SIN3A (SIN3 transcription regulator family member A) - Rat Genome Database

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Gene: SIN3A (SIN3 transcription regulator family member A) Canis lupus familiaris
Analyze
Symbol: SIN3A
Name: SIN3 transcription regulator family member A
RGD ID: 12266760
Description: ENCODES a protein that exhibits chromatin binding (ortholog); DNA binding (ortholog); protein-containing complex binding (ortholog); INVOLVED IN activation of innate immune response (ortholog); aging (ortholog); cellular protein localization (ortholog); PARTICIPATES IN DNA modification pathway; Hedgehog signaling pathway; ASSOCIATED WITH Agenesis of Corpus Callosum (ortholog); autism spectrum disorder (ortholog); autistic disorder (ortholog); FOUND IN chromatin (ortholog); histone deacetylase complex (ortholog); kinetochore (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: paired amphipathic helix protein Sin3a; SIN3 homolog A, transcription regulator; SIN3 transcription regulator homolog A
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13038,231,844 - 38,306,665 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3038,232,680 - 38,382,635 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3038,162,224 - 38,237,534 (-)NCBI
ROS_Cfam_1.03038,436,823 - 38,512,188 (-)NCBI
UMICH_Zoey_3.13038,389,129 - 38,464,067 (-)NCBI
UNSW_CanFamBas_1.03038,434,094 - 38,509,422 (-)NCBI
UU_Cfam_GSD_1.03038,670,990 - 38,745,906 (-)NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
SIN3A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13038,231,844 - 38,306,665 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3038,232,680 - 38,382,635 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3038,162,224 - 38,237,534 (-)NCBI
ROS_Cfam_1.03038,436,823 - 38,512,188 (-)NCBI
UMICH_Zoey_3.13038,389,129 - 38,464,067 (-)NCBI
UNSW_CanFamBas_1.03038,434,094 - 38,509,422 (-)NCBI
UU_Cfam_GSD_1.03038,670,990 - 38,745,906 (-)NCBI
SIN3A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1575,369,379 - 75,455,842 (-)EnsemblGRCh38hg38GRCh38
GRCh381575,369,379 - 75,455,819 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371575,661,720 - 75,748,156 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361573,450,328 - 73,530,979 (-)NCBINCBI36hg18NCBI36
Build 341573,450,329 - 73,530,979NCBI
Celera1552,588,161 - 52,674,772 (-)NCBI
Cytogenetic Map15q24.2NCBI
HuRef1552,420,097 - 52,506,377 (-)NCBIHuRef
CHM1_11575,780,322 - 75,866,699 (-)NCBICHM1_1
Sin3a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39956,979,271 - 57,035,652 (+)NCBIGRCm39mm39
GRCm39 Ensembl956,979,324 - 57,035,650 (+)Ensembl
GRCm38957,071,991 - 57,128,368 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl957,072,040 - 57,128,366 (+)EnsemblGRCm38mm10GRCm38
MGSCv37956,919,847 - 56,976,175 (+)NCBIGRCm37mm9NCBIm37
MGSCv36956,874,519 - 56,926,290 (+)NCBImm8
Celera954,295,792 - 54,352,077 (+)NCBICelera
Cytogenetic Map9BNCBI
cM Map930.89NCBI
Sin3a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2857,481,539 - 57,536,195 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl857,481,573 - 57,536,192 (+)Ensembl
Rnor_6.0861,748,590 - 61,803,314 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl861,762,768 - 61,803,099 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0860,323,131 - 60,373,454 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4860,832,595 - 60,884,764 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1860,851,648 - 60,904,028 (+)NCBI
Celera856,953,107 - 57,002,726 (+)NCBICelera
Cytogenetic Map8q24NCBI
Sin3a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554502,808,130 - 2,870,450 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554502,804,551 - 2,870,450 (+)NCBIChiLan1.0ChiLan1.0
SIN3A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11573,881,500 - 73,966,560 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1573,881,500 - 73,966,506 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01554,285,587 - 54,371,376 (-)NCBIMhudiblu_PPA_v0panPan3
Sin3a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640116,357,106 - 116,416,720 (-)NCBI
SpeTri2.0NW_00493647134,206,084 - 34,260,538 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SIN3A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl758,176,166 - 58,245,762 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1758,171,821 - 58,246,126 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2762,861,102 - 62,934,329 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SIN3A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1267,971,208 - 8,060,888 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl267,975,484 - 8,058,278 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666048133,632,174 - 133,722,014 (-)NCBIVero_WHO_p1.0
Sin3a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624894300,027 - 388,397 (-)NCBIHetGla_female_1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 4 16 4 6 8 10 1
Low 1 5 6 6 2 6 6 4 8 5
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_014109583 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038443000 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038443001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038443002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038461288 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038461289 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038517426 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038517427 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038517428 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038581033 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038581034 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038581035 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038645403 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038645404 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038645406 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_535546 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000030 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000311 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000075 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000365 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000030 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_014109583   ⟹   XP_013965058
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.13038,231,844 - 38,306,665 (-)NCBI
Dog10K_Boxer_Tasha3038,162,224 - 38,237,534 (-)NCBI
Sequence:
RefSeq Acc Id: XM_038443000   ⟹   XP_038298928
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.03038,436,823 - 38,508,229 (-)NCBI
RefSeq Acc Id: XM_038443001   ⟹   XP_038298929
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.03038,436,823 - 38,508,229 (-)NCBI
RefSeq Acc Id: XM_038443002   ⟹   XP_038298930
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.03038,436,823 - 38,512,188 (-)NCBI
RefSeq Acc Id: XM_038461288   ⟹   XP_038317216
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha3038,162,224 - 38,233,577 (-)NCBI
RefSeq Acc Id: XM_038461289   ⟹   XP_038317217
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha3038,162,224 - 38,233,577 (-)NCBI
RefSeq Acc Id: XM_038517426   ⟹   XP_038373354
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.13038,389,129 - 38,460,110 (-)NCBI
RefSeq Acc Id: XM_038517427   ⟹   XP_038373355
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.13038,389,129 - 38,460,110 (-)NCBI
RefSeq Acc Id: XM_038517428   ⟹   XP_038373356
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.13038,389,129 - 38,464,067 (-)NCBI
RefSeq Acc Id: XM_038581033   ⟹   XP_038436961
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.03038,670,990 - 38,741,948 (-)NCBI
RefSeq Acc Id: XM_038581034   ⟹   XP_038436962
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.03038,670,990 - 38,741,948 (-)NCBI
RefSeq Acc Id: XM_038581035   ⟹   XP_038436963
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.03038,670,990 - 38,745,906 (-)NCBI
RefSeq Acc Id: XM_038645403   ⟹   XP_038501331
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.03038,434,094 - 38,505,467 (-)NCBI
RefSeq Acc Id: XM_038645404   ⟹   XP_038501332
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.03038,434,094 - 38,505,467 (-)NCBI
RefSeq Acc Id: XM_038645406   ⟹   XP_038501334
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.03038,434,094 - 38,509,422 (-)NCBI
Reference Sequences
RefSeq Acc Id: XP_013965058   ⟸   XM_014109583
- Sequence:
RefSeq Acc Id: XP_038373356   ⟸   XM_038517428
RefSeq Acc Id: XP_038373355   ⟸   XM_038517427
RefSeq Acc Id: XP_038373354   ⟸   XM_038517426
RefSeq Acc Id: XP_038501334   ⟸   XM_038645406
RefSeq Acc Id: XP_038501332   ⟸   XM_038645404
RefSeq Acc Id: XP_038501331   ⟸   XM_038645403
RefSeq Acc Id: XP_038298930   ⟸   XM_038443002
RefSeq Acc Id: XP_038298929   ⟸   XM_038443001
RefSeq Acc Id: XP_038298928   ⟸   XM_038443000
RefSeq Acc Id: XP_038317217   ⟸   XM_038461289
RefSeq Acc Id: XP_038317216   ⟸   XM_038461288
RefSeq Acc Id: XP_038436963   ⟸   XM_038581035
RefSeq Acc Id: XP_038436962   ⟸   XM_038581034
RefSeq Acc Id: XP_038436961   ⟸   XM_038581033


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000018010 Ensembl
NCBI Gene SIN3A ENTREZGENE
VGNC ID VGNC:46177 ENTREZGENE