TRIM22 (tripartite motif containing 22) - Rat Genome Database

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Gene: TRIM22 (tripartite motif containing 22) Canis lupus familiaris
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Symbol: TRIM22
Name: tripartite motif containing 22
RGD ID: 12284753
Description: ENCODES a protein that exhibits identical protein binding (inferred); protein kinase binding (inferred); protein-macromolecule adaptor activity (inferred); INVOLVED IN positive regulation of DNA-binding transcription factor activity (ortholog); ASSOCIATED WITH Human Influenza (ortholog); neuronal ceroid lipofuscinosis (ortholog); FOUND IN cytoplasm (ortholog); nucleoplasm (ortholog); nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: E3 ubiquitin-protein ligase TRIM22; LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase TRIM22
RGD Orthologs
Human
Bonobo
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12128,677,196 - 28,696,413 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2128,682,973 - 28,695,185 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2128,462,465 - 28,475,958 (+)NCBI
ROS_Cfam_1.02129,507,880 - 29,521,677 (+)NCBI
UMICH_Zoey_3.12128,814,826 - 28,828,411 (+)NCBI
UNSW_CanFamBas_1.02129,020,853 - 29,034,328 (+)NCBI
UU_Cfam_GSD_1.02129,155,914 - 29,169,397 (+)NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
TRIM22
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12128,677,196 - 28,696,413 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2128,682,973 - 28,695,185 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2128,462,465 - 28,475,958 (+)NCBI
ROS_Cfam_1.02129,507,880 - 29,521,677 (+)NCBI
UMICH_Zoey_3.12128,814,826 - 28,828,411 (+)NCBI
UNSW_CanFamBas_1.02129,020,853 - 29,034,328 (+)NCBI
UU_Cfam_GSD_1.02129,155,914 - 29,169,397 (+)NCBI
TRIM22
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl115,689,697 - 5,737,089 (+)EnsemblGRCh38hg38GRCh38
GRCh38115,689,790 - 5,710,863 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37115,711,020 - 5,732,093 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36115,667,495 - 5,688,669 (+)NCBINCBI36hg18NCBI36
Build 34115,667,663 - 5,688,668NCBI
Celera115,830,018 - 5,851,196 (+)NCBI
Cytogenetic Map11p15.4NCBI
HuRef115,370,434 - 5,391,718 (+)NCBIHuRef
CHM1_1115,709,735 - 5,731,034 (+)NCBICHM1_1
TRIM22
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1115,504,864 - 5,526,730 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl115,504,864 - 5,526,730 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0115,824,176 - 5,844,990 (+)NCBIMhudiblu_PPA_v0panPan3
TRIM22
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1161,018,252 - 61,036,690 (-)NCBI
ChlSab1.1 Ensembl161,019,464 - 61,036,548 (-)Ensembl
Vero_WHO_p1.0NW_02366604364,970,585 - 64,989,104 (+)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 6 1 5
Low 5 1 22 6 6 5 6 5 6
Below cutoff 4 6 6 8

Sequence


Reference Sequences
RefSeq Acc Id: ENSCAFT00000010123   ⟹   ENSCAFP00000009390
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2128,687,729 - 28,695,185 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000074569   ⟹   ENSCAFP00000050421
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2128,682,973 - 28,695,185 (+)Ensembl
RefSeq Acc Id: XM_005633594   ⟹   XP_005633651
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12128,685,068 - 28,696,413 (+)NCBI
Sequence:
RefSeq Acc Id: XM_022407765   ⟹   XP_022263473
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12128,677,196 - 28,696,413 (+)NCBI
Sequence:
RefSeq Acc Id: XM_038430319   ⟹   XP_038286247
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02129,507,880 - 29,521,677 (+)NCBI
RefSeq Acc Id: XM_038506119   ⟹   XP_038362047
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12128,814,826 - 28,828,411 (+)NCBI
RefSeq Acc Id: XM_038568855   ⟹   XP_038424783
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02129,155,914 - 29,169,397 (+)NCBI
RefSeq Acc Id: XM_038633021   ⟹   XP_038488949
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02129,020,853 - 29,034,328 (+)NCBI
RefSeq Acc Id: XM_542402   ⟹   XP_542402
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12128,682,898 - 28,696,413 (+)NCBI
Dog10K_Boxer_Tasha2128,462,465 - 28,475,958 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_038286247 (Get FASTA)   NCBI Sequence Viewer  
  XP_038362047 (Get FASTA)   NCBI Sequence Viewer  
  XP_038424783 (Get FASTA)   NCBI Sequence Viewer  
  XP_038488949 (Get FASTA)   NCBI Sequence Viewer  
  XP_542402 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_542402   ⟸   XM_542402
- Peptide Label: isoform X1
- UniProtKB: E2QWA4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005633651   ⟸   XM_005633594
- Sequence:
RefSeq Acc Id: XP_022263473   ⟸   XM_022407765
- Sequence:
RefSeq Acc Id: ENSCAFP00000050421   ⟸   ENSCAFT00000074569
RefSeq Acc Id: ENSCAFP00000009390   ⟸   ENSCAFT00000010123
RefSeq Acc Id: XP_038362047   ⟸   XM_038506119
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038488949   ⟸   XM_038633021
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038286247   ⟸   XM_038430319
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038424783   ⟸   XM_038568855
- Peptide Label: isoform X1
Protein Domains
B box-type   B30.2/SPRY   RING-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000024867 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSCAFP00000009390 UniProtKB/TrEMBL
  ENSCAFP00000050421 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000010123 UniProtKB/TrEMBL
  ENSCAFT00000074569 UniProtKB/TrEMBL
Gene3D-CATH 2.60.120.920 UniProtKB/TrEMBL
  3.30.40.10 UniProtKB/TrEMBL
InterPro B30.2/SPRY UniProtKB/TrEMBL
  B30.2/SPRY_sf UniProtKB/TrEMBL
  Butyrophylin UniProtKB/TrEMBL
  ConA-like_dom UniProtKB/TrEMBL
  SPRY_dom UniProtKB/TrEMBL
  Znf_B-box UniProtKB/TrEMBL
  Znf_RING UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/TrEMBL
  Znf_RING_CS UniProtKB/TrEMBL
KEGG Report cfa:485284 UniProtKB/TrEMBL
NCBI Gene TRIM22 ENTREZGENE
Pfam SPRY UniProtKB/TrEMBL
  zf-B_box UniProtKB/TrEMBL
PRINTS BUTYPHLNCDUF UniProtKB/TrEMBL
PROSITE B302_SPRY UniProtKB/TrEMBL
  ZF_BBOX UniProtKB/TrEMBL
  ZF_RING_1 UniProtKB/TrEMBL
  ZF_RING_2 UniProtKB/TrEMBL
SMART BBOX UniProtKB/TrEMBL
  RING UniProtKB/TrEMBL
  SPRY UniProtKB/TrEMBL
Superfamily-SCOP SSF49899 UniProtKB/TrEMBL
UniProt A0A5F4C808_CANLF UniProtKB/TrEMBL
  E2QWA4 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:52856 ENTREZGENE