (DEP domain containing 1B) - Rat Genome Database

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Gene: DEPDC1B (DEP domain containing 1B) Canis lupus familiaris
Analyze
Symbol: DEPDC1B
Name: DEP domain containing 1B
RGD ID: 12289259
Description: ENCODES a protein that exhibits fatty acid elongase activity (inferred); very-long-chain 3-ketoacyl-CoA synthase activity (inferred); INVOLVED IN cell migration (ortholog); ASSOCIATED WITH Acrodysostosis 2, with or without Hormone Resistance (ortholog); COVID-19 (ortholog); hepatocellular carcinoma (ortholog); FOUND IN integral component of membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: DEP domain-containing protein 1B
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1247,295,970 - 47,369,234 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl247,296,656 - 47,482,064 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha244,371,766 - 44,454,032 (-)NCBI
ROS_Cfam_1.0247,772,941 - 47,855,265 (-)NCBI
ROS_Cfam_1.0 Ensembl247,773,401 - 47,855,232 (-)Ensembl
UMICH_Zoey_3.1244,843,626 - 44,925,660 (-)NCBI
UNSW_CanFamBas_1.0245,622,925 - 45,705,207 (-)NCBI
UU_Cfam_GSD_1.0246,481,956 - 46,564,080 (-)NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:34119232  


Genomics

Comparative Map Data
DEPDC1B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1247,295,970 - 47,369,234 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl247,296,656 - 47,482,064 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha244,371,766 - 44,454,032 (-)NCBI
ROS_Cfam_1.0247,772,941 - 47,855,265 (-)NCBI
ROS_Cfam_1.0 Ensembl247,773,401 - 47,855,232 (-)Ensembl
UMICH_Zoey_3.1244,843,626 - 44,925,660 (-)NCBI
UNSW_CanFamBas_1.0245,622,925 - 45,705,207 (-)NCBI
UU_Cfam_GSD_1.0246,481,956 - 46,564,080 (-)NCBI
DEPDC1B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38560,596,912 - 60,700,166 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl560,596,912 - 60,700,190 (-)EnsemblGRCh38hg38GRCh38
GRCh37559,892,739 - 59,995,993 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36559,928,496 - 60,031,713 (-)NCBINCBI36hg18NCBI36
Build 34559,928,496 - 60,031,713NCBI
Celera556,833,846 - 56,936,903 (-)NCBI
Cytogenetic Map5q12.1NCBI
HuRef556,850,495 - 56,954,045 (-)NCBIHuRef
CHM1_1559,892,397 - 59,995,471 (-)NCBICHM1_1
T2T-CHM13v2.0561,415,059 - 61,518,602 (-)NCBI
Depdc1b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3913108,452,562 - 108,526,100 (+)NCBIGRCm39mm39
GRCm39 Ensembl13108,452,866 - 108,544,316 (+)Ensembl
GRCm3813108,316,014 - 108,389,566 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl13108,316,332 - 108,407,782 (+)EnsemblGRCm38mm10GRCm38
MGSCv3713109,106,531 - 109,179,751 (+)NCBIGRCm37mm9NCBIm37
MGSCv3613109,437,084 - 109,510,306 (+)NCBImm8
Celera13112,655,500 - 112,730,861 (+)NCBICelera
Cytogenetic Map13D2.1NCBI
Depdc1b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2239,891,163 - 39,963,779 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl239,891,481 - 39,963,779 (+)Ensembl
Rnor_6.0239,980,796 - 40,069,982 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl240,000,313 - 40,069,975 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0259,075,277 - 59,147,317 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4239,632,210 - 39,700,199 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1239,552,625 - 39,619,745 (+)NCBI
Celera235,731,136 - 35,799,432 (+)NCBICelera
Cytogenetic Map2q14NCBI
Depdc1b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554467,792,756 - 7,858,615 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554467,792,778 - 7,857,218 (+)NCBIChiLan1.0ChiLan1.0
DEPDC1B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1554,940,401 - 55,046,660 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl554,951,596 - 55,045,820 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0553,300,423 - 53,406,947 (+)NCBIMhudiblu_PPA_v0panPan3
Depdc1b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213198,786,842 - 198,905,014 (+)NCBI
SpeTri2.0NW_0049364807,750,244 - 7,841,556 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DEPDC1B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1639,466,497 - 39,557,840 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11639,466,496 - 39,558,750 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21642,377,619 - 42,469,742 (-)NCBISscrofa10.2Sscrofa10.2susScr3
DEPDC1B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1456,770,728 - 56,882,062 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl456,770,727 - 56,863,006 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660495,256,122 - 5,372,172 (-)NCBIVero_WHO_p1.0
Depdc1b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248159,289,292 - 9,371,716 (+)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_0046248159,289,221 - 9,372,580 (+)NCBIHetGla_female_1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCAFT00000011441   ⟹   ENSCAFP00000010601
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl247,296,659 - 47,369,180 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000011448   ⟹   ENSCAFP00000010608
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl247,408,642 - 47,482,064 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000043018   ⟹   ENSCAFP00000042773
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl247,408,642 - 47,425,228 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000068046   ⟹   ENSCAFP00000046921
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl247,296,656 - 47,457,355 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000077540   ⟹   ENSCAFP00000051979
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl247,296,656 - 47,415,521 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000082498   ⟹   ENSCAFP00000051437
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl247,296,656 - 47,482,064 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845013251   ⟹   ENSCAFP00845010294
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl247,773,401 - 47,855,232 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845013293   ⟹   ENSCAFP00845010317
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl247,773,628 - 47,855,232 (-)Ensembl
RefSeq Acc Id: XM_038459366   ⟹   XP_038315294
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha244,371,766 - 44,454,032 (-)NCBI
RefSeq Acc Id: XM_038469869   ⟹   XP_038325797
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1244,843,626 - 44,925,660 (-)NCBI
RefSeq Acc Id: XM_038530677   ⟹   XP_038386605
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0246,481,956 - 46,564,080 (-)NCBI
RefSeq Acc Id: XM_038594898   ⟹   XP_038450826
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0245,622,925 - 45,705,207 (-)NCBI
RefSeq Acc Id: XM_038658974   ⟹   XP_038514902
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0247,772,941 - 47,855,265 (-)NCBI
Reference Sequences
RefSeq Acc Id: ENSCAFP00000010601   ⟸   ENSCAFT00000011441
RefSeq Acc Id: ENSCAFP00000010608   ⟸   ENSCAFT00000011448
RefSeq Acc Id: ENSCAFP00000051979   ⟸   ENSCAFT00000077540
RefSeq Acc Id: ENSCAFP00000046921   ⟸   ENSCAFT00000068046
RefSeq Acc Id: ENSCAFP00000042773   ⟸   ENSCAFT00000043018
RefSeq Acc Id: ENSCAFP00000051437   ⟸   ENSCAFT00000082498
RefSeq Acc Id: XP_038325797   ⟸   XM_038469869
RefSeq Acc Id: XP_038450826   ⟸   XM_038594898
RefSeq Acc Id: XP_038514902   ⟸   XM_038658974
RefSeq Acc Id: XP_038315294   ⟸   XM_038459366
RefSeq Acc Id: XP_038386605   ⟸   XM_038530677
RefSeq Acc Id: ENSCAFP00845010294   ⟸   ENSCAFT00845013251
RefSeq Acc Id: ENSCAFP00845010317   ⟸   ENSCAFT00845013293


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000007133 Ensembl
  ENSCAFG00845007512 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSCAFP00845010294 ENTREZGENE
  ENSCAFP00845010294.1 UniProtKB/TrEMBL
  ENSCAFP00845010317.1 UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00845013251 ENTREZGENE
  ENSCAFT00845013251.1 UniProtKB/TrEMBL
  ENSCAFT00845013293.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.10.10 UniProtKB/TrEMBL
  1.10.555.10 UniProtKB/TrEMBL
InterPro DEP_dom UniProtKB/TrEMBL
  Rho_GTPase_activation_prot UniProtKB/TrEMBL
  RhoGAP_dom UniProtKB/TrEMBL
  WH-like_DNA-bd_sf UniProtKB/TrEMBL
  WH_DNA-bd_sf UniProtKB/TrEMBL
NCBI Gene DEPDC1B ENTREZGENE
Pfam DEP UniProtKB/TrEMBL
  RhoGAP UniProtKB/TrEMBL
PROSITE DEP UniProtKB/TrEMBL
  RHOGAP UniProtKB/TrEMBL
SMART DEP UniProtKB/TrEMBL
Superfamily-SCOP SSF46785 UniProtKB/TrEMBL
  SSF48350 UniProtKB/TrEMBL
UniProt A0A8I3N5X8_CANLF UniProtKB/TrEMBL
  A0A8I3RTZ5_CANLF UniProtKB/TrEMBL
VGNC ID VGNC:39897 ENTREZGENE