GLI1 (GLI family zinc finger 1) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: GLI1 (GLI family zinc finger 1) Canis lupus familiaris
Analyze
Symbol: GLI1
Name: GLI family zinc finger 1
RGD ID: 12273023
Description: ENCODES a protein that exhibits DNA binding (ortholog); RNA polymerase II transcription regulatory region sequence-specific DNA binding (ortholog); sequence-specific DNA binding (ortholog); INVOLVED IN canonical Wnt signaling pathway (ortholog); cerebellar cortex morphogenesis (ortholog); dorsal/ventral pattern formation (ortholog); PARTICIPATES IN altered Hedgehog signaling pathway; Hedgehog signaling pathway; pancreatic cancer pathway; ASSOCIATED WITH acute promyelocytic leukemia (ortholog); Bardet-Biedl syndrome (ortholog); Chronic Experimental Pancreatitis (ortholog); FOUND IN axoneme (ortholog); cilium (ortholog); cytoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: glioma-associated oncogene homolog 1 (zinc finger protein); LOW QUALITY PROTEIN: zinc finger protein GLI1; zinc finger protein GLI1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1101,565,306 - 1,575,971 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl101,565,244 - 1,575,982 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha101,628,322 - 1,639,223 (+)NCBI
ROS_Cfam_1.0101,574,108 - 1,585,023 (+)NCBI
UMICH_Zoey_3.1101,552,194 - 1,563,093 (+)NCBI
UNSW_CanFamBas_1.0101,793,705 - 1,804,582 (+)NCBI
UU_Cfam_GSD_1.0101,919,034 - 1,929,946 (+)NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
axoneme  (IEA,ISO)
cilium  (ISO)
cytoplasm  (ISO)
cytosol  (IEA)
nucleoplasm  (IEA)
nucleus  (IBA,ISO)

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
GLI1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1101,565,306 - 1,575,971 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl101,565,244 - 1,575,982 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha101,628,322 - 1,639,223 (+)NCBI
ROS_Cfam_1.0101,574,108 - 1,585,023 (+)NCBI
UMICH_Zoey_3.1101,552,194 - 1,563,093 (+)NCBI
UNSW_CanFamBas_1.0101,793,705 - 1,804,582 (+)NCBI
UU_Cfam_GSD_1.0101,919,034 - 1,929,946 (+)NCBI
GLI1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1257,459,785 - 57,472,268 (+)EnsemblGRCh38hg38GRCh38
GRCh381257,459,785 - 57,472,451 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371257,853,568 - 57,866,051 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361256,140,201 - 56,152,312 (+)NCBINCBI36hg18NCBI36
Build 341256,140,200 - 56,152,312NCBI
Celera1257,507,905 - 57,520,038 (+)NCBI
Cytogenetic Map12q13.3NCBI
HuRef1254,891,792 - 54,903,925 (+)NCBIHuRef
CHM1_11257,822,031 - 57,834,164 (+)NCBICHM1_1
Gli1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3910127,165,751 - 127,177,448 (-)NCBIGRCm39mm39
GRCm39 Ensembl10127,165,751 - 127,177,843 (-)Ensembl
GRCm3810127,329,882 - 127,341,579 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl10127,329,882 - 127,341,974 (-)EnsemblGRCm38mm10GRCm38
MGSCv3710126,766,938 - 126,778,635 (-)NCBIGRCm37mm9NCBIm37
MGSCv3610126,732,834 - 126,744,528 (-)NCBImm8
Celera10129,722,485 - 129,734,187 (-)NCBICelera
Cytogenetic Map10D3NCBI
cM Map1074.5NCBI
Gli1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2763,156,926 - 63,169,579 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl763,156,926 - 63,169,251 (-)Ensembl
Rnor_6.0770,620,794 - 70,633,171 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl770,620,766 - 70,630,338 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0770,795,073 - 70,807,702 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4767,288,291 - 67,297,461 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1767,311,850 - 67,313,540 (-)NCBI
Celera760,297,162 - 60,306,332 (-)NCBICelera
Cytogenetic Map7q22NCBI
Gli1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554585,185,225 - 5,193,196 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554585,181,761 - 5,193,500 (+)NCBIChiLan1.0ChiLan1.0
GLI1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11231,710,051 - 31,722,473 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1231,710,057 - 31,722,473 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01231,453,759 - 31,466,194 (-)NCBIMhudiblu_PPA_v0panPan3
Gli1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494557,240,448 - 57,247,984 (-)NCBI
SpeTri2.0NW_0049366461,622,308 - 1,629,787 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GLI1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl522,732,516 - 22,747,421 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1522,736,325 - 22,747,421 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2524,835,305 - 24,838,895 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GLI1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11153,371,929 - 53,384,339 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl1153,375,558 - 53,385,269 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666037192,582,687 - 192,595,094 (-)NCBIVero_WHO_p1.0
Gli1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462480210,483,279 - 10,494,539 (-)NCBIHetGla_female_1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 2
Low 5 15 4 4 4 4 10 5
Below cutoff 5 7 2 6 2 6 8 8 1

Sequence


Reference Sequences
RefSeq Acc Id: ENSCAFT00000000352   ⟹   ENSCAFP00000000319
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl101,568,658 - 1,575,982 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000076814   ⟹   ENSCAFP00000058084
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl101,565,244 - 1,575,982 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000077414   ⟹   ENSCAFP00000061355
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl101,565,244 - 1,575,982 (+)Ensembl
RefSeq Acc Id: XM_038487877   ⟹   XP_038343805
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1101,552,194 - 1,563,093 (+)NCBI
RefSeq Acc Id: XM_038549772   ⟹   XP_038405700
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0101,919,034 - 1,929,946 (+)NCBI
RefSeq Acc Id: XM_038613734   ⟹   XP_038469662
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0101,793,705 - 1,804,582 (+)NCBI
RefSeq Acc Id: XM_038679094   ⟹   XP_038535022
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0101,574,108 - 1,585,023 (+)NCBI
RefSeq Acc Id: XM_538247   ⟹   XP_538247
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1101,565,306 - 1,575,971 (+)NCBI
Dog10K_Boxer_Tasha101,628,322 - 1,639,223 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_038343805 (Get FASTA)   NCBI Sequence Viewer  
  XP_038405700 (Get FASTA)   NCBI Sequence Viewer  
  XP_038469662 (Get FASTA)   NCBI Sequence Viewer  
  XP_038535022 (Get FASTA)   NCBI Sequence Viewer  
  XP_538247 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_538247   ⟸   XM_538247
- UniProtKB: E2QZT1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000061355   ⟸   ENSCAFT00000077414
RefSeq Acc Id: ENSCAFP00000000319   ⟸   ENSCAFT00000000352
RefSeq Acc Id: ENSCAFP00000058084   ⟸   ENSCAFT00000076814
RefSeq Acc Id: XP_038343805   ⟸   XM_038487877
RefSeq Acc Id: XP_038469662   ⟸   XM_038613734
RefSeq Acc Id: XP_038535022   ⟸   XM_038679094
RefSeq Acc Id: XP_038405700   ⟸   XM_038549772


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000000223 Ensembl
NCBI Gene GLI1 ENTREZGENE
UniProt E2QZT1 ENTREZGENE
VGNC ID VGNC:41256 ENTREZGENE