DEF6 (DEF6 guanine nucleotide exchange factor) - Rat Genome Database

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Gene: DEF6 (DEF6 guanine nucleotide exchange factor) Canis lupus familiaris
Analyze
Symbol: DEF6
Name: DEF6 guanine nucleotide exchange factor
RGD ID: 12282837
Description: INVOLVED IN vesicle-mediated transport to the plasma membrane (inferred); ASSOCIATED WITH genetic disease (ortholog); Immunodeficiency 87 and Autoimmunity (ortholog); proteasome-associated autoinflammatory syndrome 1 (ortholog); FOUND IN cell-cell junction (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: DEF6, guanine nucleotide exchange factor; differentially expressed in FDCP 6 homolog
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1124,463,512 - 4,483,544 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl124,463,913 - 4,483,556 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha124,478,730 - 4,499,661 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0124,800,619 - 4,821,496 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl124,802,218 - 4,821,508 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1124,459,470 - 4,482,912 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0124,540,563 - 4,561,489 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0124,640,733 - 4,661,670 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
DEF6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1124,463,512 - 4,483,544 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl124,463,913 - 4,483,556 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha124,478,730 - 4,499,661 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0124,800,619 - 4,821,496 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl124,802,218 - 4,821,508 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1124,459,470 - 4,482,912 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0124,540,563 - 4,561,489 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0124,640,733 - 4,661,670 (+)NCBIUU_Cfam_GSD_1.0
DEF6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38635,297,818 - 35,321,771 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl635,297,818 - 35,321,771 (+)EnsemblGRCh38hg38GRCh38
GRCh37635,265,595 - 35,289,548 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36635,373,573 - 35,397,526 (+)NCBINCBI36Build 36hg18NCBI36
Build 34635,373,572 - 35,397,524NCBI
Celera636,819,554 - 36,843,506 (+)NCBICelera
Cytogenetic Map6p21.31NCBI
HuRef634,986,813 - 35,010,534 (+)NCBIHuRef
CHM1_1635,267,635 - 35,291,597 (+)NCBICHM1_1
T2T-CHM13v2.0635,120,899 - 35,144,853 (+)NCBIT2T-CHM13v2.0
Def6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391728,426,752 - 28,447,582 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1728,426,752 - 28,447,582 (+)EnsemblGRCm39 Ensembl
GRCm381728,207,456 - 28,228,608 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1728,207,778 - 28,228,608 (+)EnsemblGRCm38mm10GRCm38
MGSCv371728,344,723 - 28,365,553 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361727,935,419 - 27,956,188 (+)NCBIMGSCv36mm8
Celera1728,761,659 - 28,782,259 (+)NCBICelera
Cytogenetic Map17A3.3NCBI
cM Map1714.64NCBI
Def6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8206,270,323 - 6,291,724 (+)NCBIGRCr8
mRatBN7.2206,268,579 - 6,290,030 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl206,268,601 - 6,289,961 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx206,981,182 - 7,002,247 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0206,343,008 - 6,364,079 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0206,822,253 - 6,843,219 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0207,788,120 - 7,809,011 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl207,788,084 - 7,809,560 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0209,988,008 - 10,010,102 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4206,391,694 - 6,469,830 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1206,448,811 - 6,470,576 (+)NCBI
Celera207,825,022 - 7,845,913 (+)NCBICelera
Cytogenetic Map20p12NCBI
Def6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554373,252,028 - 3,278,237 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554373,252,028 - 3,275,512 (+)NCBIChiLan1.0ChiLan1.0
DEF6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2549,764,669 - 49,790,260 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1645,634,176 - 45,658,230 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0634,860,220 - 34,884,371 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1635,955,912 - 35,980,388 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl635,956,162 - 35,980,027 (+)Ensemblpanpan1.1panPan2
Def6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494640,037,366 - 40,056,319 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647623,903,693 - 23,921,426 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647623,903,917 - 23,922,927 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DEF6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl731,193,858 - 31,216,414 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1731,191,788 - 31,216,436 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2736,220,769 - 36,244,783 (-)NCBISscrofa10.2Sscrofa10.2susScr3
DEF6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11736,799,402 - 36,826,731 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1736,799,370 - 36,826,405 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604435,212,906 - 35,241,662 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Def6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475422,092,585 - 22,124,787 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475422,092,579 - 22,124,804 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in DEF6
164 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 6 4
Low 5 5 19 4 4 2 10 10 6
Below cutoff 3 2 2 6 2 8

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_014118384 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038491598 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038491599 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038491600 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038491601 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038553820 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038553821 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038553822 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038553823 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038617677 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038617678 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038617679 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038617680 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038682611 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038682617 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038682620 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038683280 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038683281 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038683282 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038683283 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038683284 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000012 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000123 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000012 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000357 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000012 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSCAFT00000002028   ⟹   ENSCAFP00000001876
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl124,463,913 - 4,483,556 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000092076   ⟹   ENSCAFP00000065810
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl124,463,913 - 4,483,556 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845051064   ⟹   ENSCAFP00845040031
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl124,802,218 - 4,821,508 (+)Ensembl
RefSeq Acc Id: XM_014118384   ⟹   XP_013973859
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1124,463,512 - 4,483,544 (+)NCBI
Dog10K_Boxer_Tasha124,479,959 - 4,499,661 (+)NCBI
Sequence:
RefSeq Acc Id: XM_038491598   ⟹   XP_038347526
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1124,460,040 - 4,482,912 (+)NCBI
RefSeq Acc Id: XM_038491599   ⟹   XP_038347527
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1124,460,695 - 4,482,912 (+)NCBI
RefSeq Acc Id: XM_038491600   ⟹   XP_038347528
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1124,459,470 - 4,482,912 (+)NCBI
RefSeq Acc Id: XM_038491601   ⟹   XP_038347529
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1124,459,470 - 4,482,912 (+)NCBI
RefSeq Acc Id: XM_038553820   ⟹   XP_038409748
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0124,641,303 - 4,661,670 (+)NCBI
RefSeq Acc Id: XM_038553821   ⟹   XP_038409749
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0124,641,962 - 4,661,670 (+)NCBI
RefSeq Acc Id: XM_038553822   ⟹   XP_038409750
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0124,640,733 - 4,661,670 (+)NCBI
RefSeq Acc Id: XM_038553823   ⟹   XP_038409751
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0124,640,733 - 4,661,670 (+)NCBI
RefSeq Acc Id: XM_038617677   ⟹   XP_038473605
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0124,541,133 - 4,561,489 (+)NCBI
RefSeq Acc Id: XM_038617678   ⟹   XP_038473606
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0124,541,790 - 4,561,489 (+)NCBI
RefSeq Acc Id: XM_038617679   ⟹   XP_038473607
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0124,540,563 - 4,561,489 (+)NCBI
RefSeq Acc Id: XM_038617680   ⟹   XP_038473608
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0124,540,563 - 4,561,489 (+)NCBI
RefSeq Acc Id: XM_038682611   ⟹   XP_038538539
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha124,479,300 - 4,499,661 (+)NCBI
RefSeq Acc Id: XM_038682617   ⟹   XP_038538545
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha124,478,730 - 4,499,661 (+)NCBI
RefSeq Acc Id: XM_038682620   ⟹   XP_038538548
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha124,478,730 - 4,499,661 (+)NCBI
RefSeq Acc Id: XM_038683280   ⟹   XP_038539208
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0124,800,619 - 4,820,813 (+)NCBI
RefSeq Acc Id: XM_038683281   ⟹   XP_038539209
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0124,800,619 - 4,820,813 (+)NCBI
RefSeq Acc Id: XM_038683282   ⟹   XP_038539210
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0124,800,619 - 4,820,813 (+)NCBI
RefSeq Acc Id: XM_038683283   ⟹   XP_038539211
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0124,800,619 - 4,820,813 (+)NCBI
RefSeq Acc Id: XM_038683284   ⟹   XP_038539212
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0124,800,619 - 4,821,496 (+)NCBI
RefSeq Acc Id: XP_013973859   ⟸   XM_014118384
- Peptide Label: isoform X14
- UniProtKB: A0A8C0K155 (UniProtKB/TrEMBL),   A0A8C0RKZ8 (UniProtKB/TrEMBL),   A0A8P0S7I9 (UniProtKB/TrEMBL),   A0A8C0SQ92 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000065810   ⟸   ENSCAFT00000092076
RefSeq Acc Id: ENSCAFP00000001876   ⟸   ENSCAFT00000002028
RefSeq Acc Id: XP_038347528   ⟸   XM_038491600
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038347529   ⟸   XM_038491601
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038347526   ⟸   XM_038491598
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038347527   ⟸   XM_038491599
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038473607   ⟸   XM_038617679
- Peptide Label: isoform X9
RefSeq Acc Id: XP_038473608   ⟸   XM_038617680
- Peptide Label: isoform X10
RefSeq Acc Id: XP_038473605   ⟸   XM_038617677
- Peptide Label: isoform X8
RefSeq Acc Id: XP_038473606   ⟸   XM_038617678
- Peptide Label: isoform X8
RefSeq Acc Id: XP_038539212   ⟸   XM_038683284
- Peptide Label: isoform X4
- UniProtKB: A0A8C0SQ92 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038539209   ⟸   XM_038683281
- Peptide Label: isoform X1
- UniProtKB: A0A8I3QQQ3 (UniProtKB/TrEMBL),   A0A8C0SQ92 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038539210   ⟸   XM_038683282
- Peptide Label: isoform X2
- UniProtKB: A0A8P0PEC6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038539211   ⟸   XM_038683283
- Peptide Label: isoform X3
- UniProtKB: A0A8P0PEC6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038539208   ⟸   XM_038683280
- Peptide Label: isoform X1
- UniProtKB: A0A8I3QQQ3 (UniProtKB/TrEMBL),   A0A8C0SQ92 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038538545   ⟸   XM_038682617
- Peptide Label: isoform X15
- UniProtKB: A0A8P0PEC6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038538548   ⟸   XM_038682620
- Peptide Label: isoform X16
- UniProtKB: A0A8P0PEC6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038538539   ⟸   XM_038682611
- Peptide Label: isoform X14
- UniProtKB: A0A8C0K155 (UniProtKB/TrEMBL),   A0A8C0RKZ8 (UniProtKB/TrEMBL),   A0A8P0S7I9 (UniProtKB/TrEMBL),   A0A8C0SQ92 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038409750   ⟸   XM_038553822
- Peptide Label: isoform X12
- UniProtKB: A0A8P0PEC6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038409751   ⟸   XM_038553823
- Peptide Label: isoform X13
- UniProtKB: A0A8P0PEC6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038409748   ⟸   XM_038553820
- Peptide Label: isoform X11
- UniProtKB: A0A8C0K155 (UniProtKB/TrEMBL),   A0A8C0RKZ8 (UniProtKB/TrEMBL),   A0A8C0SQ92 (UniProtKB/TrEMBL),   A0A8P0S7I9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038409749   ⟸   XM_038553821
- Peptide Label: isoform X11
- UniProtKB: A0A8C0K155 (UniProtKB/TrEMBL),   A0A8C0RKZ8 (UniProtKB/TrEMBL),   A0A8C0SQ92 (UniProtKB/TrEMBL),   A0A8P0S7I9 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845040031   ⟸   ENSCAFT00845051064
Protein Domains
PH

Promoters
RGD ID:13685396
Promoter ID:EPDNEW_C3463
Type:multiple initiation site
Name:DEF6_1
Description:DEF6, guanine nucleotide exchange factor
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1124,463,922 - 4,463,982EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000001307 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030015601 UniProtKB/TrEMBL
  ENSCAFG00040015705 UniProtKB/TrEMBL
  ENSCAFG00845028897 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000002028.5 UniProtKB/TrEMBL
  ENSCAFT00000092076.2 UniProtKB/TrEMBL
  ENSCAFT00030028749.1 UniProtKB/TrEMBL
  ENSCAFT00040028871.1 UniProtKB/TrEMBL
  ENSCAFT00845051064 ENTREZGENE
  ENSCAFT00845051064.1 UniProtKB/TrEMBL
Gene3D-CATH 2.30.29.30 UniProtKB/TrEMBL
InterPro EF-hand-dom_pair UniProtKB/TrEMBL
  PH-like_dom_sf UniProtKB/TrEMBL
  PH_domain UniProtKB/TrEMBL
NCBI Gene DEF6 ENTREZGENE
PANTHER DIFFERENTIALLY EXPRESSED IN FDCP 6 HOMOLOG UniProtKB/TrEMBL
  SWAP-70 RECOMBINASE UniProtKB/TrEMBL
Pfam PF00169 UniProtKB/TrEMBL
PROSITE PH_DOMAIN UniProtKB/TrEMBL
SMART SM00233 UniProtKB/TrEMBL
Superfamily-SCOP PH domain-like UniProtKB/TrEMBL
  SSF47473 UniProtKB/TrEMBL
UniProt A0A8C0K155 ENTREZGENE
  A0A8C0RKZ8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0SQ92 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3QQQ3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0PEC6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0S7I9 ENTREZGENE
UniProt Secondary A0A8P0S7I9 UniProtKB/TrEMBL
VGNC ID VGNC:39874 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-01-29 DEF6  DEF6 guanine nucleotide exchange factor    DEF6, guanine nucleotide exchange factor  Symbol and/or name change 5135510 APPROVED