HOXC10 (homeobox C10) - Rat Genome Database

Name: HOXC10
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: HOXC10 (homeobox C10) Canis lupus familiaris

Analyze

Symbol:

HOXC10

Name:

homeobox C10

RGD ID:

12279493

Description:

ENCODES a protein that exhibits DNA binding (inferred); DNA-binding transcription activator activity, RNA polymerase II-specific (inferred); DNA-binding transcription factor activity, RNA polymerase II-specific (inferred); INVOLVED IN anterior/posterior pattern specification (ortholog); embryonic limb morphogenesis (ortholog); neuromuscular process (ortholog); ASSOCIATED WITH genetic disease (ortholog); Kyphoscoliosis (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN nuclear body (inferred); nucleoplasm (inferred); nucleus (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

homeobox protein Hox-C10

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	HOXC10 (homeobox C10)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Hoxc10 (homeobox C10)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Hoxc10 (homeo box C10)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Hoxc10 (homeobox C10)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	HOXC10 (homeobox C10)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Hoxc10 (homeobox C10)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	HOXC10 (homeobox C10)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	HOXC10 (homeobox C10)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Hoxc10 (homeobox C10)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

CanFam3.1 - Dog CanFam3.1 Assembly

Position:

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	27	1,272,272 - 1,277,411 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	27	1,273,131 - 1,323,370 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	27	44,972,213 - 44,976,533 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	27	1,276,751 - 1,281,074 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	27	1,275,931 - 1,280,977 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	27	1,294,448 - 1,298,772 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	27	1,275,967 - 1,280,296 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	27	45,375,816 - 45,380,136 (+)	NCBI		UU_Cfam_GSD_1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

Kyphoscoliosis (ISO)

Neurodevelopmental Disorders (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

anterior/posterior pattern specification (IEA,ISO)

embryonic limb morphogenesis (IEA,ISO)

negative regulation of cold-induced thermogenesis (IEA)

neuromuscular process (IEA,ISO)

positive regulation of transcription by RNA polymerase II (IEA)

proximal/distal pattern formation (IEA,ISO)

regulation of DNA-templated transcription (IEA)

regulation of transcription by RNA polymerase II (IEA)

skeletal system development (IEA,ISO)

spinal cord motor neuron cell fate specification (IEA,ISO)

Cellular Component

nuclear body (IEA)

nucleoplasm (IEA)

nucleus (IEA)

Molecular Function

DNA binding (IEA)

DNA-binding transcription activator activity, RNA polymerase II-specific (IEA)

DNA-binding transcription factor activity, RNA polymerase II-specific (IEA)

protein binding (ISO)

RNA polymerase II cis-regulatory region sequence-specific DNA binding (IEA)

RNA polymerase II transcription regulatory region sequence-specific DNA binding (IEA)

sequence-specific double-stranded DNA binding (IEA)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

HOXC10
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	27	1,272,272 - 1,277,411 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	27	1,273,131 - 1,323,370 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	27	44,972,213 - 44,976,533 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	27	1,276,751 - 1,281,074 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	27	1,275,931 - 1,280,977 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	27	1,294,448 - 1,298,772 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	27	1,275,967 - 1,280,296 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	27	45,375,816 - 45,380,136 (+)	NCBI		UU_Cfam_GSD_1.0

HOXC10
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	12	53,985,146 - 53,990,279 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	12	53,985,065 - 53,990,279 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	12	54,378,930 - 54,384,063 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	12	52,665,213 - 52,670,330 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	12	52,665,220 - 52,670,327	NCBI
Celera	12	54,028,565 - 54,033,680 (+)	NCBI		Celera
Cytogenetic Map	12	q13.13	NCBI
HuRef	12	51,416,659 - 51,421,773 (+)	NCBI		HuRef
CHM1_1	12	54,345,653 - 54,350,768 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	12	53,950,654 - 53,955,785 (+)	NCBI		T2T-CHM13v2.0

Hoxc10
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	15	102,875,231 - 102,880,333 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	15	102,875,231 - 102,880,328 (+)	Ensembl		GRCm39 Ensembl
GRCm38	15	102,966,796 - 102,971,898 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	15	102,966,796 - 102,971,893 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	15	102,797,296 - 102,802,152 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	15	102,794,899 - 102,799,755 (+)	NCBI		MGSCv36	mm8
Celera	15	105,127,796 - 105,132,646 (+)	NCBI		Celera
Cytogenetic Map	15	F3	NCBI
cM Map	15	58.03	NCBI

Hoxc10
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	135,982,222 - 135,987,442 (+)	NCBI		GRCr8
mRatBN7.2	7	134,103,741 - 134,108,966 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	134,103,643 - 134,108,966 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	7	135,859,132 - 135,864,346 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	138,088,515 - 138,093,726 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	138,074,491 - 138,079,716 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	144,577,578 - 144,582,802 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	144,577,465 - 144,582,622 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	7	142,368,850 - 142,374,159 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	7	141,717,910 - 141,734,613 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	7	141,808,802 - 141,813,297 (+)	NCBI
Celera	7	130,529,927 - 130,535,151 (+)	NCBI		Celera
Cytogenetic Map	7	q36	NCBI

Hoxc10
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955458	1,243,529 - 1,248,661 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955458	1,243,529 - 1,248,653 (+)	NCBI	ChiLan1.0	ChiLan1.0

HOXC10
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	10	40,195,618 - 40,201,937 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	12	40,192,386 - 40,198,918 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	12	34,764,956 - 34,770,088 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	12	35,553,262 - 35,558,393 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	12	35,553,262 - 35,558,393 (-)	Ensembl	panpan1.1		panPan2

Hoxc10
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	61,952,465 - 61,957,657 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936512	11,207,173 - 11,212,365 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936512	11,207,173 - 11,212,365 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

HOXC10
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	5	19,197,807 - 19,202,970 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	5	19,197,810 - 19,202,975 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	5	19,670,823 - 19,675,191 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

HOXC10
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	11	50,092,230 - 50,100,934 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	11	50,095,810 - 50,100,940 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666037	195,941,257 - 195,946,422 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Hoxc10
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624904	2,039,754 - 2,045,096 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624904	2,040,018 - 2,044,881 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in HOXC10
59 total Variants

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_038437836	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038514255	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038577833	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038640307	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_543626	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AAEX04000027	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAHUQ010000296	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAQRD010000069	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAUVH010000362	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	REHQ01000027	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCAFT00845032429 ⟹ ENSCAFP00845025355

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	27	1,275,931 - 1,280,977 (-)	Ensembl

RefSeq Acc Id:

XM_038437836 ⟹ XP_038293764

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	27	1,276,751 - 1,281,074 (-)	NCBI

RefSeq Acc Id:

XM_038514255 ⟹ XP_038370183

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	27	1,294,448 - 1,298,772 (-)	NCBI

RefSeq Acc Id:

XM_038577833 ⟹ XP_038433761

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	27	45,375,816 - 45,380,136 (+)	NCBI

RefSeq Acc Id:

XM_038640307 ⟹ XP_038496235

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	27	1,275,967 - 1,280,296 (-)	NCBI

RefSeq Acc Id:

XM_543626 ⟹ XP_543626

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	27	1,272,272 - 1,277,411 (-)	NCBI
Dog10K_Boxer_Tasha	27	44,972,213 - 44,976,533 (+)	NCBI

Sequence:

show sequence

GCCGCCCCTCCAGCCGCCCCCCCCCCGGATGGGGGAAAAAAAAAAGATGTCAGCTCCTCCGCCG
TAGTGTTGCTCCTTAAAAACCCCTCTCTCTGAAAATGACATGCCCTCGCAATGTGACTCCCAAC
TCGTTCGCGGAGCCCGGGGCCGCGCCGGGCGGAGCAGAGCGCTACGGCCGGGGCGCAGGCATGT
ACATGCAGCCTGGGAGTGACTTCAACTGCGGGGTGATGCGGGGCTGCGGGCTCGCGCCCTCGCT
CTCCAAGAGGGACGAGGGCGGCAGCCCCAACCTCGCCCTCAACACCTACCCGTCCTACCTCTCG
CAGCTGGACTCCTGGGGCGACCCCAAGGCCGCCTACCGCCTGGAGCAACCTGTTGGCAGGCCGC
TGTCCTCCTGCTCCTACCCACCTAGTGTCAAGGAGGAGAATGTCTGCTGCATGTACAGCGCGGA
GAAGCGGGCGAAAAGTGGCCCCGAGGCAGCCCTCTACGCCCACCCCCTGCAGGAGTCCTGCCTC
GGGGAGCACGAGGTGCCCGTGCCCAGCTACTACCGCGCCAGCCCCAGCTACTCCGCGCTGGACA
AGCCGCCCCACTGCGCCGGGGCCAACGACTTCGAGGCCCCCTTCGAGCCGCGGGCCAGCCTGCA
CCCGCGCGCCGAGCACCTGGAGTCGCCCCAGCTCGGGGGCAAAGTGAGTTTCCCCGAGACCCCC
AAGTCCGACAGCCAGACCCCTAGCCCCGGGGAGATCAAGACGGAGCAGAGCCTGGCGGGCCCCA
AGGGCAGCCCCCTGGAGGGCGACAAGGAGCGCGCCCGGGCGGCGGACTCCAGCCCGGACACCTC
GGACAACGAGGCGAAAGAGGAGATAAAGGCAGAAAACACCACAGGAAATTGGCTGACAGCAAAG
AGCGGAAGGAAGAAGAGGTGCCCCTATACTAAACACCAGACGCTGGAATTGGAGAAAGAATTTC
TGTTCAATATGTATTTGACGCGAGAGCGCCGCCTGGAGATTAGCAAGACCATTAACCTTACAGA
CAGACAAGTCAAAATCTGGTTTCAAAATCGCAGAATGAAACTCAAGAAAATGAACCGAGAGAAT
CGGATCCGGGAACTGACCTCCAATTTTAATTTCACCTGAGCGCGCGGCCTCCCCTCCCCCGCCC
CCGCCCCCCGCTCCTTCCTTTCCCCGCCCCTCCTCCCTTTGTGCCTGGTGGTATTTTTTTTTTT
TTCCTCCCCGAGTATAAATGCAACGCGCCTGCAAAAAAAGGCAAAGACCTCAGACTCTCCTTCC
AAGGGACCTATGGTTCGTGCCGCGAAGATGCATCCACCTAAAGCATGAGAAATGGGGTCCCGGG
GCGTGGGGTGTGGTGTGCCCGCATAGATGAGGGTGGGAGTGTGGCTGGTGTGTGTGTCAACCCC
TCACTCACCCACGCACTCACGCACACCATCCTGTCCTCCATGCAAAGTTAAGGTCGAATCCACC
CGGTCAAGGGGGAAAAAGAGGGAAAAAAAAAAAAAGAAATCAACCAGAGAAGGTCTGTAATCTC
GCAGAGCACAGTCAGGATCGCTCCTTCCTTGCTGCATTTCCTCCTTAGCATAATAGACGTTTTG
GAAAGTTCGGCTAGTGTTTATGTGTTTGTCGTAGCGCCCAGCGCCTCCACCAAACCCTCTCCGT
GTCTTTACCTCCCAGTCGCTCTGAGAATCTGCTTGAAGTCTCGTATTTGTACTGCTTTCTGCTT
TTCTCCCATCCTCCCAGCAGCCCCCACATCCCCCCCGCCACTGACACCTCAGAAATTCCATCCA
GAGGAATACAAAAAAAAATTTAAAAATTAAAGCTAGAACATAGTGAAGCAAAGACAGACTGCCC
CCCCCCCCGCCAAATATCACCCTGTCCCTGTCTGGGAGTTGTGTTATTTAAAGATATTCTGTAT
GTTGTATCTTTTGCATGTAGCTTCCTTAATGGAGAAGAAAATCCTAATAAATTTCCAGAATCGT
AA

hide sequence

Protein Sequences


Protein RefSeqs	XP_038293764	(Get FASTA)	NCBI Sequence Viewer
	XP_038370183	(Get FASTA)	NCBI Sequence Viewer
	XP_038433761	(Get FASTA)	NCBI Sequence Viewer
	XP_038496235	(Get FASTA)	NCBI Sequence Viewer
	XP_543626	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCAFP00000009915.3
	ENSCAFP00030030335.1
	ENSCAFP00040032860.1
	ENSCAFP00845025355
	ENSCAFP00845025355.1

RefSeq Acc Id:

XP_543626 ⟸ XM_543626

- UniProtKB:

A0A8C0L7I3 (UniProtKB/TrEMBL), A0A8C0RNF2 (UniProtKB/TrEMBL), A0A8I3S375 (UniProtKB/TrEMBL), A0A8C0TAN0 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MTCPRNVTPNSFAEPGAAPGGAERYGRGAGMYMQPGSDFNCGVMRGCGLAPSLSKRDEGGSPNL
ALNTYPSYLSQLDSWGDPKAAYRLEQPVGRPLSSCSYPPSVKEENVCCMYSAEKRAKSGPEAAL
YAHPLQESCLGEHEVPVPSYYRASPSYSALDKPPHCAGANDFEAPFEPRASLHPRAEHLESPQL
GGKVSFPETPKSDSQTPSPGEIKTEQSLAGPKGSPLEGDKERARAADSSPDTSDNEAKEEIKAE
NTTGNWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKTINLTDRQVKIWFQNRR
MKLKKMNRENRIRELTSNFNFT

hide sequence

RefSeq Acc Id:

XP_038370183 ⟸ XM_038514255

RefSeq Acc Id:

XP_038496235 ⟸ XM_038640307

RefSeq Acc Id:	XP_038293764 ⟸ XM_038437836
- UniProtKB:	A0A8C0L7I3 (UniProtKB/TrEMBL), A0A8C0RNF2 (UniProtKB/TrEMBL), A0A8I3S375 (UniProtKB/TrEMBL), A0A8C0TAN0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038433761 ⟸ XM_038577833
- UniProtKB:	A0A8C0L7I3 (UniProtKB/TrEMBL), A0A8C0RNF2 (UniProtKB/TrEMBL), A0A8C0TAN0 (UniProtKB/TrEMBL), A0A8I3S375 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSCAFP00845025355 ⟸ ENSCAFT00845032429

Protein Domains

Homeobox

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCAFG00000006648	Ensembl
	ENSCAFG00000054650	UniProtKB/TrEMBL
	ENSCAFG00030018929	UniProtKB/TrEMBL
	ENSCAFG00040020382	UniProtKB/TrEMBL
	ENSCAFG00845018342	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCAFT00000010694.5	UniProtKB/TrEMBL
	ENSCAFT00030034791.1	UniProtKB/TrEMBL
	ENSCAFT00040037703.1	UniProtKB/TrEMBL
	ENSCAFT00845032429	ENTREZGENE
	ENSCAFT00845032429.1	UniProtKB/TrEMBL
Gene3D-CATH	Homeodomain-like	UniProtKB/TrEMBL
InterPro	Homeobox-like_sf	UniProtKB/TrEMBL
	Homeobox_CS	UniProtKB/TrEMBL
	Homeobox_dom	UniProtKB/TrEMBL
	Homeobox_metazoa	UniProtKB/TrEMBL
	HXA10/ABDB-like	UniProtKB/TrEMBL
KEGG Report	cfa:486500	UniProtKB/TrEMBL
NCBI Gene	HOXC10	ENTREZGENE
PANTHER	HOMEOBOX PROTEIN HOX-C10	UniProtKB/TrEMBL
	PTHR45874	UniProtKB/TrEMBL
Pfam	Homeodomain	UniProtKB/TrEMBL
PRINTS	HOMEOBOX	UniProtKB/TrEMBL
PROSITE	HOMEOBOX_1	UniProtKB/TrEMBL
	HOMEOBOX_2	UniProtKB/TrEMBL
SMART	HOX	UniProtKB/TrEMBL
Superfamily-SCOP	SSF46689	UniProtKB/TrEMBL
UniProt	A0A8C0L7I3	ENTREZGENE
	A0A8C0RNF2	ENTREZGENE, UniProtKB/TrEMBL
	A0A8C0TAN0	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I3S375	ENTREZGENE, UniProtKB/TrEMBL
VGNC ID	VGNC:41756	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar