PAX8 (paired box 8) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: PAX8 (paired box 8) Canis lupus familiaris
Analyze
Symbol: PAX8
Name: paired box 8
RGD ID: 12267840
Description: ENCODES a protein that exhibits DNA binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); DNA-binding transcription factor activity (ortholog); INVOLVED IN epithelial cell differentiation (ortholog); mesonephros development (ortholog); metanephric distal convoluted tubule development (ortholog); ASSOCIATED WITH Colorectal Neoplasms (ortholog); congenital hypothyroidism (ortholog); congenital nongoitrous hypothyroidism 2 (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog)
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: paired box gene 8; paired box protein Pax-8; PAX-8
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11737,307,130 - 37,331,729 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1737,306,033 - 37,363,178 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1737,077,650 - 37,133,660 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01738,084,443 - 38,141,710 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1738,085,541 - 38,141,710 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11737,220,866 - 37,276,852 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01737,277,373 - 37,333,166 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01737,490,112 - 37,546,218 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
branching involved in ureteric bud morphogenesis  (IEA)
cell differentiation  (IEA)
cellular response to gonadotropin stimulus  (IEA)
central nervous system development  (IEA)
DNA-templated transcription  (IEA)
epithelial cell differentiation  (IEA,ISO)
inner ear morphogenesis  (IEA)
kidney development  (IEA)
kidney epithelium development  (IEA)
mesenchymal to epithelial transition involved in metanephros morphogenesis  (IEA)
mesonephric tubule development  (IEA)
mesonephros development  (IEA,ISS)
metanephric comma-shaped body morphogenesis  (IEA)
metanephric distal convoluted tubule development  (IEA,ISS)
metanephric epithelium development  (IEA)
metanephric nephron tubule formation  (IEA,ISS)
metanephric S-shaped body morphogenesis  (IEA)
metanephros development  (IEA,ISO)
negative regulation of apoptotic process involved in metanephric collecting duct development  (IEA,ISS)
negative regulation of apoptotic process involved in metanephric nephron tubule development  (IEA,ISS)
negative regulation of cardiac muscle cell apoptotic process  (IEA)
negative regulation of mesenchymal cell apoptotic process involved in metanephric nephron morphogenesis  (IEA,ISS)
negative regulation of mesenchymal cell apoptotic process involved in metanephros development  (IEA,ISS)
nervous system development  (IBA)
otic vesicle development  (IEA)
positive regulation of branching involved in ureteric bud morphogenesis  (IEA,ISS)
positive regulation of DNA-templated transcription  (IEA,ISS)
positive regulation of mesenchymal to epithelial transition involved in metanephros morphogenesis  (IEA,ISS)
positive regulation of metanephric DCT cell differentiation  (IEA,ISS)
positive regulation of thyroid hormone generation  (IEA,ISS)
positive regulation of transcription by RNA polymerase II  (IEA,ISO)
pronephric field specification  (IEA,ISS)
pronephros development  (IEA,ISS)
regulation of apoptotic process  (IEA,ISS)
regulation of DNA-templated transcription  (IEA,ISO)
regulation of metanephric nephron tubule epithelial cell differentiation  (IEA,ISS)
regulation of thyroid-stimulating hormone secretion  (IEA,ISS)
regulation of transcription by RNA polymerase II  (IBA)
S-shaped body morphogenesis  (IEA)
sensory organ development  (IBA)
sulfur compound metabolic process  (ISO)
thyroid gland development  (IEA,ISO,ISS)
urogenital system development  (IEA,ISS)
ventricular septum development  (IEA)

Cellular Component
nucleoplasm  (IEA,ISS)
nucleus  (IEA,ISS)

References
Additional References at PubMed
PMID:8652674   PMID:28346124   PMID:30032202  


Genomics

Comparative Map Data
PAX8
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11737,307,130 - 37,331,729 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1737,306,033 - 37,363,178 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1737,077,650 - 37,133,660 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01738,084,443 - 38,141,710 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1738,085,541 - 38,141,710 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11737,220,866 - 37,276,852 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01737,277,373 - 37,333,166 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01737,490,112 - 37,546,218 (-)NCBIUU_Cfam_GSD_1.0
PAX8
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382113,215,997 - 113,278,921 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2113,215,997 - 113,278,921 (-)EnsemblGRCh38hg38GRCh38
GRCh372113,973,574 - 114,036,498 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362113,690,045 - 113,752,968 (-)NCBINCBI36Build 36hg18NCBI36
Build 342113,691,170 - 113,752,728NCBI
Celera2107,358,161 - 107,421,066 (-)NCBICelera
Cytogenetic Map2q14.1NCBI
HuRef2106,427,614 - 106,522,962 (-)NCBIHuRef
CHM1_12113,977,965 - 114,040,915 (-)NCBICHM1_1
T2T-CHM13v2.02113,642,573 - 113,705,473 (-)NCBIT2T-CHM13v2.0
Pax8
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39224,310,563 - 24,365,611 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl224,310,572 - 24,365,611 (-)EnsemblGRCm39 Ensembl
GRCm38224,420,551 - 24,475,599 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl224,420,560 - 24,475,599 (-)EnsemblGRCm38mm10GRCm38
MGSCv37224,276,080 - 24,331,086 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36224,242,569 - 24,297,575 (-)NCBIMGSCv36mm8
Celera224,140,049 - 24,195,191 (-)NCBICelera
Cytogenetic Map2A3NCBI
cM Map216.43NCBI
Pax8
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8327,584,000 - 27,641,094 (-)NCBIGRCr8
mRatBN7.237,185,721 - 7,242,363 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl37,185,723 - 7,242,363 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx310,289,591 - 10,345,823 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0318,875,838 - 18,932,068 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0317,065,649 - 17,121,886 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.031,527,316 - 1,586,019 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl31,527,279 - 1,584,946 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.031,520,144 - 1,576,052 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.432,671,478 - 2,726,801 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.132,672,153 - 2,726,345 (-)NCBI
Celera32,022,899 - 2,078,650 (-)NCBICelera
Cytogenetic Map3p13NCBI
Pax8
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554701,016,289 - 1,073,796 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554701,016,226 - 1,072,643 (+)NCBIChiLan1.0ChiLan1.0
PAX8
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21214,933,395 - 14,971,937 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A14,936,160 - 14,974,705 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A88,845,877 - 88,905,266 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A114,162,110 - 114,222,865 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A114,162,110 - 114,222,865 (-)Ensemblpanpan1.1panPan2
Pax8
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629282,629,178 - 82,682,663 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367831,523,661 - 1,576,568 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367831,523,658 - 1,553,464 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PAX8
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11416,236,074 - 16,299,650 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1416,233,378 - 16,297,365 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660803,382,976 - 3,450,250 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pax8
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474913,300,606 - 13,357,903 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474913,291,880 - 13,358,066 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in PAX8
308 total Variants

Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
reproductive system
respiratory system
6 5 5 23 22 16 6 6 6 6 33 22 12 14 10

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001003248 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001389220 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038690439 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038690440 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038690441 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038690442 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038690443 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038690444 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038690445 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038690446 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038690447 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038690448 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038690449 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038690450 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038690451 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038690452 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038690453 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038690454 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038690455 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038690456 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038690457 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038690458 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038690459 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038690460 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000017 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DN351611 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DN443735 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000200 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000035 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000359 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000017 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X83591 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X83592 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSCAFT00000011697   ⟹   ENSCAFP00000010840
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1737,306,033 - 37,363,178 (-)Ensembl
Ensembl Acc Id: ENSCAFT00000011704   ⟹   ENSCAFP00000010846
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1737,307,130 - 37,331,912 (-)Ensembl
Ensembl Acc Id: ENSCAFT00000063010   ⟹   ENSCAFP00000049585
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1737,306,033 - 37,331,912 (-)Ensembl
Ensembl Acc Id: ENSCAFT00000065072   ⟹   ENSCAFP00000046515
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1737,308,448 - 37,363,178 (-)Ensembl
Ensembl Acc Id: ENSCAFT00000076302   ⟹   ENSCAFP00000049567
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1737,308,699 - 37,363,178 (-)Ensembl
Ensembl Acc Id: ENSCAFT00000090520   ⟹   ENSCAFP00000052098
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1737,306,033 - 37,360,827 (-)Ensembl
Ensembl Acc Id: ENSCAFT00845021807   ⟹   ENSCAFP00845017153
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1738,085,541 - 38,110,398 (-)Ensembl
Ensembl Acc Id: ENSCAFT00845021871   ⟹   ENSCAFP00845017204
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1738,085,569 - 38,141,710 (-)Ensembl
Ensembl Acc Id: ENSCAFT00845021942   ⟹   ENSCAFP00845017254
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1738,085,569 - 38,139,354 (-)Ensembl
Ensembl Acc Id: ENSCAFT00845021992   ⟹   ENSCAFP00845017288
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1738,087,110 - 38,141,710 (-)Ensembl
Ensembl Acc Id: ENSCAFT00845022006   ⟹   ENSCAFP00845017298
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1738,087,110 - 38,141,710 (-)Ensembl
RefSeq Acc Id: NM_001389220   ⟹   NP_001376149
RefSeq Status: VALIDATED
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha1737,077,650 - 37,133,660 (-)NCBI
ROS_Cfam_1.01738,085,569 - 38,141,710 (-)NCBI
UMICH_Zoey_3.11737,220,866 - 37,276,852 (-)NCBI
UNSW_CanFamBas_1.01737,277,373 - 37,333,166 (-)NCBI
UU_Cfam_GSD_1.01737,490,112 - 37,546,218 (-)NCBI
RefSeq Acc Id: XM_038690439   ⟹   XP_038546367
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01738,084,443 - 38,141,290 (-)NCBI
RefSeq Acc Id: XM_038690440   ⟹   XP_038546368
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01738,084,443 - 38,141,280 (-)NCBI
RefSeq Acc Id: XM_038690441   ⟹   XP_038546369
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01738,084,443 - 38,141,280 (-)NCBI
RefSeq Acc Id: XM_038690442   ⟹   XP_038546370
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01738,084,443 - 38,141,276 (-)NCBI
RefSeq Acc Id: XM_038690443   ⟹   XP_038546371
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01738,084,443 - 38,141,288 (-)NCBI
RefSeq Acc Id: XM_038690444   ⟹   XP_038546372
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01738,084,443 - 38,141,288 (-)NCBI
RefSeq Acc Id: XM_038690445   ⟹   XP_038546373
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01738,084,443 - 38,141,698 (-)NCBI
RefSeq Acc Id: XM_038690446   ⟹   XP_038546374
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01738,084,443 - 38,141,600 (-)NCBI
RefSeq Acc Id: XM_038690447   ⟹   XP_038546375
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01738,084,443 - 38,141,705 (-)NCBI
RefSeq Acc Id: XM_038690448   ⟹   XP_038546376
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01738,084,443 - 38,141,290 (-)NCBI
RefSeq Acc Id: XM_038690449   ⟹   XP_038546377
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01738,084,443 - 38,141,280 (-)NCBI
RefSeq Acc Id: XM_038690450   ⟹   XP_038546378
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01738,084,443 - 38,141,288 (-)NCBI
RefSeq Acc Id: XM_038690451   ⟹   XP_038546379
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01738,084,443 - 38,141,289 (-)NCBI
RefSeq Acc Id: XM_038690452   ⟹   XP_038546380
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01738,084,443 - 38,141,280 (-)NCBI
RefSeq Acc Id: XM_038690453   ⟹   XP_038546381
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01738,084,443 - 38,141,286 (-)NCBI
RefSeq Acc Id: XM_038690454   ⟹   XP_038546382
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01738,084,443 - 38,141,290 (-)NCBI
RefSeq Acc Id: XM_038690455   ⟹   XP_038546383
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01738,084,443 - 38,141,279 (-)NCBI
RefSeq Acc Id: XM_038690456   ⟹   XP_038546384
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01738,084,443 - 38,141,288 (-)NCBI
RefSeq Acc Id: XM_038690457   ⟹   XP_038546385
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01738,084,443 - 38,141,288 (-)NCBI
RefSeq Acc Id: XM_038690458   ⟹   XP_038546386
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01738,084,443 - 38,141,286 (-)NCBI
RefSeq Acc Id: XM_038690459   ⟹   XP_038546387
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01738,084,443 - 38,141,278 (-)NCBI
RefSeq Acc Id: XM_038690460   ⟹   XP_038546388
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01738,084,443 - 38,141,279 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001376149 (Get FASTA)   NCBI Sequence Viewer  
  XP_038546367 (Get FASTA)   NCBI Sequence Viewer  
  XP_038546368 (Get FASTA)   NCBI Sequence Viewer  
  XP_038546369 (Get FASTA)   NCBI Sequence Viewer  
  XP_038546370 (Get FASTA)   NCBI Sequence Viewer  
  XP_038546371 (Get FASTA)   NCBI Sequence Viewer  
  XP_038546372 (Get FASTA)   NCBI Sequence Viewer  
  XP_038546373 (Get FASTA)   NCBI Sequence Viewer  
  XP_038546374 (Get FASTA)   NCBI Sequence Viewer  
  XP_038546375 (Get FASTA)   NCBI Sequence Viewer  
  XP_038546376 (Get FASTA)   NCBI Sequence Viewer  
  XP_038546377 (Get FASTA)   NCBI Sequence Viewer  
  XP_038546378 (Get FASTA)   NCBI Sequence Viewer  
  XP_038546379 (Get FASTA)   NCBI Sequence Viewer  
  XP_038546380 (Get FASTA)   NCBI Sequence Viewer  
  XP_038546381 (Get FASTA)   NCBI Sequence Viewer  
  XP_038546382 (Get FASTA)   NCBI Sequence Viewer  
  XP_038546383 (Get FASTA)   NCBI Sequence Viewer  
  XP_038546384 (Get FASTA)   NCBI Sequence Viewer  
  XP_038546385 (Get FASTA)   NCBI Sequence Viewer  
  XP_038546386 (Get FASTA)   NCBI Sequence Viewer  
  XP_038546387 (Get FASTA)   NCBI Sequence Viewer  
  XP_038546388 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein CAA58571 (Get FASTA)   NCBI Sequence Viewer  
  CAA58572 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCAFP00000010840.3
  ENSCAFP00000010846.4
  ENSCAFP00000046515.1
  ENSCAFP00000049567.1
  ENSCAFP00000052098.1
  ENSCAFP00030009137.1
  ENSCAFP00030009183.1
  ENSCAFP00030009203.1
  ENSCAFP00040022207.1
  ENSCAFP00040022340.1
  ENSCAFP00040022407.1
  ENSCAFP00040022441.1
  ENSCAFP00805010484
  ENSCAFP00845017153.1
  ENSCAFP00845017204
  ENSCAFP00845017204.1
  ENSCAFP00845017254
  ENSCAFP00845017254.1
  ENSCAFP00845017288
  ENSCAFP00845017288.1
  ENSCAFP00845017298.1
GenBank Protein P47240 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Acc Id: ENSCAFP00000010846   ⟸   ENSCAFT00000011704
Ensembl Acc Id: ENSCAFP00000010840   ⟸   ENSCAFT00000011697
Ensembl Acc Id: ENSCAFP00000049585   ⟸   ENSCAFT00000063010
Ensembl Acc Id: ENSCAFP00000049567   ⟸   ENSCAFT00000076302
Ensembl Acc Id: ENSCAFP00000046515   ⟸   ENSCAFT00000065072
Ensembl Acc Id: ENSCAFP00000052098   ⟸   ENSCAFT00000090520
RefSeq Acc Id: NP_001376149   ⟸   NM_001389220
- UniProtKB: P47240 (UniProtKB/Swiss-Prot),   P47241 (UniProtKB/Swiss-Prot),   A0A8C0KWP6 (UniProtKB/TrEMBL),   A0A8I3NMV8 (UniProtKB/TrEMBL),   A0A8P0N9N0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038546375   ⟸   XM_038690447
- Peptide Label: isoform X8
- UniProtKB: A0A8I3NMV8 (UniProtKB/TrEMBL),   A0A8P0N9N0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038546373   ⟸   XM_038690445
- Peptide Label: isoform X7
- UniProtKB: A0A8I3NMV8 (UniProtKB/TrEMBL),   A0A8P0N9N0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038546374   ⟸   XM_038690446
- Peptide Label: isoform X7
- UniProtKB: A0A8I3NMV8 (UniProtKB/TrEMBL),   A0A8P0N9N0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038546376   ⟸   XM_038690448
- Peptide Label: isoform X9
- UniProtKB: A0A8C0SJZ8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038546382   ⟸   XM_038690454
- Peptide Label: isoform X15
RefSeq Acc Id: XP_038546367   ⟸   XM_038690439
- Peptide Label: isoform X1
- UniProtKB: A0A8I3NMV8 (UniProtKB/TrEMBL),   A0A8P0N9N0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038546379   ⟸   XM_038690451
- Peptide Label: isoform X12
- UniProtKB: A0A8C0SJZ8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038546385   ⟸   XM_038690457
- Peptide Label: isoform X18
RefSeq Acc Id: XP_038546384   ⟸   XM_038690456
- Peptide Label: isoform X17
RefSeq Acc Id: XP_038546372   ⟸   XM_038690444
- Peptide Label: isoform X6
- UniProtKB: A0A8C0SJZ8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038546378   ⟸   XM_038690450
- Peptide Label: isoform X11
- UniProtKB: A0A8I3NMV8 (UniProtKB/TrEMBL),   A0A8P0N9N0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038546371   ⟸   XM_038690443
- Peptide Label: isoform X5
- UniProtKB: A0A8I3NMV8 (UniProtKB/TrEMBL),   A0A8P0N9N0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038546386   ⟸   XM_038690458
- Peptide Label: isoform X19
RefSeq Acc Id: XP_038546381   ⟸   XM_038690453
- Peptide Label: isoform X14
- UniProtKB: A0A8C0SJZ8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038546380   ⟸   XM_038690452
- Peptide Label: isoform X13
- UniProtKB: A0A8C0SJZ8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038546377   ⟸   XM_038690449
- Peptide Label: isoform X10
- UniProtKB: A0A8C0SJZ8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038546368   ⟸   XM_038690440
- Peptide Label: isoform X2
- UniProtKB: A0A8I3NMV8 (UniProtKB/TrEMBL),   A0A8P0N9N0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038546369   ⟸   XM_038690441
- Peptide Label: isoform X3
- UniProtKB: A0A8I3NMV8 (UniProtKB/TrEMBL),   A0A8P0N9N0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038546388   ⟸   XM_038690460
- Peptide Label: isoform X21
RefSeq Acc Id: XP_038546383   ⟸   XM_038690455
- Peptide Label: isoform X16
RefSeq Acc Id: XP_038546387   ⟸   XM_038690459
- Peptide Label: isoform X20
- UniProtKB: A0A8C0YXY5 (UniProtKB/TrEMBL),   A0A8I3NL25 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038546370   ⟸   XM_038690442
- Peptide Label: isoform X4
- UniProtKB: A0A8I3NGE6 (UniProtKB/TrEMBL),   A0A8P0P1T1 (UniProtKB/TrEMBL),   A0A8I3NMV8 (UniProtKB/TrEMBL),   A0A8P0N9N0 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCAFP00845017298   ⟸   ENSCAFT00845022006
Ensembl Acc Id: ENSCAFP00845017288   ⟸   ENSCAFT00845021992
Ensembl Acc Id: ENSCAFP00845017153   ⟸   ENSCAFT00845021807
Ensembl Acc Id: ENSCAFP00845017204   ⟸   ENSCAFT00845021871
Ensembl Acc Id: ENSCAFP00845017254   ⟸   ENSCAFT00845021942
Protein Domains
Paired


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000007309 Ensembl, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSCAFG00030005671 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSCAFG00040013848 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSCAFG00805007267 UniProtKB/Swiss-Prot
  ENSCAFG00845012268 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000011697.6 UniProtKB/Swiss-Prot
  ENSCAFT00000011704.5 UniProtKB/TrEMBL
  ENSCAFT00000065072.2 UniProtKB/TrEMBL
  ENSCAFT00000076302.2 UniProtKB/TrEMBL
  ENSCAFT00000090520.2 UniProtKB/TrEMBL
  ENSCAFT00030010430.1 UniProtKB/Swiss-Prot
  ENSCAFT00030010489.1 UniProtKB/TrEMBL
  ENSCAFT00030010509.1 UniProtKB/TrEMBL
  ENSCAFT00040025542.1 UniProtKB/TrEMBL
  ENSCAFT00040025689.1 UniProtKB/Swiss-Prot
  ENSCAFT00040025766.1 UniProtKB/TrEMBL
  ENSCAFT00040025803.1 UniProtKB/TrEMBL
  ENSCAFT00805013382 UniProtKB/Swiss-Prot
  ENSCAFT00845021807.1 UniProtKB/TrEMBL
  ENSCAFT00845021871 ENTREZGENE
  ENSCAFT00845021871.1 UniProtKB/Swiss-Prot
  ENSCAFT00845021942 ENTREZGENE
  ENSCAFT00845021942.1 UniProtKB/TrEMBL
  ENSCAFT00845021992 ENTREZGENE
  ENSCAFT00845021992.1 UniProtKB/TrEMBL
  ENSCAFT00845022006.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.10.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Homeobox-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PAIRED_DNA-bd_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Paired_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Pax2_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PAX_fam UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WH-like_DNA-bd_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene PAX8 ENTREZGENE
PANTHER PAIRED BOX PROTEIN PAX-8 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR45636 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam PAX UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Pax2_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PRINTS PAIREDBOX UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE PAIRED_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PAIRED_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART PAX UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF46689 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A8C0KWP6 ENTREZGENE
  A0A8C0RDG5_CANLF UniProtKB/TrEMBL
  A0A8C0SJZ8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0YXY5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3NGE6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3NL25 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3NMV8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3NNA1_CANLF UniProtKB/TrEMBL
  A0A8P0N9N0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0P1T1 ENTREZGENE, UniProtKB/TrEMBL
  P47240 ENTREZGENE
  P47241 ENTREZGENE
  PAX8_CANLF UniProtKB/Swiss-Prot
UniProt Secondary P47241 UniProtKB/Swiss-Prot
VGNC ID VGNC:44279 ENTREZGENE