RAPSN (receptor associated protein of the synapse)

Gene: RAPSN (receptor associated protein of the synapse) Canis lupus familiaris

Analyze

Symbol:

RAPSN

Name:

receptor associated protein of the synapse

RGD ID:

12274598

Description:

ENCODES a protein that exhibits ionotropic glutamate receptor binding (ortholog); INVOLVED IN establishment of protein localization to postsynaptic membrane (ortholog); motor neuron apoptotic process (ortholog); positive regulation of motor neuron apoptotic process (ortholog); PARTICIPATES IN acetylcholine signaling pathway via nicotinic acetylcholine receptor; ASSOCIATED WITH autoimmune disease (ortholog); congenital disorder of glycosylation type IIc (ortholog); congenital myasthenic syndrome (ortholog); FOUND IN neuromuscular junction (ortholog); postsynaptic membrane (ortholog); postsynaptic specialization membrane (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

43 kDa receptor-associated protein of the synapse

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

CanFam3.1 - Dog CanFam3.1 Assembly

Position:

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	18	42,199,160 - 42,210,668 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	18	42,199,412 - 42,210,673 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	18	40,930,029 - 40,941,208 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	18	42,855,197 - 42,866,378 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	18	42,855,420 - 42,866,216 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	18	42,341,801 - 42,352,980 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	18	41,896,689 - 41,907,866 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	18	42,626,215 - 42,637,394 (+)	NCBI		UU_Cfam_GSD_1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autoimmune disease (ISO)

congenital disorder of glycosylation type IIc (ISO)

congenital myasthenic syndrome (ISO)

congenital myasthenic syndrome 11 (ISO)

congenital myasthenic syndrome 4C (ISO)

Congenital Myasthenic Syndrome, with Facial Dysmorphism, associated with Acetylcholine Receptor Deficiency (ISO)

Developmental Disabilities (ISO)

Experimental Autoimmune Myasthenia Gravis (ISO)

fetal akinesia deformation sequence syndrome (ISO)

fetal akinesia deformation sequence syndrome 1 (ISO)

fetal akinesia deformation sequence syndrome 2 (ISO)

genetic disease (ISO)

Hydrops Fetalis (ISO)

hypertrophic cardiomyopathy (ISO)

intellectual disability (ISO)

muscular disease (ISO)

myopathy (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

chemical synaptic transmission (IEA)

establishment of protein localization to postsynaptic membrane (ISO)

maintenance of postsynaptic specialization structure (IEA)

motor neuron apoptotic process (IEA,ISO)

neuromuscular junction development (IEA)

neurotransmitter receptor localization to postsynaptic specialization membrane (IEA)

positive regulation of motor neuron apoptotic process (IEA,ISO)

positive regulation of neuromuscular synaptic transmission (IEA,ISO)

regulation of postsynaptic membrane organization (ISO)

skeletal muscle acetylcholine-gated channel clustering (IEA)

synaptic transmission, cholinergic (IEA,ISO)

Cellular Component

centrosome (IEA)

cytoplasm (IEA)

cytosol (IEA)

Golgi apparatus (IEA)

membrane (IEA)

neuromuscular junction (IEA,ISO)

plasma membrane (IEA)

postsynaptic membrane (IEA,ISO)

postsynaptic specialization membrane (IEA,ISO)

synapse (IEA)

Molecular Function

acetylcholine receptor binding (IEA)

ionotropic glutamate receptor binding (ISO)

metal ion binding (IEA)

protein binding (ISO)

protein-macromolecule adaptor activity (IEA)

protein-membrane adaptor activity (IEA)

structural constituent of postsynaptic specialization (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

acetylcholine signaling pathway via nicotinic acetylcholine receptor (ISO)

References

Additional References at PubMed

PMID:22301074

Genomics

Comparative Map Data

RAPSN
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	18	42,199,160 - 42,210,668 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	18	42,199,412 - 42,210,673 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	18	40,930,029 - 40,941,208 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	18	42,855,197 - 42,866,378 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	18	42,855,420 - 42,866,216 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	18	42,341,801 - 42,352,980 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	18	41,896,689 - 41,907,866 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	18	42,626,215 - 42,637,394 (+)	NCBI		UU_Cfam_GSD_1.0

RAPSN
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	11	47,437,764 - 47,449,136 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	11	47,437,764 - 47,449,143 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	11	47,459,315 - 47,470,688 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	11	47,415,891 - 47,427,306 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	11	47,415,890 - 47,427,306	NCBI
Celera	11	47,601,051 - 47,612,463 (-)	NCBI		Celera
Cytogenetic Map	11	p11.2	NCBI
HuRef	11	47,159,075 - 47,170,494 (-)	NCBI		HuRef
CHM1_1	11	47,458,570 - 47,469,991 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	11	47,597,603 - 47,608,976 (-)	NCBI		T2T-CHM13v2.0

Rapsn
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	90,864,594 - 90,876,074 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	90,865,965 - 90,876,074 (+)	Ensembl		GRCm39 Ensembl
GRCm38	2	91,035,472 - 91,045,729 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	91,035,620 - 91,045,729 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	90,875,784 - 90,885,886 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	2	90,836,478 - 90,846,568 (+)	NCBI		MGSCv36	mm8
Celera	2	92,420,152 - 92,430,248 (+)	NCBI		Celera
Cytogenetic Map	2	E1	NCBI
cM Map	2	50.44	NCBI

Rapsn
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	97,470,891 - 97,480,196 (+)	NCBI		GRCr8
mRatBN7.2	3	77,015,073 - 77,024,378 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	76,983,471 - 77,024,373 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	80,493,612 - 80,502,907 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	89,092,627 - 89,101,922 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	86,943,726 - 86,953,069 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	79,859,815 - 79,869,486 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	79,860,179 - 79,869,524 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	86,568,568 - 86,578,239 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	75,396,836 - 75,406,115 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	3	75,293,208 - 75,302,485 (+)	NCBI
Celera	3	76,223,882 - 76,233,161 (+)	NCBI		Celera
Cytogenetic Map	3	q24	NCBI

Rapsn
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955422	826,727 - 834,289 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955422	826,556 - 834,483 (+)	NCBI	ChiLan1.0	ChiLan1.0

RAPSN
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	9	49,642,069 - 49,656,586 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	11	49,661,853 - 49,676,291 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	11	47,387,324 - 47,398,579 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	11	47,940,530 - 47,951,667 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	11	47,940,530 - 47,951,667 (-)	Ensembl	panpan1.1		panPan2

Rapsn
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	19,680,416 - 19,692,511 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936562	1,795,905 - 1,804,181 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936562	1,796,087 - 1,804,153 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RAPSN
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	1	17,867,721 - 17,887,162 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	1	17,868,888 - 17,887,164 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666038	115,165,684 - 115,176,850 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Rapsn
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624767	1,351,370 - 1,358,187 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624767	1,350,820 - 1,358,107 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in RAPSN
150 total Variants

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	reproductive system	respiratory system	adipose tissue
High
Medium		3						6
Low	1	2	13	5	6	5	4		3	8	8	1
Below cutoff	4		9	1		1	2		9		2	5

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_038424371	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038500712	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038563303	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038627425	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_845002	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AAEX04000018	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAHUQ010000213	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAQRD010000037	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAUVH010000176	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	REHQ01000018	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCAFT00000013802 ⟹ ENSCAFP00000012765

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	18	42,199,412 - 42,210,673 (+)	Ensembl

RefSeq Acc Id:

ENSCAFT00000068306 ⟹ ENSCAFP00000051493

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	18	42,199,412 - 42,209,979 (+)	Ensembl

RefSeq Acc Id:

ENSCAFT00000076333 ⟹ ENSCAFP00000065382

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	18	42,199,412 - 42,210,673 (+)	Ensembl

RefSeq Acc Id:

ENSCAFT00000090260 ⟹ ENSCAFP00000056172

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	18	42,199,412 - 42,210,673 (+)	Ensembl

RefSeq Acc Id:

ENSCAFT00000090999 ⟹ ENSCAFP00000065147

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	18	42,199,412 - 42,209,454 (+)	Ensembl

RefSeq Acc Id:

ENSCAFT00845037006 ⟹ ENSCAFP00845028976

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	18	42,855,420 - 42,866,216 (+)	Ensembl

RefSeq Acc Id:

ENSCAFT00845037073 ⟹ ENSCAFP00845029033

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	18	42,855,420 - 42,866,216 (+)	Ensembl

RefSeq Acc Id:

ENSCAFT00845037115 ⟹ ENSCAFP00845029069

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	18	42,855,420 - 42,866,216 (+)	Ensembl

RefSeq Acc Id:

ENSCAFT00845037332 ⟹ ENSCAFP00845029242

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	18	42,855,420 - 42,865,688 (+)	Ensembl

RefSeq Acc Id:

XM_038424371 ⟹ XP_038280299

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	18	42,855,197 - 42,866,378 (+)	NCBI

RefSeq Acc Id:

XM_038500712 ⟹ XP_038356640

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	18	42,341,801 - 42,352,980 (+)	NCBI

RefSeq Acc Id:

XM_038563303 ⟹ XP_038419231

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	18	42,626,215 - 42,637,394 (+)	NCBI

RefSeq Acc Id:

XM_038627425 ⟹ XP_038483353

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	18	41,896,689 - 41,907,866 (+)	NCBI

RefSeq Acc Id:

XM_845002 ⟹ XP_850095

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	18	42,199,160 - 42,210,668 (+)	NCBI
Dog10K_Boxer_Tasha	18	40,930,029 - 40,941,208 (+)	NCBI

Sequence:

show sequence

CCAGGCCACGGGGAGGGCCTGCAGGGCCAGGGAGGCAGGGGCCAGTGTCAGAGGCCCCGAGGAG
ACACCCAAGGTTGTGCGGGAGCAGGGAGCAGGGTGCCTGCATCCCGGGGAAGCCACCTCCCAGC
CTGGGTGGGGGGGTGCGGCAGAGGCCCGCGTGACACTGTGGCTGACATTCCTCAGCGGCCACGT
GGCCCCAACTGGCAGGGACAGCTGCGGACTGGGGCCGGACAAGCCTTGTTCCCAGGGTGGCGCC
CGCTCTCCATCTAGGCCCCTCCTGGGCCCCTGCCTGGCGCCGCTGTCCTCCCTGGGGCTCCGTG
GGCGGCTGGCACTGCGGTCCGCGCCATGAACACCTAGAAGGCCGGAGCGCCCGGGGTCTCTCCC
TCCTCGTGCGGTGCAGGGCTCTGCGAGGATGGGGCAGGACCAGACGAAGCAGCAGATCGAGAAG
GGGCTCCAGCTGTACCAGTCCAACCAGACCGAGAAGGCGCTGCACGTGTGGATGAAGGTGCTGG
AGAAGAGCGCCGACCTCGTGGGGCGCTTCCGCGTGCTGGGCTGCCTGGTGACGGCGCACTCGGA
GATGGGCCGCTACAAGGAGATGCTGAAGTTCGCTGTGGTGCAGATCGACACGGCTCGGGAGCTG
GAGGATGCCGACTTCCTTCTGGAGAGCTACCTGAACCTGGCACGCAGCAACGAGAAGCTGTGTG
AGTTCCACAAGACCATCTCCTACTGCAAGACTTGCGTCGGCCTGCCCGGCACCAGGGCGGGCGC
CCAGCTCGGAGGCCAGGTCAGCCTGAGCATGGGCAATGCCTTCCTGGGCCTCAGCCTCTTCCAG
AAGGCGCTGGAGAGCTTCGAGAAGGCCCTGCGCTATGCCCACAACAATGACGACACCATGCTCG
AGTGCCGCGTCTGCTGCAGCCTGGGCAGCTTCTATGCCCAGGTCAAGGACTACGAGAAAGCCCT
GTTCTTCCCCTGCAAGGCCGCAGAGCTCGTTAGCGACTACGGCAAAGGCTGGAGCCTCAAGTAC
CGGGCCATGAGCCAGTACCACATGGCTGTGGCGTACCGCCTGCTGGGCCACCTGGGCAGTGCCA
TGGAGTGTTGTGAGGAATCTATGAAGATTGCACTGCAGCACGGGGACCGGCCACTCCAGGCACT
CTGCCTGCTGTGCTTTGCTGACATCCACCGGAGCCGTGGGGACCTGGAGACAGCCTTCCCCAGG
TACGACTCTGCCATGAGCATCATGACTGAGATTGGAAACCGCCTGGGGCAGGTGCAGGTGCTGC
TGGGAGTGGCCAAATGCTGGATAGCCAGGAAAGCACTGGACAAGGCTCTGGATGTCATCGAGAA
AGCCCAGGACCTGGCGGAGGAAGTGGGGAACAAGCTAAGCCAGCTCAAGCTGCACTGCCTGAGT
GAGAGCATCTACCGCAGCAAGGGGCTGCAGCGGGAGCTGCGTGCCCATGTCGTGCGCTTCCATG
AGTGTGTGGAGGAGACTGAGCTCTACTGCGGGCTGTGTGGCGAGTCCATAGGTGAGAGGAACAG
CCGGCTGCAGGCCCTGCCCTGCTCGCACATCTTCCACCTCAGGTGCCTGCAGAACAACGGGACG
CGGAGCTGCCCCAACTGCCGCCGCTCATCCATGAAGCCTGGCTTTGTGTGAGTCCCATCAGCAG
TCCTGGGCTCCTGCTTCCCCTCCCCCTGCCCCTTCATCATGCCCAGGGCACCTGACTAGCCATA
CCTTGGATCCTGTTTACTCTTGGGGTAGCCGCCAGACCTCCTCCAAACTCAGCCAGGGCCCAGG
GCCTGCCCGCTGTTGCTCCTCCAGGCTCAGCTGACCTCCCTGCCTCTTCGTACTTTGCTCTTTA
TAGAAAAATAAACTGTTTGTACCTGA

hide sequence

Protein Sequences


Protein RefSeqs	XP_038280299	(Get FASTA)	NCBI Sequence Viewer
	XP_038356640	(Get FASTA)	NCBI Sequence Viewer
	XP_038419231	(Get FASTA)	NCBI Sequence Viewer
	XP_038483353	(Get FASTA)	NCBI Sequence Viewer
	XP_850095	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCAFP00000012765.4
	ENSCAFP00000051493.1
	ENSCAFP00000056172.1
	ENSCAFP00000065147.2
	ENSCAFP00000065382.1
	ENSCAFP00030007011.1
	ENSCAFP00030007034.1
	ENSCAFP00030007050.1
	ENSCAFP00030007081.1
	ENSCAFP00040013244.1
	ENSCAFP00040013253.1
	ENSCAFP00040013262.1
	ENSCAFP00040013279.1
	ENSCAFP00845028976
	ENSCAFP00845028976.1
	ENSCAFP00845029033.1
	ENSCAFP00845029069.1
	ENSCAFP00845029242.1

RefSeq Acc Id:

XP_850095 ⟸ XM_845002

- UniProtKB:

A0A8C0QM89 (UniProtKB/TrEMBL), A0A8P0TGK5 (UniProtKB/TrEMBL), A0A8C0LPC0 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MGQDQTKQQIEKGLQLYQSNQTEKALHVWMKVLEKSADLVGRFRVLGCLVTAHSEMGRYKEMLK
FAVVQIDTARELEDADFLLESYLNLARSNEKLCEFHKTISYCKTCVGLPGTRAGAQLGGQVSLS
MGNAFLGLSLFQKALESFEKALRYAHNNDDTMLECRVCCSLGSFYAQVKDYEKALFFPCKAAEL
VSDYGKGWSLKYRAMSQYHMAVAYRLLGHLGSAMECCEESMKIALQHGDRPLQALCLLCFADIH
RSRGDLETAFPRYDSAMSIMTEIGNRLGQVQVLLGVAKCWIARKALDKALDVIEKAQDLAEEVG
NKLSQLKLHCLSESIYRSKGLQRELRAHVVRFHECVEETELYCGLCGESIGERNSRLQALPCSH
IFHLRCLQNNGTRSCPNCRRSSMKPGFV

hide sequence

RefSeq Acc Id:

ENSCAFP00000051493 ⟸ ENSCAFT00000068306

RefSeq Acc Id:

ENSCAFP00000065382 ⟸ ENSCAFT00000076333

RefSeq Acc Id:

ENSCAFP00000012765 ⟸ ENSCAFT00000013802

RefSeq Acc Id:

ENSCAFP00000056172 ⟸ ENSCAFT00000090260

RefSeq Acc Id:

ENSCAFP00000065147 ⟸ ENSCAFT00000090999

RefSeq Acc Id:

XP_038356640 ⟸ XM_038500712

RefSeq Acc Id:

XP_038483353 ⟸ XM_038627425

RefSeq Acc Id:	XP_038280299 ⟸ XM_038424371
- UniProtKB:	A0A8C0M6C4 (UniProtKB/TrEMBL), A0A8I3P6H1 (UniProtKB/TrEMBL), A0A8C0LPC0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038419231 ⟸ XM_038563303
- UniProtKB:	A0A8C0LPC0 (UniProtKB/TrEMBL), A0A8C0QM89 (UniProtKB/TrEMBL), A0A8P0TGK5 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSCAFP00845028976 ⟸ ENSCAFT00845037006

RefSeq Acc Id:

ENSCAFP00845029033 ⟸ ENSCAFT00845037073

RefSeq Acc Id:

ENSCAFP00845029242 ⟸ ENSCAFT00845037332

RefSeq Acc Id:

ENSCAFP00845029069 ⟸ ENSCAFT00845037115

Protein Domains

Rapsyn myristoylation/linker region N-terminal RING-type

Promoters

RGD ID:

13686509

Promoter ID:

EPDNEW_C4577

Type:

single initiation site

Name:

RAPSN_1

Description:

receptor associated protein of the synapse

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	18	42,199,536 - 42,199,596	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCAFG00000008690	Ensembl, UniProtKB/TrEMBL
	ENSCAFG00030004313	UniProtKB/TrEMBL
	ENSCAFG00040008174	UniProtKB/TrEMBL
	ENSCAFG00845020952	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCAFT00000013802.5	UniProtKB/TrEMBL
	ENSCAFT00000068306.2	UniProtKB/TrEMBL
	ENSCAFT00000076333.2	UniProtKB/TrEMBL
	ENSCAFT00000090260.2	UniProtKB/TrEMBL
	ENSCAFT00000090999.2	UniProtKB/TrEMBL
	ENSCAFT00030007985.1	UniProtKB/TrEMBL
	ENSCAFT00030008009.1	UniProtKB/TrEMBL
	ENSCAFT00030008024.1	UniProtKB/TrEMBL
	ENSCAFT00030008058.1	UniProtKB/TrEMBL
	ENSCAFT00040015286.1	UniProtKB/TrEMBL
	ENSCAFT00040015297.1	UniProtKB/TrEMBL
	ENSCAFT00040015306.1	UniProtKB/TrEMBL
	ENSCAFT00040015325.1	UniProtKB/TrEMBL
	ENSCAFT00845037006	ENTREZGENE
	ENSCAFT00845037006.1	UniProtKB/TrEMBL
	ENSCAFT00845037073.1	UniProtKB/TrEMBL
	ENSCAFT00845037115.1	UniProtKB/TrEMBL
	ENSCAFT00845037332.1	UniProtKB/TrEMBL
Gene3D-CATH	1.25.40.10	UniProtKB/TrEMBL
	3.30.40.10	UniProtKB/TrEMBL
InterPro	Postsynaptic	UniProtKB/TrEMBL
	Postsynaptic_CS	UniProtKB/TrEMBL
	Rapsyn_myristoylation/link_N	UniProtKB/TrEMBL
	TPR-like_helical_dom_sf	UniProtKB/TrEMBL
	TPR_repeat	UniProtKB/TrEMBL
	Znf_RING	UniProtKB/TrEMBL
	Znf_RING/FYVE/PHD	UniProtKB/TrEMBL
KEGG Report	cfa:609725	UniProtKB/TrEMBL
NCBI Gene	RAPSN	ENTREZGENE
PANTHER	43 KDA RECEPTOR-ASSOCIATED PROTEIN OF THE SYNAPSE	UniProtKB/TrEMBL
	43 KDA RECEPTOR-ASSOCIATED PROTEIN OF THE SYNAPSE	UniProtKB/TrEMBL
Pfam	Rapsyn_N	UniProtKB/TrEMBL
	TPR_8	UniProtKB/TrEMBL
	TPR_MalT	UniProtKB/TrEMBL
	zf-RING_2	UniProtKB/TrEMBL
PRINTS	POSTSYNAPTIC	UniProtKB/TrEMBL
PROSITE	43_KD_POSTSYNAPTIC	UniProtKB/TrEMBL
	TPR	UniProtKB/TrEMBL
	ZF_RING_2	UniProtKB/TrEMBL
SMART	RING	UniProtKB/TrEMBL
	TPR	UniProtKB/TrEMBL
Superfamily-SCOP	RING/U-box	UniProtKB/TrEMBL
	SSF48452	UniProtKB/TrEMBL
UniProt	A0A8C0LPC0	ENTREZGENE
	A0A8C0M6C4	ENTREZGENE, UniProtKB/TrEMBL
	A0A8C0MBR8_CANLF	UniProtKB/TrEMBL
	A0A8C0MHB1_CANLF	UniProtKB/TrEMBL
	A0A8C0QF50_CANLF	UniProtKB/TrEMBL
	A0A8C0QG37_CANLF	UniProtKB/TrEMBL
	A0A8C0QJQ9_CANLF	UniProtKB/TrEMBL
	A0A8C0QM89	ENTREZGENE, UniProtKB/TrEMBL
	A0A8C0RCI3_CANLF	UniProtKB/TrEMBL
	A0A8I3P6H1	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I3PBU0_CANLF	UniProtKB/TrEMBL
	A0A8I3PFV0_CANLF	UniProtKB/TrEMBL
	A0A8I3S4P1_CANLF	UniProtKB/TrEMBL
	A0A8P0SDS1_CANLF	UniProtKB/TrEMBL
	A0A8P0TGK5	ENTREZGENE
UniProt Secondary	A0A8P0P1B0	UniProtKB/TrEMBL
	A0A8P0PE07	UniProtKB/TrEMBL
	A0A8P0T8C8	UniProtKB/TrEMBL
	A0A8P0TGK5	UniProtKB/TrEMBL
VGNC ID	VGNC:45350	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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