SWI5 (SWI5 homologous recombination repair protein) - Rat Genome Database

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Gene: SWI5 (SWI5 homologous recombination repair protein) Canis lupus familiaris
Analyze
Symbol: SWI5
Name: SWI5 homologous recombination repair protein
RGD ID: 12283850
Description: INVOLVED IN cellular response to ionizing radiation (ortholog); ASSOCIATED WITH developmental and epileptic encephalopathy (ortholog); early infantile epileptic encephalopathy (ortholog); genetic disease (ortholog); FOUND IN nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: DNA repair protein SWI5 homolog; SWI5 recombination repair homolog
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1955,229,510 - 55,234,645 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl955,229,550 - 55,234,489 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha954,424,421 - 54,429,643 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0956,151,581 - 56,156,803 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl956,151,593 - 56,156,938 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1954,911,478 - 54,916,705 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0955,226,120 - 55,231,344 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0955,317,624 - 55,322,848 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
SWI5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1955,229,510 - 55,234,645 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl955,229,550 - 55,234,489 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha954,424,421 - 54,429,643 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0956,151,581 - 56,156,803 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl956,151,593 - 56,156,938 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1954,911,478 - 54,916,705 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0955,226,120 - 55,231,344 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0955,317,624 - 55,322,848 (-)NCBIUU_Cfam_GSD_1.0
SWI5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389128,275,356 - 128,288,989 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9128,275,379 - 128,316,123 (+)EnsemblGRCh38hg38GRCh38
GRCh379131,037,635 - 131,051,268 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 369130,078,246 - 130,091,089 (+)NCBINCBI36Build 36hg18NCBI36
Build 349128,118,054 - 128,130,821NCBI
Celera9101,689,329 - 101,702,173 (+)NCBICelera
Cytogenetic Map9q34.11NCBI
HuRef9100,651,879 - 100,664,564 (+)NCBIHuRef
CHM1_19131,189,448 - 131,202,290 (+)NCBICHM1_1
T2T-CHM13v2.09140,482,470 - 140,496,104 (+)NCBIT2T-CHM13v2.0
Swi5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39232,168,817 - 32,178,154 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl232,168,828 - 32,178,087 (-)EnsemblGRCm39 Ensembl
GRCm38232,278,805 - 32,288,136 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl232,278,816 - 32,288,075 (-)EnsemblGRCm38mm10GRCm38
MGSCv37232,134,336 - 32,143,588 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36232,100,826 - 32,110,022 (-)NCBIMGSCv36mm8
Celera231,983,292 - 31,992,544 (-)NCBICelera
Cytogenetic Map2BNCBI
cM Map222.09NCBI
Swi5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8335,972,436 - 35,981,658 (-)NCBIGRCr8
mRatBN7.2315,574,687 - 15,583,760 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl315,564,715 - 15,583,805 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx318,643,571 - 18,652,494 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0327,228,564 - 27,237,487 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0325,479,160 - 25,488,237 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0311,307,981 - 11,317,049 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl311,307,981 - 11,317,049 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0316,656,849 - 16,665,919 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4311,402,738 - 11,411,870 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera310,319,249 - 10,328,317 (-)NCBICelera
Cytogenetic Map3p12NCBI
Swi5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955570799,332 - 808,368 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955570799,332 - 808,368 (+)NCBIChiLan1.0ChiLan1.0
SWI5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21111,064,403 - 11,078,004 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1911,056,102 - 11,079,639 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0999,396,439 - 99,410,054 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19128,065,237 - 128,078,380 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9128,064,569 - 128,078,380 (+)Ensemblpanpan1.1panPan2
Swi5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947196,045,921 - 196,054,256 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648715,814,102 - 15,823,311 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648715,814,463 - 15,822,783 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SWI5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1268,720,355 - 268,726,521 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11268,720,232 - 268,726,527 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21302,710,680 - 302,716,860 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SWI5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1129,840,286 - 9,852,397 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660796,380,808 - 6,394,649 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Swi5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247606,581,575 - 6,588,233 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247606,581,471 - 6,588,294 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in SWI5
69 total Variants

Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCAFT00000035913   ⟹   ENSCAFP00000031223
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl955,229,550 - 55,234,489 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845051530   ⟹   ENSCAFP00845040434
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl956,151,593 - 56,156,648 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845051546   ⟹   ENSCAFP00845040445
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl956,151,625 - 56,156,938 (-)Ensembl
RefSeq Acc Id: XM_022423942   ⟹   XP_022279650
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1955,229,510 - 55,234,645 (-)NCBI
Dog10K_Boxer_Tasha954,424,421 - 54,429,643 (-)NCBI
Sequence:
RefSeq Acc Id: XM_038484537   ⟹   XP_038340465
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1954,911,478 - 54,916,705 (-)NCBI
RefSeq Acc Id: XM_038546062   ⟹   XP_038401990
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0955,317,624 - 55,322,848 (-)NCBI
RefSeq Acc Id: XM_038610089   ⟹   XP_038466017
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0955,226,120 - 55,231,344 (-)NCBI
RefSeq Acc Id: XM_038675150   ⟹   XP_038531078
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0956,151,581 - 56,156,803 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_022279650   ⟸   XM_022423942
- UniProtKB: A0A8I3PZ72 (UniProtKB/TrEMBL),   A0A8P0NLQ7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000031223   ⟸   ENSCAFT00000035913
RefSeq Acc Id: XP_038340465   ⟸   XM_038484537
RefSeq Acc Id: XP_038466017   ⟸   XM_038610089
RefSeq Acc Id: XP_038531078   ⟸   XM_038675150
- UniProtKB: A0A8I3PZ72 (UniProtKB/TrEMBL),   A0A8P0NLQ7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038401990   ⟸   XM_038546062
- UniProtKB: A0A8I3PZ72 (UniProtKB/TrEMBL),   A0A8P0NLQ7 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845040445   ⟸   ENSCAFT00845051546
RefSeq Acc Id: ENSCAFP00845040434   ⟸   ENSCAFT00845051530


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000023381 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00845029128 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000035913.4 UniProtKB/TrEMBL
  ENSCAFT00000106108.1 UniProtKB/TrEMBL
  ENSCAFT00845051530.1 UniProtKB/TrEMBL
  ENSCAFT00845051546 ENTREZGENE
  ENSCAFT00845051546.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.5.170 UniProtKB/TrEMBL
InterPro DNA-repair_Swi5 UniProtKB/TrEMBL
NCBI Gene SWI5 ENTREZGENE
PANTHER DNA REPAIR PROTEIN SWI5 HOMOLOG UniProtKB/TrEMBL
  PTHR28529 UniProtKB/TrEMBL
Pfam Swi5 UniProtKB/TrEMBL
UniProt A0A8I3PZ72 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3SC30_CANLF UniProtKB/TrEMBL
  A0A8P0NLQ7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0TKE1_CANLF UniProtKB/TrEMBL
VGNC ID VGNC:106612 ENTREZGENE