LOC609612 (folate receptor alpha) - Rat Genome Database

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Gene: LOC609612 (folate receptor alpha) Canis lupus familiaris
Analyze
Symbol: LOC609612
Name: folate receptor alpha
RGD ID: 12287675
Description: ENCODES a protein that exhibits folic acid binding (ortholog); methotrexate binding (ortholog); INVOLVED IN folic acid metabolic process (ortholog); folic acid transport (ortholog); response to axon injury (ortholog); PARTICIPATES IN altered folate cycle metabolic pathway; folate cycle metabolic pathway; ASSOCIATED WITH cerebral folate receptor alpha deficiency (ortholog); Colonic Neoplasms (ortholog); Congenital Abnormalities (ortholog); FOUND IN anchored component of external side of plasma membrane (ortholog); anchored component of plasma membrane (ortholog); apical plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: folate receptor 1; folate receptor 1 (adult); FOLR1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12125,944,350 - 25,951,010 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2125,714,017 - 25,720,656 (-)NCBI
ROS_Cfam_1.02126,153,187 - 26,159,847 (-)NCBI
UMICH_Zoey_3.12125,944,449 - 25,951,109 (-)NCBI
UNSW_CanFamBas_1.02126,160,593 - 26,167,256 (-)NCBI
UU_Cfam_GSD_1.02126,062,191 - 26,068,851 (-)NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Molecular Pathway Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
LOC609612
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12125,944,350 - 25,951,010 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2125,714,017 - 25,720,656 (-)NCBI
ROS_Cfam_1.02126,153,187 - 26,159,847 (-)NCBI
UMICH_Zoey_3.12125,944,449 - 25,951,109 (-)NCBI
UNSW_CanFamBas_1.02126,160,593 - 26,167,256 (-)NCBI
UU_Cfam_GSD_1.02126,062,191 - 26,068,851 (-)NCBI
FOLR1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1172,189,558 - 72,196,323 (+)EnsemblGRCh38hg38GRCh38
GRCh381172,189,709 - 72,196,323 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371171,900,753 - 71,907,367 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361171,578,250 - 71,585,014 (+)NCBINCBI36hg18NCBI36
Build 341171,580,855 - 71,585,014NCBI
Celera1169,202,176 - 69,208,941 (+)NCBI
Cytogenetic Map11q13.4NCBI
HuRef1168,193,609 - 68,200,378 (+)NCBIHuRef
CHM1_11171,784,063 - 71,790,828 (+)NCBICHM1_1
Folr1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397101,507,538 - 101,519,995 (-)NCBIGRCm39mm39
GRCm39 Ensembl7101,507,538 - 101,519,995 (-)Ensembl
GRCm387101,858,331 - 101,870,788 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7101,858,331 - 101,870,788 (-)EnsemblGRCm38mm10GRCm38
MGSCv377109,006,845 - 109,019,197 (-)NCBIGRCm37mm9NCBIm37
MGSCv367101,732,152 - 101,744,504 (-)NCBImm8
Celera7102,230,147 - 102,242,481 (-)NCBICelera
Cytogenetic Map7E2NCBI
Folr1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21156,219,460 - 156,238,436 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl1156,219,460 - 156,230,667 (-)Ensembl
Rnor_6.01166,934,457 - 166,945,864 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1166,934,460 - 166,943,592 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01173,124,242 - 173,135,651 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41159,315,191 - 159,324,141 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11159,394,208 - 159,403,158 (-)NCBI
Celera1154,298,870 - 154,310,077 (-)NCBICelera
Cytogenetic Map1q32NCBI
Folr1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541419,187,388 - 19,197,728 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541419,188,830 - 19,197,728 (-)NCBIChiLan1.0ChiLan1.0
FOLR1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11170,492,039 - 70,498,665 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1170,492,039 - 70,498,665 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01167,268,721 - 67,275,498 (+)NCBIMhudiblu_PPA_v0panPan3
Folr1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494759,892,012 - 59,897,666 (+)NCBI
SpeTri2.0NW_0049364981,489,916 - 1,497,200 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FOLR1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl96,746,007 - 6,760,433 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.196,753,513 - 6,760,433 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.297,515,002 - 7,521,923 (+)NCBISscrofa10.2Sscrofa10.2susScr3
FOLR1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1163,405,513 - 63,413,372 (+)NCBI
ChlSab1.1 Ensembl163,406,597 - 63,413,352 (+)Ensembl
Vero_WHO_p1.0NW_02366604362,470,494 - 62,476,997 (-)NCBI
Folr1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248174,830,164 - 4,850,565 (-)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 5 22 6 6 6 6 12 10 6
Low 5 6 8
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005633554 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022407744 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038430259 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038430260 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038430261 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038505587 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038505588 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038505589 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038568767 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038568768 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038568769 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038632940 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038632941 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038632942 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_846900 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000021 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000238 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000059 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000057 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000021 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_005633554   ⟹   XP_005633611
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12125,944,350 - 25,951,009 (-)NCBI
Dog10K_Boxer_Tasha2125,714,017 - 25,720,655 (-)NCBI
Sequence:
RefSeq Acc Id: XM_022407744   ⟹   XP_022263452
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12125,944,350 - 25,951,010 (-)NCBI
Dog10K_Boxer_Tasha2125,714,017 - 25,720,656 (-)NCBI
Sequence:
RefSeq Acc Id: XM_038430259   ⟹   XP_038286187
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02126,153,187 - 26,159,846 (-)NCBI
RefSeq Acc Id: XM_038430260   ⟹   XP_038286188
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02126,153,187 - 26,159,847 (-)NCBI
RefSeq Acc Id: XM_038430261   ⟹   XP_038286189
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02126,153,187 - 26,159,846 (-)NCBI
RefSeq Acc Id: XM_038505587   ⟹   XP_038361515
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12125,944,449 - 25,951,108 (-)NCBI
RefSeq Acc Id: XM_038505588   ⟹   XP_038361516
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12125,944,449 - 25,951,109 (-)NCBI
RefSeq Acc Id: XM_038505589   ⟹   XP_038361517
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12125,944,449 - 25,951,108 (-)NCBI
RefSeq Acc Id: XM_038568767   ⟹   XP_038424695
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02126,062,191 - 26,068,850 (-)NCBI
RefSeq Acc Id: XM_038568768   ⟹   XP_038424696
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02126,062,191 - 26,068,851 (-)NCBI
RefSeq Acc Id: XM_038568769   ⟹   XP_038424697
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02126,062,191 - 26,068,850 (-)NCBI
RefSeq Acc Id: XM_038632940   ⟹   XP_038488868
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02126,160,593 - 26,167,255 (-)NCBI
RefSeq Acc Id: XM_038632941   ⟹   XP_038488869
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02126,160,593 - 26,167,256 (-)NCBI
RefSeq Acc Id: XM_038632942   ⟹   XP_038488870
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02126,160,593 - 26,167,255 (-)NCBI
RefSeq Acc Id: XM_846900   ⟹   XP_851993
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12125,944,350 - 25,951,010 (-)NCBI
Dog10K_Boxer_Tasha2125,714,017 - 25,720,652 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: XP_851993   ⟸   XM_846900
- UniProtKB: E2QXC4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005633611   ⟸   XM_005633554
- UniProtKB: E2QXC4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_022263452   ⟸   XM_022407744
- Sequence:
RefSeq Acc Id: XP_038361516   ⟸   XM_038505588
RefSeq Acc Id: XP_038361517   ⟸   XM_038505589
RefSeq Acc Id: XP_038361515   ⟸   XM_038505587
RefSeq Acc Id: XP_038488869   ⟸   XM_038632941
RefSeq Acc Id: XP_038488870   ⟸   XM_038632942
RefSeq Acc Id: XP_038488868   ⟸   XM_038632940
RefSeq Acc Id: XP_038286188   ⟸   XM_038430260
RefSeq Acc Id: XP_038286189   ⟸   XM_038430261
RefSeq Acc Id: XP_038286187   ⟸   XM_038430259
RefSeq Acc Id: XP_038424696   ⟸   XM_038568768
RefSeq Acc Id: XP_038424697   ⟸   XM_038568769
RefSeq Acc Id: XP_038424695   ⟸   XM_038568767


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000005768 ENTREZGENE
Ensembl Protein ENSCAFP00000008644 ENTREZGENE
NCBI Gene LOC609612 ENTREZGENE
UniProt E2QXC4 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-01-12 LOC609612  folate receptor alpha  FOLR1  folate receptor alpha  Symbol and/or name change 5135510 APPROVED
2019-05-14 FOLR1  folate receptor alpha  FOLR1  folate receptor 1  Symbol and/or name change 5135510 APPROVED
2017-09-12 FOLR1  folate receptor 1  LOC609612  folate receptor alpha  Symbol and/or name change 5135510 APPROVED