CCNB2 (cyclin B2) - Rat Genome Database

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Gene: CCNB2 (cyclin B2) Canis lupus familiaris
Analyze
Symbol: CCNB2
Name: cyclin B2
RGD ID: 12280907
Description: INVOLVED IN G2/MI transition of meiotic cell cycle (ortholog); in utero embryonic development (ortholog); negative regulation of meiotic cell cycle process involved in oocyte maturation (ortholog); ASSOCIATED WITH Bloom syndrome (ortholog); colon cancer (ortholog); COVID-19 (ortholog); FOUND IN centrosome (ortholog); cytoplasm (ortholog); microtubule cytoskeleton (ortholog)
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: G2/mitotic-specific cyclin-B2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13024,040,859 - 24,063,084 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3024,040,859 - 24,063,084 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3024,014,627 - 24,036,855 (+)NCBI
ROS_Cfam_1.03024,209,364 - 24,231,601 (+)NCBI
UMICH_Zoey_3.13024,134,552 - 24,156,769 (+)NCBI
UNSW_CanFamBas_1.03024,217,551 - 24,239,776 (+)NCBI
UU_Cfam_GSD_1.03024,361,281 - 24,383,523 (+)NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
CCNB2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13024,040,859 - 24,063,084 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3024,040,859 - 24,063,084 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3024,014,627 - 24,036,855 (+)NCBI
ROS_Cfam_1.03024,209,364 - 24,231,601 (+)NCBI
UMICH_Zoey_3.13024,134,552 - 24,156,769 (+)NCBI
UNSW_CanFamBas_1.03024,217,551 - 24,239,776 (+)NCBI
UU_Cfam_GSD_1.03024,361,281 - 24,383,523 (+)NCBI
CCNB2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1559,105,126 - 59,125,045 (+)EnsemblGRCh38hg38GRCh38
GRCh381559,105,146 - 59,125,045 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371559,397,345 - 59,417,244 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361557,184,612 - 57,204,536 (+)NCBINCBI36hg18NCBI36
Build 341557,184,611 - 57,204,535NCBI
Celera1536,285,270 - 36,305,194 (+)NCBI
Cytogenetic Map15q22.2NCBI
HuRef1536,219,537 - 36,239,475 (+)NCBIHuRef
CHM1_11559,515,271 - 59,535,219 (+)NCBICHM1_1
Ccnb2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39970,314,971 - 70,328,836 (-)NCBIGRCm39mm39
GRCm39 Ensembl970,314,974 - 70,328,829 (-)Ensembl
GRCm38970,407,689 - 70,421,554 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl970,407,692 - 70,421,547 (-)EnsemblGRCm38mm10GRCm38
MGSCv37970,255,496 - 70,269,361 (-)NCBIGRCm37mm9NCBIm37
MGSCv36970,206,853 - 70,220,718 (-)NCBImm8
Celera967,623,704 - 67,637,672 (-)NCBICelera
Cytogenetic Map9DNCBI
Ccnb2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2871,087,594 - 71,100,794 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl871,087,595 - 71,100,874 (-)Ensembl
Rnor_6.0876,847,972 - 76,861,165 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0876,221,508 - 76,233,944 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4874,892,108 - 74,906,181 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1874,911,162 - 74,925,235 (-)NCBI
Celera870,627,900 - 70,641,100 (+)NCBICelera
Cytogenetic Map8q24NCBI
Ccnb2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545015,559,022 - 15,581,760 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545015,558,874 - 15,587,456 (-)NCBIChiLan1.0ChiLan1.0
CCNB2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11556,382,391 - 56,402,299 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1556,382,391 - 56,402,299 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01538,075,106 - 38,095,699 (+)NCBIMhudiblu_PPA_v0panPan3
Ccnb2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640102,368,542 - 102,390,483 (+)NCBI
SpeTri2.0NW_00493647120,216,435 - 20,238,543 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CCNB2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1112,907,047 - 112,942,219 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11112,907,047 - 112,942,218 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21124,906,568 - 124,942,517 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CCNB2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12624,389,654 - 24,408,976 (-)NCBI
ChlSab1.1 Ensembl2624,389,642 - 24,409,346 (-)Ensembl
Vero_WHO_p1.0NW_023666048116,914,038 - 116,933,832 (+)NCBI
Ccnb2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462478112,875,215 - 12,905,878 (-)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 2 8
Low 3 7 6 6 6 6 5 2
Below cutoff 5 15 5 12 5 4

Sequence


Reference Sequences
RefSeq Acc Id: ENSCAFT00000026290   ⟹   ENSCAFP00000024416
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl3024,040,859 - 24,063,084 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000088089   ⟹   ENSCAFP00000052710
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl3024,040,983 - 24,063,084 (+)Ensembl
RefSeq Acc Id: NM_001313810   ⟹   NP_001300739
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.13024,040,859 - 24,063,084 (+)NCBI
Dog10K_Boxer_Tasha3024,014,627 - 24,036,855 (+)NCBI
ROS_Cfam_1.03024,209,365 - 24,231,592 (+)NCBI
UMICH_Zoey_3.13024,134,552 - 24,156,769 (+)NCBI
UNSW_CanFamBas_1.03024,217,551 - 24,239,776 (+)NCBI
UU_Cfam_GSD_1.03024,361,281 - 24,383,523 (+)NCBI
Sequence:
RefSeq Acc Id: XM_038441734   ⟹   XP_038297662
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.03024,209,364 - 24,231,601 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001300739 (Get FASTA)   NCBI Sequence Viewer  
  XP_038297662 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein CBX86236 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_001300739   ⟸   NM_001313810
- UniProtKB: E2R8B4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000052710   ⟸   ENSCAFT00000088089
RefSeq Acc Id: ENSCAFP00000024416   ⟸   ENSCAFT00000026290
RefSeq Acc Id: XP_038297662   ⟸   XM_038441734
- Peptide Label: isoform X1

Promoters
RGD ID:13688541
Promoter ID:EPDNEW_C6608
Type:initiation region
Name:CCNB2_1
Description:G2/mitotic-specific cyclin-B2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.13024,040,840 - 24,040,900EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000016600 Ensembl, ENTREZGENE
Ensembl Protein ENSCAFP00000024416 ENTREZGENE
Ensembl Transcript ENSCAFT00000026290 ENTREZGENE
NCBI Gene CCNB2 ENTREZGENE
UniProt E2R8B4 ENTREZGENE
VGNC ID VGNC:103665 ENTREZGENE