LOC475722 (nucleophosmin pseudogene) - Rat Genome Database

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Gene: LOC475722 (nucleophosmin pseudogene) Canis lupus familiaris
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Symbol: LOC475722
Name: nucleophosmin pseudogene
RGD ID: 12286817
Description: ENCODES an pseudo that exhibits chromatin binding (inferred); histone binding (inferred); nucleic acid binding (inferred); INVOLVED IN chromatin remodeling (inferred); positive regulation of transcription by RNA polymerase II (inferred); regulation of centrosome duplication (inferred); FOUND IN centrosome (inferred); cytoplasm (inferred); nucleolus (inferred)
Type: pseudo
RefSeq Status: INFERRED
Related Functional Gene: NPM1  
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11727,149,883 - 27,151,177 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1726,946,007 - 26,947,300 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01727,717,524 - 27,718,817 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11727,019,657 - 27,020,950 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01727,087,125 - 27,088,418 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01727,296,790 - 27,298,083 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Genomics

Variants

.
Variants in LOC475722
22 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 4 7 5 3 5 1 1 8 1
Low 1 5 12 1 3 1 6 2 10 8 5
Below cutoff 3 3 1 1 1

Sequence


Protein Sequences
Ensembl Protein ENSCAFP00845020461.1
Protein Domains
Nucleophosmin C-terminal   Nucleoplasmin core


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00845014510 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00845025957.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.10.2100 UniProtKB/TrEMBL
  Nucleoplasmin core domain UniProtKB/TrEMBL
InterPro NPM1_C UniProtKB/TrEMBL
  Nucleoplasmin UniProtKB/TrEMBL
  Nucleoplasmin_core_dom UniProtKB/TrEMBL
  Nucleoplasmin_core_dom_sf UniProtKB/TrEMBL
NCBI Gene LOC475722 ENTREZGENE
PANTHER NUCLEOPHOSMIN UniProtKB/TrEMBL
  PTHR22747 UniProtKB/TrEMBL
Pfam NPM1-C UniProtKB/TrEMBL
  Nucleoplasmin UniProtKB/TrEMBL
Superfamily-SCOP SSF69203 UniProtKB/TrEMBL
UniProt A0A8I3NQX9_CANLF UniProtKB/TrEMBL