OFD1 (OFD1 centriole and centriolar satellite protein) - Rat Genome Database

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Gene: OFD1 (OFD1 centriole and centriolar satellite protein) Canis lupus familiaris
Analyze
Symbol: OFD1
Name: OFD1 centriole and centriolar satellite protein
RGD ID: 12275308
Description: ENCODES a protein that exhibits alpha-tubulin binding (ortholog); gamma-tubulin binding (ortholog); identical protein binding (ortholog); INVOLVED IN axoneme assembly (ortholog); centriole replication (ortholog); cilium assembly (ortholog); ASSOCIATED WITH autistic disorder (ortholog); CAKUT (ortholog); COACH syndrome (ortholog); FOUND IN centriolar satellite (ortholog); centriole (ortholog); ciliary basal body (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X10,140,439 - 10,194,478 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX10,140,067 - 10,194,472 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX10,114,679 - 10,168,786 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X10,098,262 - 10,152,653 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX10,092,106 - 10,152,605 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X10,166,885 - 10,220,990 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X10,158,225 - 10,212,581 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X10,184,578 - 10,238,702 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
OFD1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X10,140,439 - 10,194,478 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX10,140,067 - 10,194,472 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX10,114,679 - 10,168,786 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X10,098,262 - 10,152,653 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX10,092,106 - 10,152,605 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X10,166,885 - 10,220,990 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X10,158,225 - 10,212,581 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X10,184,578 - 10,238,702 (+)NCBIUU_Cfam_GSD_1.0
OFD1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X13,714,505 - 13,773,738 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX13,734,743 - 13,777,955 (+)EnsemblGRCh38hg38GRCh38
GRCh37X13,752,867 - 13,787,476 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X13,662,801 - 13,697,393 (+)NCBINCBI36Build 36hg18NCBI36
Build 34X13,512,536 - 13,547,127NCBI
CeleraX17,869,913 - 17,904,562 (+)NCBICelera
Cytogenetic MapXp22.2NCBI
HuRefX11,510,937 - 11,544,940 (+)NCBIHuRef
CHM1_1X13,783,650 - 13,818,298 (+)NCBICHM1_1
T2T-CHM13v2.0X13,295,911 - 13,355,418 (+)NCBIT2T-CHM13v2.0
Ofd1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X165,171,503 - 165,223,704 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX165,173,029 - 165,223,700 (-)EnsemblGRCm39 Ensembl
GRCm38X166,386,573 - 166,440,704 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX166,390,033 - 166,440,704 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X162,827,965 - 162,878,636 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X161,735,041 - 161,784,660 (-)NCBIMGSCv36mm8
CeleraX149,569,705 - 149,620,495 (-)NCBICelera
Cytogenetic MapXF5NCBI
cM MapX77.28NCBI
Ofd1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X31,647,000 - 31,687,768 (+)NCBIGRCr8
mRatBN7.2X28,015,347 - 28,056,115 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX28,015,347 - 28,056,110 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX29,049,925 - 29,090,559 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X32,485,025 - 32,525,793 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X28,664,565 - 28,705,199 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X29,562,165 - 29,602,934 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX29,562,165 - 29,602,925 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X29,955,456 - 29,996,224 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X48,701,675 - 48,742,443 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
CeleraX28,388,104 - 28,428,825 (+)NCBICelera
Cytogenetic MapXq13NCBI
Ofd1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555194,433,855 - 4,471,070 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555194,433,747 - 4,470,842 (-)NCBIChiLan1.0ChiLan1.0
OFD1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X15,468,675 - 15,552,455 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X15,472,486 - 15,552,078 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X6,296,597 - 6,376,197 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X13,630,006 - 13,669,285 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX13,611,304 - 13,664,512 (+)Ensemblpanpan1.1panPan2
Ofd1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X3,292,935 - 3,331,915 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364703,292,249 - 3,331,800 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364703,292,961 - 3,331,915 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
OFD1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1X10,361,403 - 10,415,502 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X11,314,606 - 11,369,244 (+)NCBISscrofa10.2Sscrofa10.2susScr3
OFD1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X12,222,396 - 12,256,802 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX12,222,760 - 12,256,557 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605614,039,780 - 14,076,648 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ofd1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624882376,556 - 416,509 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624882376,447 - 417,066 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in OFD1
3976 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 3 13 6 6 6 8 10 2
Low 2 5 9 6 6 6 6 4
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005641122 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_014111611 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022416439 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038449431 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038449432 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038449433 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038449434 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038464332 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038464333 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038522848 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038522849 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038522850 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038522851 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038522852 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038522853 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038586836 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038586837 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038586838 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038586839 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038586840 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038586841 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038651354 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038651355 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038651356 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038651357 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038651358 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038651359 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_537958 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000146 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000369 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000110 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000175 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000039 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSCAFT00000018685   ⟹   ENSCAFP00000017310
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 EnsemblX10,140,067 - 10,194,472 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000018691   ⟹   ENSCAFP00000017316
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 EnsemblX10,140,067 - 10,194,472 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000064025   ⟹   ENSCAFP00000059196
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 EnsemblX10,140,067 - 10,193,107 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000067672   ⟹   ENSCAFP00000045286
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 EnsemblX10,140,067 - 10,193,107 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000074763   ⟹   ENSCAFP00000050294
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 EnsemblX10,140,067 - 10,193,107 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000086808   ⟹   ENSCAFP00000049541
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 EnsemblX10,140,067 - 10,194,472 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845050795   ⟹   ENSCAFP00845039821
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 EnsemblX10,092,106 - 10,152,343 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845050859   ⟹   ENSCAFP00845039869
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 EnsemblX10,092,106 - 10,151,282 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845050992   ⟹   ENSCAFP00845039974
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 EnsemblX10,092,106 - 10,151,282 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845051142   ⟹   ENSCAFP00845040102
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 EnsemblX10,098,169 - 10,152,605 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845051205   ⟹   ENSCAFP00845040160
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 EnsemblX10,098,919 - 10,152,605 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845051275   ⟹   ENSCAFP00845040218
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 EnsemblX10,108,645 - 10,138,690 (+)Ensembl
RefSeq Acc Id: XM_005641122   ⟹   XP_005641179
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1X10,140,439 - 10,194,478 (+)NCBI
Dog10K_Boxer_TashaX10,114,679 - 10,168,786 (+)NCBI
Sequence:
RefSeq Acc Id: XM_014111611   ⟹   XP_013967086
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1X10,141,984 - 10,194,473 (+)NCBI
Dog10K_Boxer_TashaX10,116,503 - 10,168,781 (+)NCBI
Sequence:
RefSeq Acc Id: XM_022416439   ⟹   XP_022272147
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1X10,140,439 - 10,194,473 (+)NCBI
Dog10K_Boxer_TashaX10,114,679 - 10,168,781 (+)NCBI
Sequence:
RefSeq Acc Id: XM_038449431   ⟹   XP_038305359
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0X10,098,262 - 10,152,653 (+)NCBI
RefSeq Acc Id: XM_038449432   ⟹   XP_038305360
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0X10,098,606 - 10,152,648 (+)NCBI
RefSeq Acc Id: XM_038449433   ⟹   XP_038305361
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0X10,098,262 - 10,152,648 (+)NCBI
RefSeq Acc Id: XM_038449434   ⟹   XP_038305362
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0X10,100,089 - 10,152,648 (+)NCBI
RefSeq Acc Id: XM_038464332   ⟹   XP_038320260
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_TashaX10,114,679 - 10,168,781 (+)NCBI
RefSeq Acc Id: XM_038464333   ⟹   XP_038320261
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_TashaX10,115,023 - 10,168,781 (+)NCBI
RefSeq Acc Id: XM_038522848   ⟹   XP_038378776
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1X10,166,885 - 10,220,990 (+)NCBI
RefSeq Acc Id: XM_038522849   ⟹   XP_038378777
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1X10,166,885 - 10,220,985 (+)NCBI
RefSeq Acc Id: XM_038522850   ⟹   XP_038378778
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1X10,166,885 - 10,220,985 (+)NCBI
RefSeq Acc Id: XM_038522851   ⟹   XP_038378779
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1X10,167,229 - 10,220,985 (+)NCBI
RefSeq Acc Id: XM_038522852   ⟹   XP_038378780
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1X10,168,708 - 10,220,985 (+)NCBI
RefSeq Acc Id: XM_038522853   ⟹   XP_038378781
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1X10,167,229 - 10,220,985 (+)NCBI
RefSeq Acc Id: XM_038586836   ⟹   XP_038442764
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0X10,184,578 - 10,238,702 (+)NCBI
RefSeq Acc Id: XM_038586837   ⟹   XP_038442765
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0X10,184,922 - 10,238,697 (+)NCBI
RefSeq Acc Id: XM_038586838   ⟹   XP_038442766
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0X10,184,578 - 10,238,697 (+)NCBI
RefSeq Acc Id: XM_038586839   ⟹   XP_038442767
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0X10,186,402 - 10,238,697 (+)NCBI
RefSeq Acc Id: XM_038586840   ⟹   XP_038442768
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0X10,184,578 - 10,238,697 (+)NCBI
RefSeq Acc Id: XM_038586841   ⟹   XP_038442769
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0X10,184,922 - 10,238,697 (+)NCBI
RefSeq Acc Id: XM_038651354   ⟹   XP_038507282
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0X10,158,225 - 10,212,581 (+)NCBI
RefSeq Acc Id: XM_038651355   ⟹   XP_038507283
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0X10,158,569 - 10,212,576 (+)NCBI
RefSeq Acc Id: XM_038651356   ⟹   XP_038507284
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0X10,158,225 - 10,212,576 (+)NCBI
RefSeq Acc Id: XM_038651357   ⟹   XP_038507285
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0X10,160,052 - 10,212,576 (+)NCBI
RefSeq Acc Id: XM_038651358   ⟹   XP_038507286
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0X10,158,225 - 10,212,576 (+)NCBI
RefSeq Acc Id: XM_038651359   ⟹   XP_038507287
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0X10,158,569 - 10,212,576 (+)NCBI
RefSeq Acc Id: XM_537958   ⟹   XP_537958
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1X10,140,474 - 10,194,473 (+)NCBI
Dog10K_Boxer_TashaX10,115,023 - 10,168,781 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005641179 (Get FASTA)   NCBI Sequence Viewer  
  XP_013967086 (Get FASTA)   NCBI Sequence Viewer  
  XP_022272147 (Get FASTA)   NCBI Sequence Viewer  
  XP_038305359 (Get FASTA)   NCBI Sequence Viewer  
  XP_038305360 (Get FASTA)   NCBI Sequence Viewer  
  XP_038305361 (Get FASTA)   NCBI Sequence Viewer  
  XP_038305362 (Get FASTA)   NCBI Sequence Viewer  
  XP_038320260 (Get FASTA)   NCBI Sequence Viewer  
  XP_038320261 (Get FASTA)   NCBI Sequence Viewer  
  XP_038378776 (Get FASTA)   NCBI Sequence Viewer  
  XP_038378777 (Get FASTA)   NCBI Sequence Viewer  
  XP_038378778 (Get FASTA)   NCBI Sequence Viewer  
  XP_038378779 (Get FASTA)   NCBI Sequence Viewer  
  XP_038378780 (Get FASTA)   NCBI Sequence Viewer  
  XP_038378781 (Get FASTA)   NCBI Sequence Viewer  
  XP_038442764 (Get FASTA)   NCBI Sequence Viewer  
  XP_038442765 (Get FASTA)   NCBI Sequence Viewer  
  XP_038442766 (Get FASTA)   NCBI Sequence Viewer  
  XP_038442767 (Get FASTA)   NCBI Sequence Viewer  
  XP_038442768 (Get FASTA)   NCBI Sequence Viewer  
  XP_038442769 (Get FASTA)   NCBI Sequence Viewer  
  XP_038507282 (Get FASTA)   NCBI Sequence Viewer  
  XP_038507283 (Get FASTA)   NCBI Sequence Viewer  
  XP_038507284 (Get FASTA)   NCBI Sequence Viewer  
  XP_038507285 (Get FASTA)   NCBI Sequence Viewer  
  XP_038507286 (Get FASTA)   NCBI Sequence Viewer  
  XP_038507287 (Get FASTA)   NCBI Sequence Viewer  
  XP_537958 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCAFP00000017310.4
  ENSCAFP00000017316.4
  ENSCAFP00000045286.1
  ENSCAFP00000049541.1
  ENSCAFP00000050294.2
  ENSCAFP00000059196.1
  ENSCAFP00000074844.1
  ENSCAFP00030015994.1
  ENSCAFP00030016072.1
  ENSCAFP00040018453.1
  ENSCAFP00040018667.1
  ENSCAFP00040018742.1
  ENSCAFP00040018853.1
  ENSCAFP00040018966.1
  ENSCAFP00845039821.1
  ENSCAFP00845039869.1
  ENSCAFP00845039974.1
  ENSCAFP00845040102.1
  ENSCAFP00845040160
  ENSCAFP00845040160.1
  ENSCAFP00845040218.1
RefSeq Acc Id: XP_005641179   ⟸   XM_005641122
- Peptide Label: isoform X10
- UniProtKB: A0A8C0QUF0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_537958   ⟸   XM_537958
- Peptide Label: isoform X1
- UniProtKB: A0A8I3Q6R3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013967086   ⟸   XM_014111611
- Peptide Label: isoform X3
- UniProtKB: A0A8I3Q6R3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_022272147   ⟸   XM_022416439
- Peptide Label: isoform X11
- UniProtKB: A0A8C0QUF0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000059196   ⟸   ENSCAFT00000064025
RefSeq Acc Id: ENSCAFP00000050294   ⟸   ENSCAFT00000074763
RefSeq Acc Id: ENSCAFP00000017310   ⟸   ENSCAFT00000018685
RefSeq Acc Id: ENSCAFP00000045286   ⟸   ENSCAFT00000067672
RefSeq Acc Id: ENSCAFP00000017316   ⟸   ENSCAFT00000018691
RefSeq Acc Id: ENSCAFP00000049541   ⟸   ENSCAFT00000086808
RefSeq Acc Id: XP_038378776   ⟸   XM_038522848
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038378777   ⟸   XM_038522849
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038378778   ⟸   XM_038522850
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038378779   ⟸   XM_038522851
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038378781   ⟸   XM_038522853
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038378780   ⟸   XM_038522852
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038507282   ⟸   XM_038651354
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038507284   ⟸   XM_038651356
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038507286   ⟸   XM_038651358
- Peptide Label: isoform X8
RefSeq Acc Id: XP_038507283   ⟸   XM_038651355
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038507287   ⟸   XM_038651359
- Peptide Label: isoform X8
RefSeq Acc Id: XP_038507285   ⟸   XM_038651357
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038305359   ⟸   XM_038449431
- Peptide Label: isoform X1
- UniProtKB: A0A8I3Q6R3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038305361   ⟸   XM_038449433
- Peptide Label: isoform X2
- UniProtKB: A0A8I3Q6R3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038305360   ⟸   XM_038449432
- Peptide Label: isoform X1
- UniProtKB: A0A8I3Q6R3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038305362   ⟸   XM_038449434
- Peptide Label: isoform X3
- UniProtKB: A0A8I3Q6R3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038320260   ⟸   XM_038464332
- Peptide Label: isoform X12
- UniProtKB: A0A8C0SC58 (UniProtKB/TrEMBL),   A0A8P0T297 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038320261   ⟸   XM_038464333
- Peptide Label: isoform X13
- UniProtKB: A0A8I3Q6R3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038442764   ⟸   XM_038586836
- Peptide Label: isoform X1
- UniProtKB: A0A8I3Q6R3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038442766   ⟸   XM_038586838
- Peptide Label: isoform X2
- UniProtKB: A0A8I3Q6R3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038442768   ⟸   XM_038586840
- Peptide Label: isoform X9
- UniProtKB: A0A8I3Q6R3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038442765   ⟸   XM_038586837
- Peptide Label: isoform X1
- UniProtKB: A0A8I3Q6R3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038442769   ⟸   XM_038586841
- Peptide Label: isoform X9
- UniProtKB: A0A8I3Q6R3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038442767   ⟸   XM_038586839
- Peptide Label: isoform X3
- UniProtKB: A0A8I3Q6R3 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845039869   ⟸   ENSCAFT00845050859
RefSeq Acc Id: ENSCAFP00845040160   ⟸   ENSCAFT00845051205
RefSeq Acc Id: ENSCAFP00845039821   ⟸   ENSCAFT00845050795
RefSeq Acc Id: ENSCAFP00845040102   ⟸   ENSCAFT00845051142
RefSeq Acc Id: ENSCAFP00845040218   ⟸   ENSCAFT00845051275
RefSeq Acc Id: ENSCAFP00845039974   ⟸   ENSCAFT00845050992

Promoters
RGD ID:13689263
Promoter ID:EPDNEW_C7329
Type:single initiation site
Name:OFD1_1
Description:OFD1, centriole and centriolar satellite protein
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1X10,140,272 - 10,140,332EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000011764 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030009700 UniProtKB/TrEMBL
  ENSCAFG00040011095 UniProtKB/TrEMBL
  ENSCAFG00845028661 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000018685.5 UniProtKB/TrEMBL
  ENSCAFT00000018691.6 UniProtKB/TrEMBL
  ENSCAFT00000064025.2 UniProtKB/TrEMBL
  ENSCAFT00000067672.2 UniProtKB/TrEMBL
  ENSCAFT00000074763.2 UniProtKB/TrEMBL
  ENSCAFT00000086808.2 UniProtKB/TrEMBL
  ENSCAFT00000099581.1 UniProtKB/TrEMBL
  ENSCAFT00030018316.1 UniProtKB/TrEMBL
  ENSCAFT00030018408.1 UniProtKB/TrEMBL
  ENSCAFT00040021250.1 UniProtKB/TrEMBL
  ENSCAFT00040021506.1 UniProtKB/TrEMBL
  ENSCAFT00040021588.1 UniProtKB/TrEMBL
  ENSCAFT00040021721.1 UniProtKB/TrEMBL
  ENSCAFT00040021859.1 UniProtKB/TrEMBL
  ENSCAFT00845050795.1 UniProtKB/TrEMBL
  ENSCAFT00845050859.1 UniProtKB/TrEMBL
  ENSCAFT00845050992.1 UniProtKB/TrEMBL
  ENSCAFT00845051142.1 UniProtKB/TrEMBL
  ENSCAFT00845051205 ENTREZGENE
  ENSCAFT00845051205.1 UniProtKB/TrEMBL
  ENSCAFT00845051275.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.960.40 UniProtKB/TrEMBL
InterPro LisH UniProtKB/TrEMBL
NCBI Gene OFD1 ENTREZGENE
PANTHER LISH DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
  ORAL-FACIAL-DIGITAL SYNDROME 1 PROTEIN HOMOLOG UniProtKB/TrEMBL
Pfam LisH_2 UniProtKB/TrEMBL
PROSITE LISH UniProtKB/TrEMBL
SMART LisH UniProtKB/TrEMBL
UniProt A0A8C0MS74_CANLF UniProtKB/TrEMBL
  A0A8C0N587_CANLF UniProtKB/TrEMBL
  A0A8C0QUF0 ENTREZGENE
  A0A8C0SAJ1_CANLF UniProtKB/TrEMBL
  A0A8C0SB72_CANLF UniProtKB/TrEMBL
  A0A8C0SBH9_CANLF UniProtKB/TrEMBL
  A0A8C0SC58 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0YW24_CANLF UniProtKB/TrEMBL
  A0A8I3Q5R3_CANLF UniProtKB/TrEMBL
  A0A8I3Q6R3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3QHQ2_CANLF UniProtKB/TrEMBL
  A0A8I3S6U9_CANLF UniProtKB/TrEMBL
  A0A8I3S6V4_CANLF UniProtKB/TrEMBL
  A0A8I3SBZ0_CANLF UniProtKB/TrEMBL
  A0A8P0NDK3_CANLF UniProtKB/TrEMBL
  A0A8P0NDU5_CANLF UniProtKB/TrEMBL
  A0A8P0P031_CANLF UniProtKB/TrEMBL
  A0A8P0P8A6_CANLF UniProtKB/TrEMBL
  A0A8P0T297 ENTREZGENE
  A0A8P0TU45_CANLF UniProtKB/TrEMBL
UniProt Secondary A0A8P0SYI0 UniProtKB/TrEMBL
  A0A8P0T297 UniProtKB/TrEMBL
VGNC ID VGNC:44103 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-04-16 OFD1  OFD1 centriole and centriolar satellite protein    OFD1, centriole and centriolar satellite protein  Symbol and/or name change 5135510 APPROVED