CCNE2 (cyclin E2) - Rat Genome Database

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Gene: CCNE2 (cyclin E2) Canis lupus familiaris
Analyze
Symbol: CCNE2
Name: cyclin E2
RGD ID: 12266988
Description: ENCODES a protein that exhibits protein kinase binding (ortholog); INVOLVED IN chromosome organization involved in meiotic cell cycle (ortholog); DNA replication initiation (ortholog); homologous chromosome pairing at meiosis (ortholog); PARTICIPATES IN G1/S transition pathway; ASSOCIATED WITH castration-resistant prostate carcinoma (ortholog); endometriosis (ortholog); head and neck squamous cell carcinoma (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: G1/S-specific cyclin-E2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12939,534,872 - 39,551,141 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2939,534,968 - 39,546,566 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2939,695,158 - 39,709,126 (-)NCBI
ROS_Cfam_1.02939,737,647 - 39,751,438 (-)NCBI
UMICH_Zoey_3.12939,749,904 - 39,763,614 (-)NCBI
UNSW_CanFamBas_1.02939,745,755 - 39,759,521 (-)NCBI
UU_Cfam_GSD_1.02940,186,991 - 40,200,957 (-)NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Molecular Pathway Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
CCNE2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12939,534,872 - 39,551,141 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2939,534,968 - 39,546,566 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2939,695,158 - 39,709,126 (-)NCBI
ROS_Cfam_1.02939,737,647 - 39,751,438 (-)NCBI
UMICH_Zoey_3.12939,749,904 - 39,763,614 (-)NCBI
UNSW_CanFamBas_1.02939,745,755 - 39,759,521 (-)NCBI
UU_Cfam_GSD_1.02940,186,991 - 40,200,957 (-)NCBI
CCNE2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl894,879,770 - 94,896,678 (-)EnsemblGRCh38hg38GRCh38
GRCh38894,880,224 - 94,896,671 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37895,892,452 - 95,907,429 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36895,961,628 - 95,976,660 (-)NCBINCBI36hg18NCBI36
Build 34895,961,630 - 95,976,658NCBI
Celera892,077,652 - 92,092,680 (-)NCBI
Cytogenetic Map8q22.1NCBI
HuRef891,100,427 - 91,115,467 (-)NCBIHuRef
CHM1_1895,932,798 - 95,947,824 (-)NCBICHM1_1
Ccne2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39411,190,489 - 11,204,779 (+)NCBIGRCm39mm39
GRCm39 Ensembl411,191,351 - 11,204,779 (+)Ensembl
GRCm38411,190,433 - 11,204,779 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl411,191,351 - 11,204,779 (+)EnsemblGRCm38mm10GRCm38
MGSCv37411,118,501 - 11,131,926 (+)NCBIGRCm37mm9NCBIm37
MGSCv36411,118,501 - 11,131,829 (+)NCBImm8
Celera411,001,670 - 11,015,258 (+)NCBICelera
Cytogenetic Map4A1NCBI
Ccne2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2524,285,078 - 24,298,258 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl524,284,922 - 24,297,632 (+)Ensembl
Rnor_6.0524,434,077 - 24,446,406 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl524,434,872 - 24,446,406 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0529,159,666 - 29,171,995 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4525,032,748 - 25,044,509 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1525,032,749 - 25,042,590 (+)NCBI
Celera523,504,417 - 23,515,951 (+)NCBICelera
Cytogenetic Map5q13NCBI
Ccne2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541711,027,749 - 11,040,017 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541711,027,749 - 11,039,945 (-)NCBIChiLan1.0ChiLan1.0
CCNE2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1893,702,104 - 93,717,151 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl893,702,104 - 93,717,151 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0891,499,647 - 91,518,488 (-)NCBIMhudiblu_PPA_v0panPan3
Ccne2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530339,939,436 - 39,953,135 (+)NCBI
SpeTri2.0NW_0049365447,839,730 - 7,852,251 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CCNE2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl441,804,359 - 41,822,453 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1441,802,090 - 41,821,870 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2445,119,630 - 45,139,377 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CCNE2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1889,846,670 - 89,863,432 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl889,848,077 - 89,862,037 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603950,971,304 - 50,986,479 (+)NCBIVero_WHO_p1.0
Ccne2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247632,242,584 - 2,258,332 (-)NCBIHetGla_female_1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 1 8
Low 5 5 22 6 6 6 5 6 12 10 6
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_022412428 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038441650 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038441651 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038441652 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038441653 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038461010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038461011 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038461012 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038461013 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038516218 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038516219 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038516220 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038516221 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038579794 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038579796 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038579797 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038579798 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038644030 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038644031 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038644032 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038644034 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000029 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000306 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000073 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000364 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000029 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCAFT00000014969   ⟹   ENSCAFP00000013855
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2939,534,968 - 39,546,566 (-)Ensembl
RefSeq Acc Id: XM_038441650   ⟹   XP_038297578
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02939,737,647 - 39,751,189 (-)NCBI
RefSeq Acc Id: XM_038441651   ⟹   XP_038297579
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02939,737,647 - 39,751,438 (-)NCBI
RefSeq Acc Id: XM_038441652   ⟹   XP_038297580
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02939,737,647 - 39,750,377 (-)NCBI
RefSeq Acc Id: XM_038441653   ⟹   XP_038297581
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02939,737,647 - 39,750,252 (-)NCBI
RefSeq Acc Id: XM_038461010   ⟹   XP_038316938
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha2939,695,158 - 39,708,878 (-)NCBI
RefSeq Acc Id: XM_038461011   ⟹   XP_038316939
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha2939,695,158 - 39,709,126 (-)NCBI
RefSeq Acc Id: XM_038461012   ⟹   XP_038316940
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha2939,695,158 - 39,708,110 (-)NCBI
RefSeq Acc Id: XM_038461013   ⟹   XP_038316941
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha2939,695,158 - 39,707,985 (-)NCBI
RefSeq Acc Id: XM_038516218   ⟹   XP_038372146
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12939,749,904 - 39,763,367 (-)NCBI
RefSeq Acc Id: XM_038516219   ⟹   XP_038372147
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12939,749,904 - 39,763,614 (-)NCBI
RefSeq Acc Id: XM_038516220   ⟹   XP_038372148
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12939,749,904 - 39,762,607 (-)NCBI
RefSeq Acc Id: XM_038516221   ⟹   XP_038372149
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12939,749,904 - 39,762,482 (-)NCBI
RefSeq Acc Id: XM_038579794   ⟹   XP_038435722
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02940,186,991 - 40,200,708 (-)NCBI
RefSeq Acc Id: XM_038579796   ⟹   XP_038435724
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02940,186,991 - 40,200,957 (-)NCBI
RefSeq Acc Id: XM_038579797   ⟹   XP_038435725
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02940,186,991 - 40,199,946 (-)NCBI
RefSeq Acc Id: XM_038579798   ⟹   XP_038435726
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02940,186,991 - 40,199,821 (-)NCBI
RefSeq Acc Id: XM_038644030   ⟹   XP_038499958
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02939,745,755 - 39,759,274 (-)NCBI
RefSeq Acc Id: XM_038644031   ⟹   XP_038499959
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02939,745,755 - 39,759,521 (-)NCBI
RefSeq Acc Id: XM_038644032   ⟹   XP_038499960
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02939,745,755 - 39,758,463 (-)NCBI
RefSeq Acc Id: XM_038644034   ⟹   XP_038499962
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02939,745,755 - 39,758,338 (-)NCBI
Reference Sequences
RefSeq Acc Id: ENSCAFP00000013855   ⟸   ENSCAFT00000014969
RefSeq Acc Id: XP_038372147   ⟸   XM_038516219
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038372146   ⟸   XM_038516218
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038372148   ⟸   XM_038516220
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038372149   ⟸   XM_038516221
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038499959   ⟸   XM_038644031
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038499958   ⟸   XM_038644030
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038499960   ⟸   XM_038644032
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038499962   ⟸   XM_038644034
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038297579   ⟸   XM_038441651
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038297578   ⟸   XM_038441650
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038297580   ⟸   XM_038441652
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038297581   ⟸   XM_038441653
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038316939   ⟸   XM_038461011
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038316938   ⟸   XM_038461010
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038316940   ⟸   XM_038461012
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038316941   ⟸   XM_038461013
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038435724   ⟸   XM_038579796
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038435722   ⟸   XM_038579794
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038435725   ⟸   XM_038579797
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038435726   ⟸   XM_038579798
- Peptide Label: isoform X3
Protein Domains
Cyclin N-terminal


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000009408 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00845016153 ENTREZGENE
Ensembl Protein ENSCAFP00000013855 UniProtKB/TrEMBL
  ENSCAFP00845022624 ENTREZGENE
Ensembl Transcript ENSCAFT00000014969 UniProtKB/TrEMBL
  ENSCAFT00845028743 ENTREZGENE
InterPro Cyclin UniProtKB/TrEMBL
  Cyclin-like UniProtKB/TrEMBL
  Cyclin-like_sf UniProtKB/TrEMBL
  Cyclin_C-dom UniProtKB/TrEMBL
  Cyclin_E UniProtKB/TrEMBL
  Cyclin_N UniProtKB/TrEMBL
NCBI Gene CCNE2 ENTREZGENE
PANTHER PTHR10177 UniProtKB/TrEMBL
  PTHR10177:SF70 UniProtKB/TrEMBL
Pfam Cyclin_C UniProtKB/TrEMBL
  Cyclin_N UniProtKB/TrEMBL
PIRSF Cyclin_A_B_D_E UniProtKB/TrEMBL
PROSITE CYCLINS UniProtKB/TrEMBL
SMART CYCLIN UniProtKB/TrEMBL
  Cyclin_C UniProtKB/TrEMBL
Superfamily-SCOP SSF47954 UniProtKB/TrEMBL
UniProt F1PMM3_CANLF UniProtKB/TrEMBL
VGNC ID VGNC:54109 ENTREZGENE