UCK1 (uridine-cytidine kinase 1) - Rat Genome Database
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Gene: UCK1 (uridine-cytidine kinase 1) Canis lupus familiaris
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Symbol: UCK1
Name: uridine-cytidine kinase 1
RGD ID: 12288795
Description: ENCODES a protein that exhibits ATP binding (inferred); uridine kinase activity (inferred); INVOLVED IN CTP salvage (inferred); phosphorylation (inferred); UMP salvage (inferred); ASSOCIATED WITH Ehlers-Danlos syndrome classic type 1 (ortholog); nerve compression syndrome (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: LOW QUALITY PROTEIN: uridine-cytidine kinase 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl952,609,313 - 52,614,622 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1952,609,972 - 52,615,655 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IBA)
cytosol  (IBA)

Molecular Function

References

Genomics

Comparative Map Data
UCK1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl952,609,313 - 52,614,622 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1952,609,972 - 52,615,655 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
UCK1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl9131,523,801 - 131,531,264 (-)EnsemblGRCh38hg38GRCh38
GRCh389131,523,801 - 131,531,263 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh379134,399,188 - 134,406,650 (-)NCBIGRCh37GRCh37hg19GRCh37
GRCh379134,399,183 - 134,406,662 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 369133,389,012 - 133,396,476 (-)NCBINCBI36hg18NCBI36
Build 349131,428,744 - 131,436,209NCBI
Celera9104,939,363 - 104,946,841 (-)NCBI
Cytogenetic Map9q34.13NCBI
HuRef9103,893,800 - 103,901,279 (-)NCBIHuRef
CHM1_19134,548,581 - 134,556,053 (-)NCBICHM1_1
Uck1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39232,145,014 - 32,150,117 (-)NCBIGRCm39mm39
GRCm38232,255,002 - 32,260,105 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl232,255,002 - 32,260,159 (-)EnsemblGRCm38mm10GRCm38
MGSCv37232,110,522 - 32,115,625 (-)NCBIGRCm37mm9NCBIm37
MGSCv36232,077,011 - 32,082,070 (-)NCBImm8
Celera231,959,332 - 31,964,435 (-)NCBICelera
Cytogenetic Map2BNCBI
Uck1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2315,538,580 - 15,544,465 (-)NCBI
Rnor_6.0 Ensembl311,271,885 - 11,277,757 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0311,271,874 - 11,277,757 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0316,620,744 - 16,626,627 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4311,366,634 - 11,372,517 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1311,264,015 - 11,268,800 (-)NCBI
Celera310,283,446 - 10,289,273 (-)NCBICelera
Cytogenetic Map3p12NCBI
Uck1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555131,203,934 - 1,208,724 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555131,203,934 - 1,208,720 (-)NCBIChiLan1.0ChiLan1.0
UCK1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.19131,285,877 - 131,293,338 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9131,285,877 - 131,293,338 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v09102,646,056 - 102,653,525 (-)NCBIMhudiblu_PPA_v0panPan3
Uck1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_00493648718,267,878 - 18,271,406 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
UCK1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1271,448,364 - 271,453,816 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11271,448,362 - 271,453,811 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21305,456,743 - 305,462,182 (-)NCBISscrofa10.2Sscrofa10.2susScr3
UCK1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1126,612,306 - 6,634,326 (+)NCBI
ChlSab1.1 Ensembl126,612,378 - 6,618,968 (+)Ensembl
Uck1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247604,490,118 - 4,494,707 (+)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 5 5 18 2 6 2 6 6 12 8 10 6
Low 4 4 4
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_038487108 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038548985 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038548986 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038548987 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038612936 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038612937 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038612938 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038616804 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038616811 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038616820 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038678243 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038678244 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038678245 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000095 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000103 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000313 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCAFT00000031666   ⟹   ENSCAFP00000029480
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl952,609,928 - 52,614,622 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000078011   ⟹   ENSCAFP00000045401
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl952,609,313 - 52,612,461 (+)Ensembl
RefSeq Acc Id: XM_022423937   ⟹   XP_022279645
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1952,609,972 - 52,615,655 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: XP_022279645   ⟸   XM_022423937
- Sequence:
RefSeq Acc Id: ENSCAFP00000045401   ⟸   ENSCAFT00000078011
RefSeq Acc Id: ENSCAFP00000029480   ⟸   ENSCAFT00000031666
Protein Domains
PRK


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000019903 Ensembl, UniProtKB/TrEMBL
Ensembl Protein ENSCAFP00000029480 UniProtKB/TrEMBL
  ENSCAFP00000045401 UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000031666 UniProtKB/TrEMBL
  ENSCAFT00000078011 UniProtKB/TrEMBL
InterPro P-loop_NTPase UniProtKB/TrEMBL
  PRK/URK UniProtKB/TrEMBL
  UCK-1 UniProtKB/TrEMBL
  Uridine_kinase-like UniProtKB/TrEMBL
NCBI Gene UCK1 ENTREZGENE
PANTHER PTHR10285:SF66 UniProtKB/TrEMBL
Pfam PRK UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt A0A5F4BU79_CANLF UniProtKB/TrEMBL
  F1PH93_CANLF UniProtKB/TrEMBL
VGNC ID VGNC:58343 ENTREZGENE