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Gene: RGN (regucalcin) Canis lupus familiaris

Analyze

Symbol:

RGN

Name:

regucalcin

RGD ID:

12280951

Description:

ENCODES a protein that exhibits gluconolactonase activity (ortholog); INVOLVED IN intracellular calcium ion homeostasis (ortholog); kidney development (ortholog); liver development (ortholog); ASSOCIATED WITH autistic disorder (ortholog); Chemical and Drug Induced Liver Injury (ortholog); Experimental Diabetes Mellitus (ortholog); FOUND IN cytoplasm (inferred); nucleus (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

regucalcin (senescence marker protein-30)

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	RGN (regucalcin)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Rgn (regucalcin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Rgn (regucalcin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Rgn (regucalcin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	RGN (regucalcin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Rgn (regucalcin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	RGN (regucalcin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	RGN (regucalcin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Rgn (regucalcin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

CanFam3.1 - Dog CanFam3.1 Assembly

Position:

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	X	40,697,292 - 40,715,491 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	X	40,698,768 - 40,715,490 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	X	15,074,578 - 15,090,960 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	X	40,818,343 - 40,849,916 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	X	40,833,166 - 40,849,918 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	X	40,806,174 - 40,837,694 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	X	40,793,810 - 40,825,378 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	X	40,886,864 - 40,918,439 (+)	NCBI		UU_Cfam_GSD_1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autistic disorder (ISO)

Chemical and Drug Induced Liver Injury (ISO)

Experimental Diabetes Mellitus (ISO)

Experimental Liver Cirrhosis (ISO)

Experimental Liver Neoplasms (ISO)

familial hyperlipidemia (ISO)

hepatocellular carcinoma (ISO)

immune dysregulation-polyendocrinopathy-enteropathy-X-linked syndrome (ISO)

kidney disease (ISO)

liver cirrhosis (ISO)

neurodegenerative disease (ISO)

Neurodevelopmental Disorders (ISO)

stomach cancer (ISO)

syndromic X-linked intellectual disability Lubs type (ISO)

X-linked epilepsy with variable learning disabilities and behavior disorders (ISO)

X-linked severe congenital neutropenia (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

intracellular calcium ion homeostasis (ISO)

kidney development (ISO)

L-ascorbic acid biosynthetic process (IBA,IEA)

liver development (ISO)

liver regeneration (ISO)

negative regulation of apoptotic process (ISO)

negative regulation of bone development (ISO)

negative regulation of calcium-dependent ATPase activity (ISO)

negative regulation of cyclic-nucleotide phosphodiesterase activity (ISO)

negative regulation of DNA biosynthetic process (ISO)

negative regulation of DNA catabolic process (ISO)

negative regulation of epithelial cell proliferation (ISO)

negative regulation of flagellated sperm motility (ISO)

negative regulation of GTPase activity (ISO)

negative regulation of macromolecule biosynthetic process (ISO)

negative regulation of nitric oxide biosynthetic process (ISO)

negative regulation of protein kinase activity (ISO)

negative regulation of protein phosphorylation (ISO)

negative regulation of RNA biosynthetic process (ISO)

positive regulation of ATP-dependent activity (ISO)

positive regulation of ATPase-coupled calcium transmembrane transporter activity (ISO)

positive regulation of fatty acid biosynthetic process (ISO)

positive regulation of glucose metabolic process (ISO)

positive regulation of GTPase activity (ISO)

positive regulation of phosphatase activity (ISO)

positive regulation of proteolysis involved in protein catabolic process (ISO)

positive regulation of superoxide dismutase activity (ISO)

positive regulation of triglyceride biosynthetic process (ISO)

regulation of calcium-mediated signaling (ISO)

spermatogenesis (ISO)

Cellular Component

cytoplasm (IEA)

nucleus (IEA)

Molecular Function

calcium ion binding (IBA,IEA)

enzyme regulator activity (IEA)

gluconolactonase activity (IBA,IEA,ISO)

hydrolase activity (IEA)

metal ion binding (IEA)

zinc ion binding (IEA)

References

Additional References at PubMed

PMID:22301074	PMID:30032202	PMID:33652881

Genomics

Comparative Map Data

RGN
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	X	40,697,292 - 40,715,491 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	X	40,698,768 - 40,715,490 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	X	15,074,578 - 15,090,960 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	X	40,818,343 - 40,849,916 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	X	40,833,166 - 40,849,918 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	X	40,806,174 - 40,837,694 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	X	40,793,810 - 40,825,378 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	X	40,886,864 - 40,918,439 (+)	NCBI		UU_Cfam_GSD_1.0

RGN
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	X	47,078,443 - 47,093,313 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	X	47,078,355 - 47,093,314 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	X	46,937,842 - 46,952,712 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	X	46,822,719 - 46,837,656 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	X	46,696,510 - 46,708,966	NCBI
Celera	X	51,129,720 - 51,148,035 (+)	NCBI		Celera
Cytogenetic Map	X	p11.3	NCBI
HuRef	X	44,651,176 - 44,667,384 (+)	NCBI		HuRef
CHM1_1	X	46,969,564 - 46,984,507 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	X	46,485,437 - 46,503,065 (+)	NCBI		T2T-CHM13v2.0

Rgn
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	X	20,413,980 - 20,428,328 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	X	20,416,026 - 20,428,328 (+)	Ensembl		GRCm39 Ensembl
GRCm38	X	20,549,766 - 20,562,089 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	X	20,549,787 - 20,562,089 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	X	20,126,944 - 20,139,213 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	X	19,706,777 - 19,719,046 (+)	NCBI		MGSCv36	mm8
Celera	X	18,681,357 - 18,693,626 (+)	NCBI		Celera
Cytogenetic Map	X	A1.3	NCBI
cM Map	X	16.04	NCBI

Rgn
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	X	4,172,537 - 4,190,112 (-)	NCBI		GRCr8
mRatBN7.2	X	1,619,030 - 1,634,456 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	X	1,619,032 - 1,634,450 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	X	1,653,062 - 1,668,461 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	X	5,128,761 - 5,144,164 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	X	1,444,046 - 1,459,469 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	X	1,833,484 - 1,848,904 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	X	1,833,492 - 1,848,904 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	X	2,626,525 - 2,641,949 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	X	13,037,171 - 13,052,846	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	X	2,182,952 - 2,198,371 (-)	NCBI		Celera
Cytogenetic Map	X	q11	NCBI

Rgn
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955516	955,680 - 978,910 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955516	958,416 - 978,829 (-)	NCBI	ChiLan1.0	ChiLan1.0

RGN
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	X	48,703,675 - 48,720,753 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	X	48,707,048 - 48,724,130 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	X	39,513,135 - 39,530,188 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	X	47,371,225 - 47,388,881 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	X	47,371,226 - 47,388,881 (+)	Ensembl	panpan1.1		panPan2

Rgn
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	X	33,032,122 - 33,050,817 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936502	12,872,824 - 12,891,506 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936502	12,872,938 - 12,891,270 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RGN
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	X	41,726,526 - 41,749,381 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	X	41,725,660 - 41,749,736 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	X	46,902,494 - 46,926,414 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

RGN
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	X	44,282,825 - 44,299,027 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	X	44,285,601 - 44,299,258 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666076	9,539,184 - 9,555,388 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Rgn
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624887	3,883,213 - 3,899,277 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624887	3,881,624 - 3,900,144 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in RGN
158 total Variants

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

adipose tissue	alimentary part of gastrointestinal system	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	reproductive system	respiratory system
6	5	5	23	22	16	6	6	6	6	33	22	12	14	10

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_022416227	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038449866	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038449867	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038449868	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038523324	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038523325	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038523326	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038587293	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038587294	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038587295	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038651789	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038651790	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038651791	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_538011	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AAEX04000146	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAHUQ010000372	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAQRD010000110	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAUVH010000175	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	REHQ01000039	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCAFT00000036741 ⟹ ENSCAFP00000032151

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	X	40,698,768 - 40,715,490 (+)	Ensembl

Ensembl Acc Id:

ENSCAFT00000092135 ⟹ ENSCAFP00000050207

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	X	40,698,768 - 40,715,490 (+)	Ensembl

Ensembl Acc Id:

ENSCAFT00845052737 ⟹ ENSCAFP00845041398

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	X	40,833,166 - 40,849,918 (+)	Ensembl

Ensembl Acc Id:

ENSCAFT00845052753 ⟹ ENSCAFP00845041413

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	X	40,833,166 - 40,849,918 (+)	Ensembl

RefSeq Acc Id:

XM_022416227 ⟹ XP_022271935

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	X	40,697,292 - 40,715,491 (+)	NCBI
Dog10K_Boxer_Tasha	X	15,074,578 - 15,090,960 (+)	NCBI

Sequence:

show sequence

TTCGTACGATTCTTCCAGGAGCCACGGAGGAGAGGGACAGCGTCGGGGGGTGCACTCCCCGGCC
CGCACCCCCAGCTGCTGCCACCCACCTGCTGAGCCGCCCTGCCCCCGCCCAGGCCTCTCTCCGC
GGCCCGACCTTGAGCCACTGGAAGGCGCCAGCCCGAGCACCCCCTTGACAATGTCTTCCATTAA
GATTGAGTGTGTTTTGCGGGAGAACTGCAGGTGCGGAGAGTCTCCGGTGTGGGAGGAGGCGGCC
AACTCTCTGCTCTTCGTAGATATTCCTGCGAAAAAGGTTTGCCGGTGGGATTCGCTCAGCAAGA
GCGTGCAGCACGTGACCGTGGATGCCCCCATTAGCTCTGTGGCCCTTCGCCAGGGAAGAGGCTA
TGTCGCCACCATTGGAACAAAGTTCTGTGCTTTGAACTGGGAAGATCAGTCAGCAGTTGCCCTG
GCCACAGTAGATAAAGACAAGAAAAACAATCGGTTCAATGATGGAAAGGTGGATCCCGCTGGAA
GATACTTTGCTGGCACCATGGCTGAGGAAACGGCCCCAGCAGTTCTGGAACGGCACCAGGGGTC
CCTGTACTCCCTCTTTCCTGATGGCCATGTGGAAAAGTATTTTGACCAGGTGGACATCTCCAAT
GGTTTGGATTGGTCCCTGGATCACAAGATCTTCTATTACATTGATAGTCTGTCCTACTCTGTGG
ATGCCTTTGACTATGACCTGCAGACGGGGAAGATCTCCAACCGCAGAAGTGTTTACAAGCTGGA
GAAAGAAGAACAAATTCCAGATGGAATGTGTATCGATACTGAGGGGAAGCTCTGGGTGGCCTGT
TACAATGGAGGAAGAGTGATTCGTTTGGATCCTGAGACAGGGAAAAGACTCCAAACTGTGAAGT
TACCTGTTGATAAAACAACTTCATGCTGCTTTGGAGGGAAGGACTACTCTGAAATGTATGTGAC
CTGTGCCCGGGATGGAATGGACCCTGAGAGTCTTCTGAAGCAGCCTGAAGCTGGTGGGATTTTC
AAGATAACTGGCCTTGGGGTCAAAGGAATTCCTCCCTATCCCTATGCAGGATGAATGGCAGGTC
TTCTTTCCTACTGGGAGAAATTTGAAGACACGTAGAAAATTCTAGAGCTGAAATTTCAATCTAG
TTACAAAACAAATTAAAGAAATGGTACTATTAACAGGCAAAATTAACGTTTTTTTTTTTTCATT
TTTAAGAGGTAGAGCATTTTAATAAGGGGTGACAGGTAGTTTTGATAACACACTAAGAGGCCTT
CTACAAAGGTATTACAGAAATATAAAGAATTGTTCAACTGTCAATCAGCCTCTACTCTTTGCAA
ATTGCTAGAAGGGGACTGGGGGTACTATATCTTTTATGCATTCCATACTTATTATACCTAAAGC
TTAAAAAAACTAATAAATAATTACCTTATAATGA

hide sequence

RefSeq Acc Id:

XM_038449866 ⟹ XP_038305794

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	X	40,833,056 - 40,849,916 (+)	NCBI

RefSeq Acc Id:

XM_038449867 ⟹ XP_038305795

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	X	40,818,343 - 40,849,916 (+)	NCBI

RefSeq Acc Id:

XM_038449868 ⟹ XP_038305796

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	X	40,818,343 - 40,849,916 (+)	NCBI

RefSeq Acc Id:

XM_038523324 ⟹ XP_038379252

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	X	40,820,877 - 40,837,694 (+)	NCBI

RefSeq Acc Id:

XM_038523325 ⟹ XP_038379253

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	X	40,806,174 - 40,837,694 (+)	NCBI

RefSeq Acc Id:

XM_038523326 ⟹ XP_038379254

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	X	40,806,174 - 40,837,694 (+)	NCBI

RefSeq Acc Id:

XM_038587293 ⟹ XP_038443221

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	X	40,901,606 - 40,918,439 (+)	NCBI

RefSeq Acc Id:

XM_038587294 ⟹ XP_038443222

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	X	40,886,864 - 40,918,439 (+)	NCBI

RefSeq Acc Id:

XM_038587295 ⟹ XP_038443223

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	X	40,886,864 - 40,918,439 (+)	NCBI

RefSeq Acc Id:

XM_038651789 ⟹ XP_038507717

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	X	40,808,545 - 40,825,378 (+)	NCBI

RefSeq Acc Id:

XM_038651790 ⟹ XP_038507718

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	X	40,793,810 - 40,825,378 (+)	NCBI

RefSeq Acc Id:

XM_038651791 ⟹ XP_038507719

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	X	40,793,810 - 40,825,378 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_022271935	(Get FASTA)	NCBI Sequence Viewer
	XP_038305794	(Get FASTA)	NCBI Sequence Viewer
	XP_038305795	(Get FASTA)	NCBI Sequence Viewer
	XP_038305796	(Get FASTA)	NCBI Sequence Viewer
	XP_038379252	(Get FASTA)	NCBI Sequence Viewer
	XP_038379253	(Get FASTA)	NCBI Sequence Viewer
	XP_038379254	(Get FASTA)	NCBI Sequence Viewer
	XP_038443221	(Get FASTA)	NCBI Sequence Viewer
	XP_038443222	(Get FASTA)	NCBI Sequence Viewer
	XP_038443223	(Get FASTA)	NCBI Sequence Viewer
	XP_038507717	(Get FASTA)	NCBI Sequence Viewer
	XP_038507718	(Get FASTA)	NCBI Sequence Viewer
	XP_038507719	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCAFP00000032151.2
	ENSCAFP00000050207.1
	ENSCAFP00040026158.1
	ENSCAFP00040026187.1
	ENSCAFP00845041398
	ENSCAFP00845041398.1
	ENSCAFP00845041413.1

RefSeq Acc Id:

XP_022271935 ⟸ XM_022416227

- UniProtKB:

A0A8C0L5N4 (UniProtKB/TrEMBL), A0A8C0SUE9 (UniProtKB/TrEMBL), A0A8I3Q7E2 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSSIKIECVLRENCRCGESPVWEEAANSLLFVDIPAKKVCRWDSLSKSVQHVTVDAPISSVALR
QGRGYVATIGTKFCALNWEDQSAVALATVDKDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLE
RHQGSLYSLFPDGHVEKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGKISNRRS
VYKLEKEEQIPDGMCIDTEGKLWVACYNGGRVIRLDPETGKRLQTVKLPVDKTTSCCFGGKDYS
EMYVTCARDGMDPESLLKQPEAGGIFKITGLGVKGIPPYPYAG

hide sequence

Ensembl Acc Id:

ENSCAFP00000050207 ⟸ ENSCAFT00000092135

Ensembl Acc Id:

ENSCAFP00000032151 ⟸ ENSCAFT00000036741

RefSeq Acc Id:

XP_038379254 ⟸ XM_038523326

RefSeq Acc Id:

XP_038379253 ⟸ XM_038523325

RefSeq Acc Id:

XP_038379252 ⟸ XM_038523324

RefSeq Acc Id:

XP_038507719 ⟸ XM_038651791

RefSeq Acc Id:

XP_038507718 ⟸ XM_038651790

RefSeq Acc Id:

XP_038507717 ⟸ XM_038651789

RefSeq Acc Id:	XP_038305796 ⟸ XM_038449868
- UniProtKB:	A0A8C0L5N4 (UniProtKB/TrEMBL), A0A8C0SUE9 (UniProtKB/TrEMBL), A0A8I3Q7E2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038305795 ⟸ XM_038449867
- UniProtKB:	A0A8C0L5N4 (UniProtKB/TrEMBL), A0A8C0SUE9 (UniProtKB/TrEMBL), A0A8I3Q7E2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038305794 ⟸ XM_038449866
- UniProtKB:	A0A8C0L5N4 (UniProtKB/TrEMBL), A0A8C0SUE9 (UniProtKB/TrEMBL), A0A8I3Q7E2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038443223 ⟸ XM_038587295
- UniProtKB:	A0A8C0L5N4 (UniProtKB/TrEMBL), A0A8C0SUE9 (UniProtKB/TrEMBL), A0A8I3Q7E2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038443222 ⟸ XM_038587294
- UniProtKB:	A0A8C0L5N4 (UniProtKB/TrEMBL), A0A8C0SUE9 (UniProtKB/TrEMBL), A0A8I3Q7E2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038443221 ⟸ XM_038587293
- UniProtKB:	A0A8C0L5N4 (UniProtKB/TrEMBL), A0A8C0SUE9 (UniProtKB/TrEMBL), A0A8I3Q7E2 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSCAFP00845041413 ⟸ ENSCAFT00845052753

Ensembl Acc Id:

ENSCAFP00845041398 ⟸ ENSCAFT00845052737

Protein Domains

SMP-30/Gluconolactonase/LRE-like region

Promoters

RGD ID:

13689301

Promoter ID:

EPDNEW_C7368

Type:

initiation region

Name:

RGN_1

Description:

regucalcin

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	X	40,698,776 - 40,698,836	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCAFG00000014821	Ensembl, UniProtKB/TrEMBL
	ENSCAFG00040016314	UniProtKB/TrEMBL
	ENSCAFG00845029776	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCAFT00000036741.4	UniProtKB/TrEMBL
	ENSCAFT00000092135.2	UniProtKB/TrEMBL
	ENSCAFT00040030104.1	UniProtKB/TrEMBL
	ENSCAFT00040030135.1	UniProtKB/TrEMBL
	ENSCAFT00845052737	ENTREZGENE
	ENSCAFT00845052737.1	UniProtKB/TrEMBL
	ENSCAFT00845052753.1	UniProtKB/TrEMBL
Gene3D-CATH	2.120.10.30	UniProtKB/TrEMBL
InterPro	6-blade_b-propeller_TolB-like	UniProtKB/TrEMBL
	Regucalcin	UniProtKB/TrEMBL
	SGL	UniProtKB/TrEMBL
	SMP-30	UniProtKB/TrEMBL
NCBI Gene	RGN	ENTREZGENE
PANTHER	REGUCALCIN	UniProtKB/TrEMBL
	REGUCALCIN	UniProtKB/TrEMBL
Pfam	SGL	UniProtKB/TrEMBL
PRINTS	REGUCALCIN	UniProtKB/TrEMBL
	SMP30FAMILY	UniProtKB/TrEMBL
Superfamily-SCOP	Calcium-dependent phosphotriesterase	UniProtKB/TrEMBL
UniProt	A0A8C0L5N4	ENTREZGENE
	A0A8C0SUE9	ENTREZGENE, UniProtKB/TrEMBL
	A0A8C0YZT8_CANLF	UniProtKB/TrEMBL
	A0A8I3Q7E2	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I3SCF7_CANLF	UniProtKB/TrEMBL
VGNC ID	VGNC:45516	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar

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