CD9 (CD9 molecule) - Rat Genome Database

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Gene: CD9 (CD9 molecule) Canis lupus familiaris
Analyze
Symbol: CD9
Name: CD9 molecule
RGD ID: 12278111
Description: ENCODES a protein that exhibits integrin binding (ortholog); INVOLVED IN cell population proliferation (ortholog); negative regulation of cell population proliferation (ortholog); oligodendrocyte development (ortholog); ASSOCIATED WITH acute myeloid leukemia (ortholog); breast carcinoma (ortholog); cervix carcinoma (ortholog); FOUND IN apical plasma membrane (ortholog); cell surface (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: CD9 antigen
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12738,742,539 - 38,754,984 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2738,742,963 - 38,774,576 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha277,839,518 - 7,871,440 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02739,099,216 - 39,131,465 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2739,099,221 - 39,131,485 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12738,970,947 - 39,002,367 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02739,012,475 - 39,043,831 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0277,318,116 - 7,350,275 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
CD9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12738,742,539 - 38,754,984 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2738,742,963 - 38,774,576 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha277,839,518 - 7,871,440 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02739,099,216 - 39,131,465 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2739,099,221 - 39,131,485 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12738,970,947 - 39,002,367 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02739,012,475 - 39,043,831 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0277,318,116 - 7,350,275 (+)NCBIUU_Cfam_GSD_1.0
CD9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38126,199,946 - 6,238,266 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl126,199,715 - 6,238,271 (+)EnsemblGRCh38hg38GRCh38
GRCh37126,309,112 - 6,347,432 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36126,179,816 - 6,217,688 (+)NCBINCBI36Build 36hg18NCBI36
Build 34126,179,815 - 6,217,688NCBI
Celera127,925,577 - 7,963,448 (+)NCBICelera
Cytogenetic Map12p13.31NCBI
HuRef126,161,749 - 6,199,703 (+)NCBIHuRef
CHM1_1126,308,757 - 6,346,716 (+)NCBICHM1_1
T2T-CHM13v2.0126,207,556 - 6,245,881 (+)NCBIT2T-CHM13v2.0
Cd9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396125,437,229 - 125,471,723 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6125,437,229 - 125,471,754 (-)EnsemblGRCm39 Ensembl
GRCm386125,460,266 - 125,494,760 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6125,460,266 - 125,494,791 (-)EnsemblGRCm38mm10GRCm38
MGSCv376125,410,284 - 125,444,773 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366125,425,885 - 125,460,374 (-)NCBIMGSCv36mm8
Celera6127,119,283 - 127,154,258 (-)NCBICelera
Cytogenetic Map6F3NCBI
cM Map659.32NCBI
Cd9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84159,942,553 - 159,975,463 (-)NCBIGRCr8
mRatBN7.24158,256,328 - 158,289,136 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4158,256,328 - 158,289,222 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4164,492,776 - 164,525,490 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04160,275,706 - 160,308,420 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04158,908,861 - 158,941,566 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04157,977,163 - 158,010,091 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4157,977,162 - 158,010,166 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04224,989,635 - 225,022,563 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44162,279,462 - 162,312,889 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14162,524,803 - 162,557,764 (-)NCBI
Celera4146,991,146 - 147,023,948 (-)NCBICelera
Cytogenetic Map4q42NCBI
Cd9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554133,891,874 - 3,928,119 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554133,891,874 - 3,924,065 (+)NCBIChiLan1.0ChiLan1.0
CD9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21011,757,890 - 11,796,638 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11211,752,117 - 11,793,395 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0126,327,783 - 6,366,083 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1126,245,351 - 6,283,385 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl126,245,348 - 6,283,385 (+)Ensemblpanpan1.1panPan2
Cd9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945102,830,012 - 102,862,577 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049367091,497,504 - 1,530,114 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CD9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl564,420,182 - 64,460,304 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1564,420,177 - 64,459,783 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2566,879,690 - 66,919,302 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Pig Cytomap5q25NCBI
CD9
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1116,236,449 - 6,275,904 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl116,236,494 - 6,275,909 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660631,962,866 - 1,999,271 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cd9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248603,027,029 - 3,056,798 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248603,027,126 - 3,055,974 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in CD9
176 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 5 1 16 6 6 12 10 6
Low 4 6 6 6 6 8
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSCAFT00000024087   ⟹   ENSCAFP00000022361
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2738,742,963 - 38,774,576 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000067838   ⟹   ENSCAFP00000065317
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2738,742,963 - 38,764,638 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000072983   ⟹   ENSCAFP00000051485
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2738,742,963 - 38,748,100 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000079036   ⟹   ENSCAFP00000052859
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2738,742,963 - 38,748,100 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845052450   ⟹   ENSCAFP00845041151
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl2739,099,221 - 39,131,485 (-)Ensembl
RefSeq Acc Id: XM_038439226   ⟹   XP_038295154
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02739,099,216 - 39,131,465 (-)NCBI
RefSeq Acc Id: XM_038459733   ⟹   XP_038315661
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha277,839,518 - 7,871,440 (+)NCBI
RefSeq Acc Id: XM_038513890   ⟹   XP_038369818
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12738,970,947 - 39,002,367 (-)NCBI
RefSeq Acc Id: XM_038576555   ⟹   XP_038432483
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0277,318,116 - 7,350,275 (+)NCBI
RefSeq Acc Id: XM_038641733   ⟹   XP_038497661
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02739,012,475 - 39,043,831 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: ENSCAFP00000052859   ⟸   ENSCAFT00000079036
RefSeq Acc Id: ENSCAFP00000065317   ⟸   ENSCAFT00000067838
RefSeq Acc Id: ENSCAFP00000022361   ⟸   ENSCAFT00000024087
RefSeq Acc Id: ENSCAFP00000051485   ⟸   ENSCAFT00000072983
RefSeq Acc Id: XP_038369818   ⟸   XM_038513890
RefSeq Acc Id: XP_038497661   ⟸   XM_038641733
RefSeq Acc Id: XP_038295154   ⟸   XM_038439226
- UniProtKB: A0A8C0KQR3 (UniProtKB/TrEMBL),   A0A8C0PJB0 (UniProtKB/TrEMBL),   A0A8I3Q7Y3 (UniProtKB/TrEMBL),   A0A8C0TCZ9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038315661   ⟸   XM_038459733
- UniProtKB: A0A8C0KQR3 (UniProtKB/TrEMBL),   A0A8C0PJB0 (UniProtKB/TrEMBL),   A0A8I3Q7Y3 (UniProtKB/TrEMBL),   A0A8C0TCZ9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038432483   ⟸   XM_038576555
- UniProtKB: A0A8C0KQR3 (UniProtKB/TrEMBL),   A0A8C0PJB0 (UniProtKB/TrEMBL),   A0A8C0TCZ9 (UniProtKB/TrEMBL),   A0A8I3Q7Y3 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845041151   ⟸   ENSCAFT00845052450


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000015172 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030024300 UniProtKB/TrEMBL
  ENSCAFG00040020891 UniProtKB/TrEMBL
  ENSCAFG00845029613 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000024087.5 UniProtKB/TrEMBL
  ENSCAFT00030044725.1 UniProtKB/TrEMBL
  ENSCAFT00030044750.1 UniProtKB/TrEMBL
  ENSCAFT00040038733.1 UniProtKB/TrEMBL
  ENSCAFT00040038797.1 UniProtKB/TrEMBL
  ENSCAFT00845052450 ENTREZGENE
  ENSCAFT00845052450.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.1450.10 UniProtKB/TrEMBL
InterPro CD9_LEL UniProtKB/TrEMBL
  Tetraspanin/Peripherin UniProtKB/TrEMBL
  Tetraspanin_animals UniProtKB/TrEMBL
  Tetraspanin_CS UniProtKB/TrEMBL
  Tetraspanin_EC2_sf UniProtKB/TrEMBL
NCBI Gene CD9 ENTREZGENE
PANTHER CD9 ANTIGEN UniProtKB/TrEMBL
  PTHR19282 UniProtKB/TrEMBL
Pfam Tetraspanin UniProtKB/TrEMBL
PIRSF Tetraspanin UniProtKB/TrEMBL
PRINTS TMFOUR UniProtKB/TrEMBL
PROSITE TM4_1 UniProtKB/TrEMBL
Superfamily-SCOP SSF48652 UniProtKB/TrEMBL
UniProt A0A8C0KQR3 ENTREZGENE
  A0A8C0PJB0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0TCZ9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3Q7Y3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0SJI6_CANLF UniProtKB/TrEMBL
VGNC ID VGNC:38981 ENTREZGENE