KDM5B (lysine demethylase 5B) - Rat Genome Database

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Gene: KDM5B (lysine demethylase 5B) Canis lupus familiaris
Analyze
Symbol: KDM5B
Name: lysine demethylase 5B
RGD ID: 12261075
Description: ENCODES a protein that exhibits dioxygenase activity (inferred); DNA binding (inferred); histone binding (inferred); INVOLVED IN branching involved in mammary gland duct morphogenesis (ortholog); cellular response to fibroblast growth factor stimulus (ortholog); cellular response to leukemia inhibitory factor (ortholog); PARTICIPATES IN histone modification pathway; ASSOCIATED WITH autism spectrum disorder (ortholog); autosomal recessive intellectual developmental disorder 65 (ortholog); bladder exstrophy-epispadias-cloacal exstrophy complex (ortholog); FOUND IN chromatin (inferred); cytosol (inferred); nucleoplasm (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: JARID1B; jumonji, AT rich interactive domain 1B; lysine-specific demethylase 5B
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.17336,452 - 415,568 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl7330,705 - 412,386 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha7389,052 - 475,184 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.07343,885 - 430,080 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl7339,836 - 422,462 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.17332,707 - 418,792 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.07441,516 - 527,633 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.07464,790 - 550,918 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
KDM5B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.17336,452 - 415,568 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl7330,705 - 412,386 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha7389,052 - 475,184 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.07343,885 - 430,080 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl7339,836 - 422,462 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.17332,707 - 418,792 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.07441,516 - 527,633 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.07464,790 - 550,918 (+)NCBIUU_Cfam_GSD_1.0
KDM5B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381202,724,495 - 202,808,421 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1202,724,495 - 202,808,487 (-)EnsemblGRCh38hg38GRCh38
GRCh371202,693,623 - 202,777,549 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361200,963,155 - 201,044,172 (-)NCBINCBI36Build 36hg18NCBI36
Build 341199,428,188 - 199,509,206NCBI
Celera1175,824,418 - 175,906,769 (-)NCBICelera
Cytogenetic Map1q32.1NCBI
HuRef1173,862,355 - 173,943,136 (-)NCBIHuRef
CHM1_11204,118,752 - 204,199,788 (-)NCBICHM1_1
T2T-CHM13v2.01201,986,695 - 202,071,080 (-)NCBIT2T-CHM13v2.0
Kdm5b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391134,487,916 - 134,560,621 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1134,487,909 - 134,563,023 (+)EnsemblGRCm39 Ensembl
GRCm381134,560,178 - 134,632,878 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1134,560,171 - 134,635,285 (+)EnsemblGRCm38mm10GRCm38
MGSCv371136,456,755 - 136,529,455 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361136,376,606 - 136,449,288 (+)NCBIMGSCv36mm8
Celera1137,167,324 - 137,243,758 (+)NCBICelera
Cytogenetic Map1E4NCBI
cM Map158.24NCBI
Kdm5b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81348,554,367 - 48,625,721 (+)NCBIGRCr8
mRatBN7.21346,001,589 - 46,073,868 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1346,002,542 - 46,073,872 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1348,608,619 - 48,679,295 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01349,896,685 - 49,967,365 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01347,162,325 - 47,233,666 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01351,384,371 - 51,455,392 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1351,384,389 - 51,455,357 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01356,438,019 - 56,509,593 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41347,502,602 - 47,576,946 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1346,328,788 - 46,400,255 (+)NCBICelera
Cytogenetic Map13q13NCBI
Kdm5b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540638,755,220 - 38,823,088 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540638,755,220 - 38,823,094 (-)NCBIChiLan1.0ChiLan1.0
KDM5B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2146,574,059 - 46,654,480 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1146,540,718 - 46,623,372 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01178,323,073 - 178,406,608 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11182,620,358 - 182,702,994 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1182,622,425 - 182,702,994 (-)Ensemblpanpan1.1panPan2
Kdm5b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934472,547,343 - 72,626,164 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365671,781,995 - 1,863,461 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365671,782,056 - 1,860,861 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KDM5B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1024,736,838 - 24,831,447 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11024,739,115 - 24,831,537 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21029,186,615 - 29,191,730 (-)NCBISscrofa10.2Sscrofa10.2susScr3
KDM5B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12526,599,740 - 26,685,256 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2526,600,736 - 26,683,632 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605527,379,047 - 27,463,383 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Kdm5b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248078,011,878 - 8,093,758 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248078,011,731 - 8,091,352 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in KDM5B
435 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 2 14 3 6 8 8 10
Low 3 5 8 6 3 6 6 4 6
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_022421677 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038480526 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038480527 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038480528 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038480529 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038480530 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038541853 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038541854 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038541855 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038541856 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038541857 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038560573 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038560574 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038560575 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038560576 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038560577 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038605982 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038605983 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038605984 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038605985 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038605986 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038605987 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038605988 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038670692 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038670693 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038670694 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038670695 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038670696 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005327919 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005361779 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005371766 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005396287 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005429490 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000080 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000093 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000022 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSCAFT00000016655   ⟹   ENSCAFP00000015414
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl7361,935 - 411,601 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000084252   ⟹   ENSCAFP00000047456
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl7330,705 - 412,386 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845026628   ⟹   ENSCAFP00845020983
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl7339,836 - 422,462 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845026747   ⟹   ENSCAFP00845021071
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl7343,797 - 422,462 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845026790   ⟹   ENSCAFP00845021098
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl7343,797 - 420,456 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845026824   ⟹   ENSCAFP00845021124
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl7343,900 - 422,462 (+)Ensembl
RefSeq Acc Id: XM_038480526   ⟹   XP_038336454
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.17332,722 - 409,411 (+)NCBI
RefSeq Acc Id: XM_038480527   ⟹   XP_038336455
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.17332,722 - 413,460 (+)NCBI
RefSeq Acc Id: XM_038480528   ⟹   XP_038336456
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.17332,722 - 414,377 (+)NCBI
RefSeq Acc Id: XM_038480529   ⟹   XP_038336457
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.17332,707 - 413,115 (+)NCBI
RefSeq Acc Id: XM_038480530   ⟹   XP_038336458
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.17334,812 - 413,115 (+)NCBI
RefSeq Acc Id: XM_038541853   ⟹   XP_038397781
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.07464,805 - 541,537 (+)NCBI
RefSeq Acc Id: XM_038541854   ⟹   XP_038397782
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.07464,805 - 545,586 (+)NCBI
RefSeq Acc Id: XM_038541855   ⟹   XP_038397783
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.07464,805 - 546,503 (+)NCBI
RefSeq Acc Id: XM_038541856   ⟹   XP_038397784
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.07464,790 - 545,241 (+)NCBI
RefSeq Acc Id: XM_038541857   ⟹   XP_038397785
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.07466,909 - 545,241 (+)NCBI
RefSeq Acc Id: XM_038560573   ⟹   XP_038416501
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha7389,067 - 465,809 (+)NCBI
RefSeq Acc Id: XM_038560574   ⟹   XP_038416502
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha7389,067 - 469,858 (+)NCBI
RefSeq Acc Id: XM_038560575   ⟹   XP_038416503
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha7389,067 - 470,775 (+)NCBI
RefSeq Acc Id: XM_038560576   ⟹   XP_038416504
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha7389,052 - 469,513 (+)NCBI
RefSeq Acc Id: XM_038560577   ⟹   XP_038416505
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha7391,164 - 469,513 (+)NCBI
RefSeq Acc Id: XM_038605982   ⟹   XP_038461910
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.07442,818 - 521,956 (+)NCBI
RefSeq Acc Id: XM_038605983   ⟹   XP_038461911
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.07442,818 - 521,956 (+)NCBI
RefSeq Acc Id: XM_038605984   ⟹   XP_038461912
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.07441,531 - 518,252 (+)NCBI
RefSeq Acc Id: XM_038605985   ⟹   XP_038461913
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.07441,531 - 522,301 (+)NCBI
RefSeq Acc Id: XM_038605986   ⟹   XP_038461914
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.07441,531 - 523,217 (+)NCBI
RefSeq Acc Id: XM_038605987   ⟹   XP_038461915
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.07441,516 - 521,956 (+)NCBI
RefSeq Acc Id: XM_038605988   ⟹   XP_038461916
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.07443,627 - 521,956 (+)NCBI
RefSeq Acc Id: XM_038670692   ⟹   XP_038526620
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.07343,900 - 420,719 (+)NCBI
RefSeq Acc Id: XM_038670693   ⟹   XP_038526621
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.07343,900 - 424,768 (+)NCBI
RefSeq Acc Id: XM_038670694   ⟹   XP_038526622
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.07343,900 - 425,684 (+)NCBI
RefSeq Acc Id: XM_038670695   ⟹   XP_038526623
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.07343,885 - 424,423 (+)NCBI
RefSeq Acc Id: XM_038670696   ⟹   XP_038526624
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.07346,025 - 424,423 (+)NCBI
RefSeq Acc Id: XR_005327919
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.17332,722 - 418,792 (+)NCBI
RefSeq Acc Id: XR_005361779
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.07464,805 - 550,918 (+)NCBI
RefSeq Acc Id: XR_005371766
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha7389,067 - 475,184 (+)NCBI
RefSeq Acc Id: XR_005396287
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.07441,531 - 527,633 (+)NCBI
RefSeq Acc Id: XR_005429490
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.07343,900 - 430,080 (+)NCBI
Protein Sequences
Protein RefSeqs XP_038336454 (Get FASTA)   NCBI Sequence Viewer  
  XP_038336455 (Get FASTA)   NCBI Sequence Viewer  
  XP_038336456 (Get FASTA)   NCBI Sequence Viewer  
  XP_038336457 (Get FASTA)   NCBI Sequence Viewer  
  XP_038336458 (Get FASTA)   NCBI Sequence Viewer  
  XP_038397781 (Get FASTA)   NCBI Sequence Viewer  
  XP_038397782 (Get FASTA)   NCBI Sequence Viewer  
  XP_038397783 (Get FASTA)   NCBI Sequence Viewer  
  XP_038397784 (Get FASTA)   NCBI Sequence Viewer  
  XP_038397785 (Get FASTA)   NCBI Sequence Viewer  
  XP_038416501 (Get FASTA)   NCBI Sequence Viewer  
  XP_038416502 (Get FASTA)   NCBI Sequence Viewer  
  XP_038416503 (Get FASTA)   NCBI Sequence Viewer  
  XP_038416504 (Get FASTA)   NCBI Sequence Viewer  
  XP_038416505 (Get FASTA)   NCBI Sequence Viewer  
  XP_038461910 (Get FASTA)   NCBI Sequence Viewer  
  XP_038461911 (Get FASTA)   NCBI Sequence Viewer  
  XP_038461912 (Get FASTA)   NCBI Sequence Viewer  
  XP_038461913 (Get FASTA)   NCBI Sequence Viewer  
  XP_038461914 (Get FASTA)   NCBI Sequence Viewer  
  XP_038461915 (Get FASTA)   NCBI Sequence Viewer  
  XP_038461916 (Get FASTA)   NCBI Sequence Viewer  
  XP_038526620 (Get FASTA)   NCBI Sequence Viewer  
  XP_038526621 (Get FASTA)   NCBI Sequence Viewer  
  XP_038526622 (Get FASTA)   NCBI Sequence Viewer  
  XP_038526623 (Get FASTA)   NCBI Sequence Viewer  
  XP_038526624 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCAFP00000015414.5
  ENSCAFP00000047456.1
  ENSCAFP00000069848.1
  ENSCAFP00000073753.1
  ENSCAFP00030003984.1
  ENSCAFP00030004063.1
  ENSCAFP00030004121.1
  ENSCAFP00030004172.1
  ENSCAFP00030004235.1
  ENSCAFP00030004305.1
  ENSCAFP00040005020.1
  ENSCAFP00040005078.1
  ENSCAFP00845020983.1
  ENSCAFP00845021071
  ENSCAFP00845021071.1
  ENSCAFP00845021098
  ENSCAFP00845021098.1
  ENSCAFP00845021124.1
RefSeq Acc Id: ENSCAFP00000047456   ⟸   ENSCAFT00000084252
RefSeq Acc Id: ENSCAFP00000015414   ⟸   ENSCAFT00000016655
RefSeq Acc Id: XP_038336457   ⟸   XM_038480529
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038336456   ⟸   XM_038480528
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038336455   ⟸   XM_038480527
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038336454   ⟸   XM_038480526
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038336458   ⟸   XM_038480530
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038461915   ⟸   XM_038605987
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038461914   ⟸   XM_038605986
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038461913   ⟸   XM_038605985
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038461912   ⟸   XM_038605984
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038461910   ⟸   XM_038605982
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038461911   ⟸   XM_038605983
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038461916   ⟸   XM_038605988
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038526623   ⟸   XM_038670695
- Peptide Label: isoform X3
- UniProtKB: A0A8C0RWJ8 (UniProtKB/TrEMBL),   A0A8I3RYK7 (UniProtKB/TrEMBL),   A0A8C0KUM8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038526622   ⟸   XM_038670694
- Peptide Label: isoform X2
- UniProtKB: A0A8C0LZE0 (UniProtKB/TrEMBL),   A0A8C0RWU7 (UniProtKB/TrEMBL),   A0A8I3NVF3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038526621   ⟸   XM_038670693
- Peptide Label: isoform X2
- UniProtKB: A0A8C0LZE0 (UniProtKB/TrEMBL),   A0A8C0RWU7 (UniProtKB/TrEMBL),   A0A8I3NVF3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038526620   ⟸   XM_038670692
- Peptide Label: isoform X1
- UniProtKB: A0A8C0RWU7 (UniProtKB/TrEMBL),   A0A8I3NVF3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038526624   ⟸   XM_038670696
- Peptide Label: isoform X4
- UniProtKB: A0A8I3NQS8 (UniProtKB/TrEMBL),   A0A8P0TMB0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038416504   ⟸   XM_038560576
- Peptide Label: isoform X3
- UniProtKB: A0A8C0RWJ8 (UniProtKB/TrEMBL),   A0A8I3RYK7 (UniProtKB/TrEMBL),   A0A8C0KUM8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038416503   ⟸   XM_038560575
- Peptide Label: isoform X2
- UniProtKB: A0A8C0LZE0 (UniProtKB/TrEMBL),   A0A8C0RWU7 (UniProtKB/TrEMBL),   A0A8I3NVF3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038416502   ⟸   XM_038560574
- Peptide Label: isoform X2
- UniProtKB: A0A8C0LZE0 (UniProtKB/TrEMBL),   A0A8C0RWU7 (UniProtKB/TrEMBL),   A0A8I3NVF3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038416501   ⟸   XM_038560573
- Peptide Label: isoform X1
- UniProtKB: A0A8C0RWU7 (UniProtKB/TrEMBL),   A0A8I3NVF3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038416505   ⟸   XM_038560577
- Peptide Label: isoform X4
- UniProtKB: A0A8I3NQS8 (UniProtKB/TrEMBL),   A0A8P0TMB0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038397784   ⟸   XM_038541856
- Peptide Label: isoform X3
- UniProtKB: A0A8C0KUM8 (UniProtKB/TrEMBL),   A0A8C0RWJ8 (UniProtKB/TrEMBL),   A0A8I3RYK7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038397783   ⟸   XM_038541855
- Peptide Label: isoform X2
- UniProtKB: A0A8C0LZE0 (UniProtKB/TrEMBL),   A0A8C0RWU7 (UniProtKB/TrEMBL),   A0A8I3NVF3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038397782   ⟸   XM_038541854
- Peptide Label: isoform X2
- UniProtKB: A0A8C0LZE0 (UniProtKB/TrEMBL),   A0A8C0RWU7 (UniProtKB/TrEMBL),   A0A8I3NVF3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038397781   ⟸   XM_038541853
- Peptide Label: isoform X1
- UniProtKB: A0A8C0RWU7 (UniProtKB/TrEMBL),   A0A8I3NVF3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038397785   ⟸   XM_038541857
- Peptide Label: isoform X4
- UniProtKB: A0A8I3NQS8 (UniProtKB/TrEMBL),   A0A8P0TMB0 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845020983   ⟸   ENSCAFT00845026628
RefSeq Acc Id: ENSCAFP00845021098   ⟸   ENSCAFT00845026790
RefSeq Acc Id: ENSCAFP00845021124   ⟸   ENSCAFT00845026824
RefSeq Acc Id: ENSCAFP00845021071   ⟸   ENSCAFT00845026747
Protein Domains
ARID   JmjC   JmjN   PHD-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000010452 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030002108 UniProtKB/TrEMBL
  ENSCAFG00040002775 UniProtKB/TrEMBL
  ENSCAFG00845014886 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000016655.5 UniProtKB/TrEMBL
  ENSCAFT00000084252.2 UniProtKB/TrEMBL
  ENSCAFT00000099870.1 UniProtKB/TrEMBL
  ENSCAFT00000104554.1 UniProtKB/TrEMBL
  ENSCAFT00030004493.1 UniProtKB/TrEMBL
  ENSCAFT00030004584.1 UniProtKB/TrEMBL
  ENSCAFT00030004642.1 UniProtKB/TrEMBL
  ENSCAFT00030004695.1 UniProtKB/TrEMBL
  ENSCAFT00030004762.1 UniProtKB/TrEMBL
  ENSCAFT00030004848.1 UniProtKB/TrEMBL
  ENSCAFT00040005821.1 UniProtKB/TrEMBL
  ENSCAFT00040005886.1 UniProtKB/TrEMBL
  ENSCAFT00845026628.1 UniProtKB/TrEMBL
  ENSCAFT00845026747 ENTREZGENE
  ENSCAFT00845026747.1 UniProtKB/TrEMBL
  ENSCAFT00845026790 ENTREZGENE
  ENSCAFT00845026790.1 UniProtKB/TrEMBL
  ENSCAFT00845026824.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.150.60 UniProtKB/TrEMBL
  3.30.40.10 UniProtKB/TrEMBL
  Cupin UniProtKB/TrEMBL
InterPro ARID_dom UniProtKB/TrEMBL
  ARID_dom_sf UniProtKB/TrEMBL
  JmjC_dom UniProtKB/TrEMBL
  JmjN UniProtKB/TrEMBL
  KDM5_C-hel UniProtKB/TrEMBL
  KDM5B_ARID UniProtKB/TrEMBL
  KDM5B_PHD1 UniProtKB/TrEMBL
  KDM5B_PHD3 UniProtKB/TrEMBL
  Lys_sp_deMease-like_dom UniProtKB/TrEMBL
  Zinc_finger_PHD-type_CS UniProtKB/TrEMBL
  Znf_C5HC2 UniProtKB/TrEMBL
  Znf_FYVE_PHD UniProtKB/TrEMBL
  Znf_PHD UniProtKB/TrEMBL
  Znf_PHD-finger UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/TrEMBL
NCBI Gene KDM5B ENTREZGENE
PANTHER LYSINE-SPECIFIC DEMETHYLASE UniProtKB/TrEMBL
  LYSINE-SPECIFIC DEMETHYLASE 5B UniProtKB/TrEMBL
Pfam ARID UniProtKB/TrEMBL
  JmjC UniProtKB/TrEMBL
  JmjN UniProtKB/TrEMBL
  KDM5_C-hel UniProtKB/TrEMBL
  PHD UniProtKB/TrEMBL
  PLU-1 UniProtKB/TrEMBL
  zf-C5HC2 UniProtKB/TrEMBL
PROSITE ARID UniProtKB/TrEMBL
  JMJC UniProtKB/TrEMBL
  JMJN UniProtKB/TrEMBL
  ZF_PHD_1 UniProtKB/TrEMBL
  ZF_PHD_2 UniProtKB/TrEMBL
SMART ARID UniProtKB/TrEMBL
  BRIGHT UniProtKB/TrEMBL
  JmjC UniProtKB/TrEMBL
  JmjN UniProtKB/TrEMBL
  PHD UniProtKB/TrEMBL
Superfamily-SCOP Clavaminate synthase-like UniProtKB/TrEMBL
  SSF46774 UniProtKB/TrEMBL
  SSF57903 UniProtKB/TrEMBL
UniProt A0A8C0KUM8 ENTREZGENE
  A0A8C0LZE0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0M305_CANLF UniProtKB/TrEMBL
  A0A8C0M3M0_CANLF UniProtKB/TrEMBL
  A0A8C0M6H9_CANLF UniProtKB/TrEMBL
  A0A8C0RWJ8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0RWU7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3NQS8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3NVF3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3NYP5_CANLF UniProtKB/TrEMBL
  A0A8I3RYK7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0NXK8_CANLF UniProtKB/TrEMBL
  A0A8P0TMB0 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:42328 ENTREZGENE