CD209 (CD209 molecule) - Rat Genome Database

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Gene: CD209 (CD209 molecule) Canis lupus familiaris
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Symbol: CD209
Name: CD209 molecule
RGD ID: 12271932
Description: ENCODES a protein that exhibits virus receptor activity (ortholog); INVOLVED IN B cell adhesion (ortholog); positive regulation of T cell proliferation (ortholog); positive regulation of viral life cycle (ortholog); ASSOCIATED WITH acquired immunodeficiency syndrome (ortholog); aspergillosis (ortholog); asthma (ortholog); FOUND IN external side of plasma membrane (ortholog); plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: C-type lectin domain family 4, member M; CD209 antigen; CLEC4M; DC-SIGN protein
RGD Orthologs
Human
Rat
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12052,517,759 - 52,542,085 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2052,518,036 - 52,520,942 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2052,321,405 - 52,324,255 (-)NCBI
ROS_Cfam_1.02053,046,667 - 53,049,895 (-)NCBI
UMICH_Zoey_3.12052,250,315 - 52,253,163 (-)NCBI
UNSW_CanFamBas_1.02052,694,052 - 52,696,903 (-)NCBI
UU_Cfam_GSD_1.02052,925,204 - 52,928,055 (-)NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
CD209
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12052,517,759 - 52,542,085 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2052,518,036 - 52,520,942 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2052,321,405 - 52,324,255 (-)NCBI
ROS_Cfam_1.02053,046,667 - 53,049,895 (-)NCBI
UMICH_Zoey_3.12052,250,315 - 52,253,163 (-)NCBI
UNSW_CanFamBas_1.02052,694,052 - 52,696,903 (-)NCBI
UU_Cfam_GSD_1.02052,925,204 - 52,928,055 (-)NCBI
CD209
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl197,739,993 - 7,747,564 (-)EnsemblGRCh38hg38GRCh38
GRCh38197,739,993 - 7,747,534 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37197,804,879 - 7,812,420 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36197,710,882 - 7,718,406 (-)NCBINCBI36hg18NCBI36
Build 34197,710,881 - 7,718,406NCBI
Celera197,676,294 - 7,683,878 (-)NCBI
Cytogenetic Map19p13.2NCBI
HuRef197,474,941 - 7,482,525 (-)NCBIHuRef
CHM1_1197,804,605 - 7,812,189 (-)NCBICHM1_1
Cd209
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2121,891,109 - 1,897,559 (-)NCBI
Rnor_6.0 Ensembl122,406,879 - 2,413,324 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0122,406,879 - 2,413,324 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0124,560,987 - 4,567,014 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4122,283,730 - 2,290,484 (+)NCBIRGSC3.4rn4RGSC3.4
Celera123,744,146 - 3,750,549 (-)NCBICelera
Cytogenetic Map12p12NCBI
CD209
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl271,394,390 - 71,397,969 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1271,394,414 - 71,397,711 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2271,928,204 - 71,931,502 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CD209
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.167,219,576 - 7,235,755 (-)NCBI
ChlSab1.1 Ensembl67,228,378 - 7,235,208 (-)Ensembl
Vero_WHO_p1.0NW_023666081610,911 - 626,900 (+)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 1 16 6 2 6 6 5 6
Low 4 5 4 6 8 5
Below cutoff 6 12

Sequence


Reference Sequences
RefSeq Acc Id: ENSCAFT00000029087   ⟹   ENSCAFP00000027046
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2052,518,036 - 52,520,942 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000047747   ⟹   ENSCAFP00000041221
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2052,518,036 - 52,520,876 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000061991   ⟹   ENSCAFP00000051900
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2052,518,036 - 52,520,876 (-)Ensembl
RefSeq Acc Id: NM_001130832   ⟹   NP_001124304
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12052,518,081 - 52,520,931 (-)NCBI
Dog10K_Boxer_Tasha2052,321,405 - 52,324,255 (-)NCBI
ROS_Cfam_1.02053,046,989 - 53,049,839 (-)NCBI
UMICH_Zoey_3.12052,250,315 - 52,253,163 (-)NCBI
UNSW_CanFamBas_1.02052,694,052 - 52,696,903 (-)NCBI
UU_Cfam_GSD_1.02052,925,204 - 52,928,055 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005632335   ⟹   XP_005632392
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12052,517,759 - 52,520,977 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005632336   ⟹   XP_005632393
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12052,517,759 - 52,521,000 (-)NCBI
Sequence:
RefSeq Acc Id: XM_022406247   ⟹   XP_022261955
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12052,517,759 - 52,542,085 (-)NCBI
Sequence:
RefSeq Acc Id: XM_038426481   ⟹   XP_038282409
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02053,046,667 - 53,049,876 (-)NCBI
RefSeq Acc Id: XM_038426482   ⟹   XP_038282410
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02053,046,667 - 53,049,895 (-)NCBI
RefSeq Acc Id: XM_038426483   ⟹   XP_038282411
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02053,047,181 - 53,049,895 (-)NCBI
Reference Sequences
RefSeq Acc Id: XP_005632393   ⟸   XM_005632336
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_005632392   ⟸   XM_005632335
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: NP_001124304   ⟸   NM_001130832
- UniProtKB: B3V3S6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_022261955   ⟸   XM_022406247
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSCAFP00000027046   ⟸   ENSCAFT00000029087
RefSeq Acc Id: ENSCAFP00000041221   ⟸   ENSCAFT00000047747
RefSeq Acc Id: ENSCAFP00000051900   ⟸   ENSCAFT00000061991
RefSeq Acc Id: XP_038282410   ⟸   XM_038426482
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038282409   ⟸   XM_038426481
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038282411   ⟸   XM_038426483
- Peptide Label: isoform X3
Protein Domains
C-type lectin

Promoters
RGD ID:13687066
Promoter ID:EPDNEW_C5132
Type:single initiation site
Name:CD209_1
Description:CD209 antigen
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12052,520,953 - 52,521,013EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000018314 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSCAFP00000027046 ENTREZGENE, UniProtKB/TrEMBL
  ENSCAFP00000041221 UniProtKB/TrEMBL
  ENSCAFP00000051900 UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000029087 ENTREZGENE, UniProtKB/TrEMBL
  ENSCAFT00000047747 UniProtKB/TrEMBL
  ENSCAFT00000061991 UniProtKB/TrEMBL
Gene3D-CATH 3.10.100.10 UniProtKB/TrEMBL
InterPro C-type_lectin-like UniProtKB/TrEMBL
  C-type_lectin-like/link UniProtKB/TrEMBL
  C-type_lectin_CS UniProtKB/TrEMBL
  CD209-like_CTLD UniProtKB/TrEMBL
  CTDL_fold UniProtKB/TrEMBL
KEGG Report cfa:485000 UniProtKB/TrEMBL
NCBI Gene CD209 ENTREZGENE
Pfam Lectin_C UniProtKB/TrEMBL
PROSITE C_TYPE_LECTIN_1 UniProtKB/TrEMBL
  C_TYPE_LECTIN_2 UniProtKB/TrEMBL
SMART CLECT UniProtKB/TrEMBL
Superfamily-SCOP SSF56436 UniProtKB/TrEMBL
UniProt A0A5F4CCA7_CANLF UniProtKB/TrEMBL
  A0A5K1UID9_CANLF UniProtKB/TrEMBL
  B3V3S6 ENTREZGENE, UniProtKB/TrEMBL
  B3V3S7_CANLF UniProtKB/TrEMBL
  B3V3S8_CANLF UniProtKB/TrEMBL
  J9P6D9_CANLF UniProtKB/TrEMBL
UniProt Secondary F1PU42 UniProtKB/TrEMBL