STARD9 (StAR related lipid transfer domain containing 9) - Rat Genome Database

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Gene: STARD9 (StAR related lipid transfer domain containing 9) Canis lupus familiaris
Analyze
Symbol: STARD9
Name: StAR related lipid transfer domain containing 9
RGD ID: 12267671
Description: ENCODES a protein that exhibits ATP binding (inferred); lipid binding (inferred); microtubule binding (inferred); INVOLVED IN spindle assembly (inferred); ASSOCIATED WITH autism spectrum disorder (ortholog); bipolar disorder (ortholog); Bloom syndrome (ortholog); FOUND IN centriole (inferred); cytoplasm (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: stAR-related lipid transfer protein 9; START domain containing 9
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1309,519,994 - 9,653,743 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl309,520,098 - 9,654,166 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha309,577,259 - 9,711,737 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0309,654,823 - 9,789,542 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1309,574,086 - 9,708,057 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0309,680,839 - 9,815,118 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0309,813,363 - 9,947,976 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
centriole  (IEA)
cytoplasm  (IEA)
nucleus  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
STARD9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1309,519,994 - 9,653,743 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl309,520,098 - 9,654,166 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha309,577,259 - 9,711,737 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0309,654,823 - 9,789,542 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1309,574,086 - 9,708,057 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0309,680,839 - 9,815,118 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0309,813,363 - 9,947,976 (+)NCBIUU_Cfam_GSD_1.0
STARD9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381542,575,606 - 42,720,998 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1542,575,606 - 42,720,998 (+)EnsemblGRCh38hg38GRCh38
GRCh371542,867,804 - 43,013,196 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361540,744,722 - 40,800,488 (+)NCBINCBI36Build 36hg18NCBI36
Build 341540,769,707 - 40,800,347NCBI
Celera1519,635,565 - 19,780,951 (+)NCBICelera
Cytogenetic Map15q15.2NCBI
HuRef1519,716,325 - 19,861,782 (+)NCBIHuRef
CHM1_11542,986,298 - 43,131,570 (+)NCBICHM1_1
T2T-CHM13v2.01540,382,607 - 40,528,130 (+)NCBIT2T-CHM13v2.0
Stard9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392120,459,567 - 120,562,371 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2120,459,602 - 120,562,376 (+)EnsemblGRCm39 Ensembl
GRCm382120,629,086 - 120,729,033 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2120,629,121 - 120,731,895 (+)EnsemblGRCm38mm10GRCm38
MGSCv372120,454,960 - 120,541,822 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362120,320,567 - 120,393,363 (+)NCBIMGSCv36mm8
Celera2121,783,495 - 121,869,440 (+)NCBICelera
Cytogenetic Map2E5NCBI
cM Map260.37NCBI
Stard9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83128,034,866 - 128,150,493 (+)NCBIGRCr8
mRatBN7.23107,581,097 - 107,672,746 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3107,581,164 - 107,673,898 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.03112,428,361 - 112,659,558 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3112,428,395 - 112,659,140 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03119,200,597 - 119,203,279 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.03118,973,922 - 119,052,775 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43107,401,960 - 107,492,695 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera3106,486,870 - 106,577,463 (+)NCBICelera
Cytogenetic Map3q35NCBI
Stard9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554169,276,026 - 9,393,842 (+)NCBIChiLan1.0ChiLan1.0
STARD9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21631,826,722 - 31,971,203 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11535,981,718 - 36,128,864 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01521,537,229 - 21,681,651 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11539,692,013 - 39,836,032 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1539,692,013 - 39,836,032 (+)Ensemblpanpan1.1panPan2
Stard9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864087,994,807 - 88,138,972 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049364715,842,887 - 5,986,988 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
STARD9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11128,656,375 - 128,808,951 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21143,551,485 - 143,701,252 (-)NCBISscrofa10.2Sscrofa10.2susScr3
STARD9
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12640,251,337 - 40,402,700 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2640,250,832 - 40,324,816 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666048100,610,097 - 100,764,202 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Stard9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248049,690,054 - 9,840,816 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in STARD9
1285 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 4 4
Low 5 5 12 6 6 6 12 8 6 6
Below cutoff 6 6 6

Sequence


Reference Sequences
RefSeq Acc Id: ENSCAFT00000017742   ⟹   ENSCAFP00000016424
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl309,520,098 - 9,654,166 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000037445   ⟹   ENSCAFP00000032959
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl309,523,290 - 9,654,166 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000048015   ⟹   ENSCAFP00000038562
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl309,520,098 - 9,654,166 (+)Ensembl
RefSeq Acc Id: XM_005638312   ⟹   XP_005638369
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1309,519,994 - 9,653,743 (+)NCBI
Dog10K_Boxer_Tasha309,577,259 - 9,711,737 (+)NCBI
Sequence:
RefSeq Acc Id: XM_038442094   ⟹   XP_038298022
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0309,654,823 - 9,789,542 (+)NCBI
RefSeq Acc Id: XM_038516576   ⟹   XP_038372504
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1309,574,086 - 9,708,057 (+)NCBI
RefSeq Acc Id: XM_038580189   ⟹   XP_038436117
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0309,813,363 - 9,947,976 (+)NCBI
RefSeq Acc Id: XM_038644470   ⟹   XP_038500398
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0309,680,840 - 9,815,118 (+)NCBI
RefSeq Acc Id: XM_038644471   ⟹   XP_038500399
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0309,680,839 - 9,811,371 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_005638369   ⟸   XM_005638312
- Peptide Label: isoform X1
- UniProtKB: A0A8C0P0B5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000038562   ⟸   ENSCAFT00000048015
RefSeq Acc Id: ENSCAFP00000016424   ⟸   ENSCAFT00000017742
RefSeq Acc Id: ENSCAFP00000032959   ⟸   ENSCAFT00000037445
RefSeq Acc Id: XP_038372504   ⟸   XM_038516576
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038500399   ⟸   XM_038644471
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038500398   ⟸   XM_038644470
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038298022   ⟸   XM_038442094
- Peptide Label: isoform X1
- UniProtKB: A0A8C0P0B5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038436117   ⟸   XM_038580189
- Peptide Label: isoform X1
- UniProtKB: A0A8C0P0B5 (UniProtKB/TrEMBL)
Protein Domains
START

Promoters
RGD ID:13688495
Promoter ID:EPDNEW_C6563
Type:initiation region
Name:STARD9_1
Description:StAR related lipid transfer domain containing 9
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1309,520,067 - 9,520,127EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000011155 Ensembl
  ENSCAFG00030021270 UniProtKB/TrEMBL
  ENSCAFG00845020765 ENTREZGENE
Ensembl Transcript ENSCAFT00030039037.1 UniProtKB/TrEMBL
  ENSCAFT00845037163 ENTREZGENE
Gene3D-CATH 2.60.200.20 UniProtKB/TrEMBL
  3.30.530.20 UniProtKB/TrEMBL
  Kinesin motor domain UniProtKB/TrEMBL
InterPro FHA_dom UniProtKB/TrEMBL
  Kinesin_motor_dom_sf UniProtKB/TrEMBL
  SMAD_FHA_dom_sf UniProtKB/TrEMBL
  START-like_dom_sf UniProtKB/TrEMBL
  START_lipid-bd_dom UniProtKB/TrEMBL
NCBI Gene STARD9 ENTREZGENE
PANTHER STAR-RELATED LIPID TRANSFER PROTEIN 9 UniProtKB/TrEMBL
  STAR-RELATED LIPID TRANSFER PROTEIN 9 UniProtKB/TrEMBL
Pfam FHA UniProtKB/TrEMBL
  START UniProtKB/TrEMBL
PROSITE START UniProtKB/TrEMBL
SMART FHA UniProtKB/TrEMBL
Superfamily-SCOP Bet v1-like UniProtKB/TrEMBL
  SMAD/FHA domain UniProtKB/TrEMBL
UniProt A0A8C0P0B5 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:46889 ENTREZGENE