PCOLCE (procollagen C-endopeptidase enhancer)

Gene: PCOLCE (procollagen C-endopeptidase enhancer) Canis lupus familiaris

Analyze

Symbol:

PCOLCE

Name:

procollagen C-endopeptidase enhancer

RGD ID:

12273798

Description:

ENCODES a protein that exhibits collagen binding (inferred); heparin binding (inferred); peptidase activator activity (inferred); INVOLVED IN cellular response to leukemia inhibitory factor (ortholog); proteolysis (ortholog); ASSOCIATED WITH Chemical and Drug Induced Liver Injury (ortholog); genetic disease (ortholog); liver cirrhosis (ortholog); FOUND IN collagen-containing extracellular matrix (inferred); extracellular region (inferred); extracellular space (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

procollagen C-endopeptidase enhancer 1

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

CanFam3.1 - Dog CanFam3.1 Assembly

Position:

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	6	9,085,145 - 9,090,447 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	6	9,085,145 - 9,090,146 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	6	10,789,558 - 10,795,432 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	6	9,019,351 - 9,025,225 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	6	9,019,358 - 9,024,376 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	6	8,871,854 - 8,877,728 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	6	8,849,536 - 8,854,860 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	6	9,031,772 - 9,037,646 (-)	NCBI		UU_Cfam_GSD_1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Chemical and Drug Induced Liver Injury (ISO)

genetic disease (ISO)

liver cirrhosis (ISO)

pleomorphic xanthoastrocytoma (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cellular response to leukemia inhibitory factor (ISO)

proteolysis (IEA,ISO)

Cellular Component

collagen-containing extracellular matrix (IEA)

extracellular region (IEA)

extracellular space (IEA)

Molecular Function

collagen binding (IEA)

heparin binding (IEA)

peptidase activator activity (IEA)

protein binding (ISO)

References

Additional References at PubMed

PMID:22301074

Genomics

Comparative Map Data

PCOLCE
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	6	9,085,145 - 9,090,447 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	6	9,085,145 - 9,090,146 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	6	10,789,558 - 10,795,432 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	6	9,019,351 - 9,025,225 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	6	9,019,358 - 9,024,376 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	6	8,871,854 - 8,877,728 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	6	8,849,536 - 8,854,860 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	6	9,031,772 - 9,037,646 (-)	NCBI		UU_Cfam_GSD_1.0

PCOLCE
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	7	100,602,363 - 100,608,175 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	7	100,602,363 - 100,608,175 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	7	100,199,986 - 100,205,798 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	7	100,037,818 - 100,043,734 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	7	99,844,640 - 99,850,445	NCBI
Celera	7	94,929,679 - 94,935,595 (+)	NCBI		Celera
Cytogenetic Map	7	q22.1	NCBI
HuRef	7	94,831,551 - 94,837,467 (+)	NCBI		HuRef
CHM1_1	7	100,130,452 - 100,136,368 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	7	101,842,444 - 101,848,256 (+)	NCBI		T2T-CHM13v2.0
CRA_TCAGchr7v2	7	99,559,515 - 99,565,431 (+)	NCBI

Pcolce
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	137,603,369 - 137,609,666 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	137,603,365 - 137,612,046 (-)	Ensembl		GRCm39 Ensembl
GRCm38	5	137,605,105 - 137,611,522 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	137,605,103 - 137,613,784 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	5	138,046,335 - 138,052,632 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	5	137,834,897 - 137,841,156 (-)	NCBI		MGSCv36	mm8
Celera	5	134,588,390 - 134,594,725 (-)	NCBI		Celera
Cytogenetic Map	5	G2	NCBI
cM Map	5	76.59	NCBI

Pcolce
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	12	24,720,972 - 24,727,287 (+)	NCBI		GRCr8
mRatBN7.2	12	19,084,191 - 19,090,508 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	12	19,084,210 - 19,090,508 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	12	20,239,351 - 20,245,667 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	12	20,852,235 - 20,858,548 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	12	19,916,562 - 19,922,878 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	12	22,153,995 - 22,160,311 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	12	22,153,983 - 22,160,337 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	12	24,171,371 - 24,177,687 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	12	19,672,505 - 19,678,821 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	12	19,662,066 - 19,668,383 (-)	NCBI
Celera	12	20,889,573 - 20,895,889 (+)	NCBI		Celera
Cytogenetic Map	12	q12	NCBI

Pcolce
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955573	299,521 - 304,325 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955573	299,443 - 304,672 (-)	NCBI	ChiLan1.0	ChiLan1.0

PCOLCE
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	6	118,513,634 - 118,519,669 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	7	166,777,293 - 166,784,314 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	7	92,629,148 - 92,635,357 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	7	106,030,603 - 106,036,654 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	7	106,030,934 - 106,036,582 (+)	Ensembl	panpan1.1		panPan2

Pcolce
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	133,376,625 - 133,382,024 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936543	653,824 - 659,883 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936543	653,844 - 659,905 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PCOLCE
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	8,523,449 - 8,528,739 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	3	8,523,455 - 8,528,749 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	3	7,918,291 - 7,923,587 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

PCOLCE
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	28	12,604,552 - 12,610,814 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	28	12,604,526 - 12,610,814 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666070	3,693,856 - 3,700,208 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Pcolce
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624740	16,475,058 - 16,480,807 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624740	16,476,004 - 16,480,818 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in PCOLCE
42 total Variants

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	reproductive system	respiratory system	adipose tissue
High
Medium	5	1	16	1	6	1	6	1	7	8	10	6
Low		4	6	5		5		5	5
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_038477997	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038477998	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038538456	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038539262	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038539263	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038603343	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038668048	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038668049	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_854308	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AAEX04000006	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAHUQ010000067	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAQRD010000090	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAUVH010000065	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	REHQ01000006	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCAFT00000022767 ⟹ ENSCAFP00000021146

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	6	9,085,145 - 9,090,146 (-)	Ensembl

RefSeq Acc Id:

ENSCAFT00000076679 ⟹ ENSCAFP00000049022

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	6	9,085,145 - 9,090,146 (-)	Ensembl

RefSeq Acc Id:

ENSCAFT00845002423 ⟹ ENSCAFP00845001924

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	6	9,019,358 - 9,024,376 (-)	Ensembl

RefSeq Acc Id:

ENSCAFT00845002438 ⟹ ENSCAFP00845001937

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	6	9,019,358 - 9,024,376 (-)	Ensembl

RefSeq Acc Id:

XM_038477997 ⟹ XP_038333925

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	6	8,871,854 - 8,877,728 (-)	NCBI

RefSeq Acc Id:

XM_038477998 ⟹ XP_038333926

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	6	8,871,854 - 8,877,179 (-)	NCBI

RefSeq Acc Id:

XM_038538456 ⟹ XP_038394384

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
Dog10K_Boxer_Tasha	6	10,789,558 - 10,795,432 (-)	NCBI

RefSeq Acc Id:

XM_038539262 ⟹ XP_038395190

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	6	9,031,772 - 9,037,646 (-)	NCBI

RefSeq Acc Id:

XM_038539263 ⟹ XP_038395191

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	6	9,031,772 - 9,037,097 (-)	NCBI

RefSeq Acc Id:

XM_038603343 ⟹ XP_038459271

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	6	8,849,536 - 8,854,860 (-)	NCBI

RefSeq Acc Id:

XM_038668048 ⟹ XP_038523976

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	6	9,019,351 - 9,025,225 (-)	NCBI

RefSeq Acc Id:

XM_038668049 ⟹ XP_038523977

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	6	9,019,351 - 9,024,676 (-)	NCBI

RefSeq Acc Id:

XM_854308 ⟹ XP_859401

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	6	9,085,145 - 9,090,447 (-)	NCBI
Dog10K_Boxer_Tasha	6	10,789,558 - 10,794,883 (-)	NCBI

Sequence:

show sequence

GGGAGGAAGGACCAGATGCTCAGGCACTGGGCAGAGTGGGGTCCAGGTGACAGGACTTGATGCC
TGCATTGTGGCTGAGGGCTCATGCTCCTTCTGCCCTTCACTGCTCCACCCCCTACTTAGGTCAA
TATTTATGTGTCCTGGACCTAGAGAGGCCCCTGGACTCACTACTGTCCCAACTAAACTCTCCCT
GTCCCGCCTTCCCCACCGCCCGCCCCGCTGGCCAGTCCCCACGCCCACACACCCGAGGCTGCCT
CATCTGGCACTGATTATCTCCGCTGCTGCCGCTGCTGCTGCTAAACTCAGCTGCTGCCTCTGCC
TCAAGGACCCCGGCGCCTCTCCCCCCGGCCATGCTGCCTGCTGCCACAGCCTCCCTCTTGGGGC
CCCTCCTCACTGCCTGGGCCCTGCTGCCTTTCACCCAGGGCCAGACCCCCAACTATACCAGACC
TGTGTTCCTGTGTGGAGGGGATGTGACCGGGGAGTCAGGTTACGTGGCAAGTGAGGGTTTCCCC
AACCTGTACCCCCCCAATAAGGAGTGCATCTGGACAATAACGGTCCCTGAGGGCCAGACTGTGT
CCCTTTCCTTCCGAGTCTTTGATTTGGAGCTGCACCCCGCCTGCCGTTATGATGCTCTGGAGGT
CTTTGCCGGGTCTGGAACCTCGGGCCAGCGGCTTGGACGCTTCTGCGGGACCTTCCGGCCTGCG
CCCTTAGTCGCCCCCGGCAACCAGGTGACCCTGAGGATGACGGCGGACGAGGGCACGGGAGGAC
GAGGCTTCCTGCTCTGGTACAGCGGGCGGGCCACCTCAGGCACTGAGCACCAATTTTGCGGGGG
GCGGCTGGAGAAGGCCCAGGGAACCCTGACCACGCCCAACTGGCCCGAGTCCGATTACCCCCCG
GGCATCAGCTGTTCCTGGCACATCATCGCGCCCCCGGACCAGGTGATCTCGCTGACCTTCGGGA
AGTTTGACCTGGAGCCCGACACCTACTGCCGCTACGACTCGGTCAGCGTGTTCAACGGAGCCGT
GAGCGATGACGCCAAGAGGCTGGGAAAGTTCTGCGGCGACACCGCCCCGGGTCCCATCTCCTCT
GAAGGGAATGAGCTCCTCGTCCAGTTCGTCTCTGACCTCAGTGTCACGGCCGATGGCTTCTCCG
CCTCCTACAAGACCCTGCCACGAGGTGCCGCTGCCGAAGGGCAGGCCCGGAGCCCCGGGGAGGA
TGCCCGGTCAGGAGCCTCGCTCCCCAAGCCCGGACCCCCACCTGTGGAGAAGCCAAAGGCCTCA
TCGGAGGCTCAAGCAACTCCGGAAGCTCCCAATGTGCCCAATGTGTCCTGCCCAAAGCAGTGCC
GAAGGACAGGCACCTTGCAGAGCAACTTCTGTTCCAGCAGCCTGGTGGTGACCGCGACAGTGAA
GTCCATGGTTCGAGGCCCAGGGGAGGGCCTCACTGTCACTGTCAGTCTCATTGGTGCTTACAAA
ACCGGAGGCCTGGACCTGCCTTCTCCAATCACTGACACCCCCCTGAAGTTCTATGTGCCTTGCA
AGCAGTGCCCTCCCATGAAGAAAGGAGCCAGTTATCTGATGATGGGCCAAGTGGAAGAGAACAG
AGGTCCTATCCTTCCTGCAGAGAGCTTCGTGGTTCTCTACCGGCCCAACCAGGACCAGATCCTC
ACCAACCTCAGCAAGCGGAAGTGCCCCTCCCAGCCTGGAAGGGCTGCTGGGTCCCAGGCCTGAA
ACCCAGGCTACCTTCCTAGCCTGGAGCCCTAGGGACTCCTTTCTTATCCAAATAAATGTTTCTT
GACTGAG

hide sequence

Protein Sequences


Protein RefSeqs	XP_038333925	(Get FASTA)	NCBI Sequence Viewer
	XP_038333926	(Get FASTA)	NCBI Sequence Viewer
	XP_038394384	(Get FASTA)	NCBI Sequence Viewer
	XP_038395190	(Get FASTA)	NCBI Sequence Viewer
	XP_038395191	(Get FASTA)	NCBI Sequence Viewer
	XP_038459271	(Get FASTA)	NCBI Sequence Viewer
	XP_038523976	(Get FASTA)	NCBI Sequence Viewer
	XP_038523977	(Get FASTA)	NCBI Sequence Viewer
	XP_859401	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCAFP00000021146.2
	ENSCAFP00000049022.1
	ENSCAFP00030033939.1
	ENSCAFP00040021856.1
	ENSCAFP00040021901.1
	ENSCAFP00845001924
	ENSCAFP00845001924.1
	ENSCAFP00845001937
	ENSCAFP00845001937.1

RefSeq Acc Id:	XP_859401 ⟸ XM_854308
- Peptide Label:	isoform X2
- UniProtKB:	A0A8C0R0W3 (UniProtKB/TrEMBL), A0A8C0SJ81 (UniProtKB/TrEMBL), A0A8I3MHG0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MLPAATASLLGPLLTAWALLPFTQGQTPNYTRPVFLCGGDVTGESGYVASEGFPNLYPPNKECI WTITVPEGQTVSLSFRVFDLELHPACRYDALEVFAGSGTSGQRLGRFCGTFRPAPLVAPGNQVT LRMTADEGTGGRGFLLWYSGRATSGTEHQFCGGRLEKAQGTLTTPNWPESDYPPGISCSWHIIA PPDQVISLTFGKFDLEPDTYCRYDSVSVFNGAVSDDAKRLGKFCGDTAPGPISSEGNELLVQFV SDLSVTADGFSASYKTLPRGAAAEGQARSPGEDARSGASLPKPGPPPVEKPKASSEAQATPEAP NVPNVSCPKQCRRTGTLQSNFCSSSLVVTATVKSMVRGPGEGLTVTVSLIGAYKTGGLDLPSPI TDTPLKFYVPCKQCPPMKKGASYLMMGQVEENRGPILPAESFVVLYRPNQDQILTNLSKRKCPS QPGRAAGSQA hide sequence

RefSeq Acc Id:

ENSCAFP00000049022 ⟸ ENSCAFT00000076679

RefSeq Acc Id:

ENSCAFP00000021146 ⟸ ENSCAFT00000022767

RefSeq Acc Id:	XP_038333925 ⟸ XM_038477997
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038333926 ⟸ XM_038477998
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038459271 ⟸ XM_038603343
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038523976 ⟸ XM_038668048
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0YXT5 (UniProtKB/TrEMBL), A0A8I3MFU6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038523977 ⟸ XM_038668049
- Peptide Label:	isoform X2
- UniProtKB:	A0A8C0R0W3 (UniProtKB/TrEMBL), A0A8C0SJ81 (UniProtKB/TrEMBL), A0A8I3MHG0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038394384 ⟸ XM_038538456
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0YXT5 (UniProtKB/TrEMBL), A0A8I3MFU6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038395190 ⟸ XM_038539262
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0YXT5 (UniProtKB/TrEMBL), A0A8I3MFU6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038395191 ⟸ XM_038539263
- Peptide Label:	isoform X2
- UniProtKB:	A0A8C0R0W3 (UniProtKB/TrEMBL), A0A8C0SJ81 (UniProtKB/TrEMBL), A0A8I3MHG0 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSCAFP00845001937 ⟸ ENSCAFT00845002438

RefSeq Acc Id:

ENSCAFP00845001924 ⟸ ENSCAFT00845002423

Protein Domains

CUB NTR

Promoters

RGD ID:

13683531

Promoter ID:

EPDNEW_C1598

Type:

initiation region

Name:

PCOLCE_1

Description:

procollagen C-endopeptidase enhancer

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	6	9,090,183 - 9,090,243	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCAFG00000014322	Ensembl, UniProtKB/TrEMBL
	ENSCAFG00030021205	UniProtKB/TrEMBL
	ENSCAFG00040013611	UniProtKB/TrEMBL
	ENSCAFG00845001417	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCAFT00000022767.4	UniProtKB/TrEMBL
	ENSCAFT00000076679.2	UniProtKB/TrEMBL
	ENSCAFT00030038916.1	UniProtKB/TrEMBL
	ENSCAFT00040025142.1	UniProtKB/TrEMBL
	ENSCAFT00040025194.1	UniProtKB/TrEMBL
	ENSCAFT00845002423	ENTREZGENE
	ENSCAFT00845002423.1	UniProtKB/TrEMBL
	ENSCAFT00845002438	ENTREZGENE
	ENSCAFT00845002438.1	UniProtKB/TrEMBL
Gene3D-CATH	2.40.50.120	UniProtKB/TrEMBL
	2.60.120.290	UniProtKB/TrEMBL
InterPro	CUB_dom	UniProtKB/TrEMBL
	Netrin_domain	UniProtKB/TrEMBL
	Netrin_module_non-TIMP	UniProtKB/TrEMBL
	NTR_PCOLCE	UniProtKB/TrEMBL
	Sperma_CUB_dom_sf	UniProtKB/TrEMBL
	TIMP-like_OB-fold	UniProtKB/TrEMBL
NCBI Gene	PCOLCE	ENTREZGENE
PANTHER	OVOCHYMASE-RELATED	UniProtKB/TrEMBL
	PROCOLLAGEN C-ENDOPEPTIDASE ENHANCER 1	UniProtKB/TrEMBL
Pfam	CUB	UniProtKB/TrEMBL
	NTR	UniProtKB/TrEMBL
PROSITE	CUB	UniProtKB/TrEMBL
	NTR	UniProtKB/TrEMBL
SMART	C345C	UniProtKB/TrEMBL
	CUB	UniProtKB/TrEMBL
Superfamily-SCOP	SSF49854	UniProtKB/TrEMBL
	SSF50242	UniProtKB/TrEMBL
UniProt	A0A8C0R0W3	ENTREZGENE
	A0A8C0SJ81	ENTREZGENE, UniProtKB/TrEMBL
	A0A8C0YXT5	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I3MFU6	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I3MHG0	ENTREZGENE, UniProtKB/TrEMBL
VGNC ID	VGNC:44316	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD