ABCA9 (ATP binding cassette subfamily A member 9) - Rat Genome Database

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Gene: ABCA9 (ATP binding cassette subfamily A member 9) Canis lupus familiaris
Analyze
Symbol: ABCA9
Name: ATP binding cassette subfamily A member 9
RGD ID: 12269572
Description: ENCODES a protein that exhibits ABC-type transporter activity (inferred); ATP binding (inferred); ATP hydrolysis activity (inferred); INVOLVED IN transmembrane transport (inferred); ASSOCIATED WITH Colorectal Neoplasms (ortholog); genetic disease (ortholog); FOUND IN intracellular membrane-bounded organelle (inferred); membrane (inferred); mitochondrial inner membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ATP-binding cassette sub-family A member 9
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1915,515,462 - 15,574,890 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl915,420,835 - 15,783,045 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha916,408,511 - 16,467,049 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0917,177,098 - 17,236,344 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl917,178,062 - 17,236,178 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1916,121,762 - 16,180,755 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0911,352,708 - 11,410,875 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0911,352,192 - 11,411,234 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
ABCA9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1915,515,462 - 15,574,890 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl915,420,835 - 15,783,045 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha916,408,511 - 16,467,049 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0917,177,098 - 17,236,344 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl917,178,062 - 17,236,178 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1916,121,762 - 16,180,755 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0911,352,708 - 11,410,875 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0911,352,192 - 11,411,234 (+)NCBIUU_Cfam_GSD_1.0
ABCA9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381768,974,488 - 69,078,977 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1768,974,488 - 69,060,949 (-)EnsemblGRCh38hg38GRCh38
GRCh371766,970,629 - 67,057,068 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361764,482,368 - 64,568,731 (-)NCBINCBI36Build 36hg18NCBI36
Build 341764,482,576 - 64,568,731NCBI
Celera1763,542,632 - 63,628,962 (-)NCBICelera
Cytogenetic Map17q24.2NCBI
HuRef1762,356,443 - 62,442,892 (-)NCBIHuRef
CHM1_11767,035,607 - 67,121,963 (-)NCBICHM1_1
T2T-CHM13v2.01769,851,402 - 69,955,867 (-)NCBIT2T-CHM13v2.0
Abca9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911109,990,919 - 110,059,532 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11109,991,575 - 110,059,022 (-)EnsemblGRCm39 Ensembl
GRCm3811110,100,749 - 110,168,274 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11110,100,749 - 110,168,196 (-)EnsemblGRCm38mm10GRCm38
MGSCv3711109,962,136 - 110,029,467 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611109,916,912 - 109,984,243 (-)NCBIMGSCv36mm8
Celera11121,836,912 - 121,904,348 (-)NCBICelera
Cytogenetic Map11E1NCBI
cM Map1173.22NCBI
Abca9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81095,577,079 - 95,638,706 (-)NCBIGRCr8
mRatBN7.21095,077,615 - 95,137,751 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1095,079,058 - 95,139,608 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01098,412,263 - 98,472,258 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1098,412,263 - 98,469,799 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01098,123,022 - 98,179,424 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41099,558,803 - 99,619,870 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11099,573,172 - 99,632,169 (-)NCBI
Celera1093,727,765 - 93,787,410 (-)NCBICelera
Cytogenetic Map10q32.1NCBI
Abca9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554783,718,503 - 3,787,865 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554783,718,494 - 3,785,147 (+)NCBIChiLan1.0ChiLan1.0
ABCA9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21985,000,715 - 85,082,067 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11789,819,486 - 89,907,727 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01762,909,042 - 62,990,807 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11768,298,474 - 68,375,091 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1768,298,474 - 68,375,077 (-)Ensemblpanpan1.1panPan2
LOC101961352
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560210,921,750 - 10,977,788 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365418,117,950 - 8,365,522 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365418,216,805 - 8,272,825 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ABCA9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1211,294,698 - 11,359,523 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11211,294,729 - 11,359,529 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21211,731,504 - 11,796,217 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ABCA9
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11652,524,331 - 52,601,860 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1652,534,259 - 52,602,108 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607723,425,692 - 23,503,534 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Abca9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248703,924,432 - 3,993,497 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248703,923,616 - 4,007,890 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in ABCA9
934 total Variants

Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCAFT00000017260   ⟹   ENSCAFP00000015973
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl915,709,412 - 15,781,197 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000017373   ⟹   ENSCAFP00000016082
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl915,420,835 - 15,647,242 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000017398   ⟹   ENSCAFP00000016107
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl915,517,291 - 15,569,377 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000017436   ⟹   ENSCAFP00000016145
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl915,421,117 - 15,569,377 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000049015   ⟹   ENSCAFP00000036655
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl915,421,117 - 15,569,377 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000069507   ⟹   ENSCAFP00000056937
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl915,420,835 - 15,569,377 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000069832   ⟹   ENSCAFP00000065759
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl915,588,961 - 15,781,197 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000076821   ⟹   ENSCAFP00000048887
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl915,709,412 - 15,783,045 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845052374   ⟹   ENSCAFP00845041086
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl917,178,062 - 17,236,178 (-)Ensembl
RefSeq Acc Id: XM_038485245   ⟹   XP_038341173
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1916,121,762 - 16,180,755 (-)NCBI
RefSeq Acc Id: XM_038546751   ⟹   XP_038402679
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0911,352,192 - 11,411,234 (+)NCBI
RefSeq Acc Id: XM_038546752   ⟹   XP_038402680
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0911,352,195 - 11,411,234 (+)NCBI
RefSeq Acc Id: XM_038610743   ⟹   XP_038466671
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0911,352,708 - 11,410,875 (+)NCBI
RefSeq Acc Id: XM_038610744   ⟹   XP_038466672
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0911,352,711 - 11,410,875 (+)NCBI
RefSeq Acc Id: XM_038628626   ⟹   XP_038484554
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha916,408,511 - 16,467,049 (-)NCBI
RefSeq Acc Id: XM_038676115   ⟹   XP_038532043
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0917,177,098 - 17,236,344 (-)NCBI
RefSeq Acc Id: XM_038676116   ⟹   XP_038532044
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0917,177,098 - 17,236,339 (-)NCBI
RefSeq Acc Id: XM_848625   ⟹   XP_853718
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1915,515,462 - 15,574,890 (-)NCBI
Dog10K_Boxer_Tasha916,408,511 - 16,467,044 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_853718   ⟸   XM_848625
- Peptide Label: isoform X2
- UniProtKB: A0A8I3Q0K5 (UniProtKB/TrEMBL),   A0A8P0SRJ8 (UniProtKB/TrEMBL),   A0A8C0M0W7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000036655   ⟸   ENSCAFT00000049015
RefSeq Acc Id: ENSCAFP00000056937   ⟸   ENSCAFT00000069507
RefSeq Acc Id: ENSCAFP00000065759   ⟸   ENSCAFT00000069832
RefSeq Acc Id: ENSCAFP00000016145   ⟸   ENSCAFT00000017436
RefSeq Acc Id: ENSCAFP00000016107   ⟸   ENSCAFT00000017398
RefSeq Acc Id: ENSCAFP00000016082   ⟸   ENSCAFT00000017373
RefSeq Acc Id: ENSCAFP00000015973   ⟸   ENSCAFT00000017260
RefSeq Acc Id: ENSCAFP00000048887   ⟸   ENSCAFT00000076821
RefSeq Acc Id: XP_038341173   ⟸   XM_038485245
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038466671   ⟸   XM_038610743
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038466672   ⟸   XM_038610744
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038532043   ⟸   XM_038676115
- Peptide Label: isoform X1
- UniProtKB: A0A8C0M0W7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038532044   ⟸   XM_038676116
- Peptide Label: isoform X2
- UniProtKB: A0A8I3Q0K5 (UniProtKB/TrEMBL),   A0A8P0SRJ8 (UniProtKB/TrEMBL),   A0A8C0M0W7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038484554   ⟸   XM_038628626
- Peptide Label: isoform X1
- UniProtKB: A0A8C0M0W7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038402679   ⟸   XM_038546751
- Peptide Label: isoform X1
- UniProtKB: A0A8C0M0W7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038402680   ⟸   XM_038546752
- Peptide Label: isoform X2
- UniProtKB: A0A8C0LZN3 (UniProtKB/TrEMBL),   A0A8C0M0W7 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845041086   ⟸   ENSCAFT00845052374
Protein Domains
ABC transporter


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000010877 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030000971 UniProtKB/TrEMBL
  ENSCAFG00845029565 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000017436.5 UniProtKB/TrEMBL
  ENSCAFT00000049015.4 UniProtKB/TrEMBL
  ENSCAFT00000069507.2 UniProtKB/TrEMBL
  ENSCAFT00030001963.1 UniProtKB/TrEMBL
  ENSCAFT00030002040.1 UniProtKB/TrEMBL
  ENSCAFT00030002062.1 UniProtKB/TrEMBL
  ENSCAFT00845052374 ENTREZGENE
  ENSCAFT00845052374.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/TrEMBL
InterPro AAA+_ATPase UniProtKB/TrEMBL
  ABC2_TM UniProtKB/TrEMBL
  ABC_transporter-like_ATP-bd UniProtKB/TrEMBL
  ABC_transporter-like_CS UniProtKB/TrEMBL
  ABCA UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
NCBI Gene ABCA9 ENTREZGENE
PANTHER ATP-BINDING CASSETTE SUB-FAMILY A MEMBER 8 UniProtKB/TrEMBL
  PTHR19229 UniProtKB/TrEMBL
  PTHR19229:SF120 UniProtKB/TrEMBL
Pfam ABC2_membrane_3 UniProtKB/TrEMBL
  ABC_tran UniProtKB/TrEMBL
PROSITE ABC_TRANSPORTER_1 UniProtKB/TrEMBL
  ABC_TRANSPORTER_2 UniProtKB/TrEMBL
SMART AAA UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt A0A8C0LXQ8_CANLF UniProtKB/TrEMBL
  A0A8C0LZN3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0M0W7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3Q0K5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0NCX9_CANLF UniProtKB/TrEMBL
  A0A8P0SRJ8 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A0A8P0P689 UniProtKB/TrEMBL