GASK1B (golgi associated kinase 1B) - Rat Genome Database

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Gene: GASK1B (golgi associated kinase 1B) Canis lupus familiaris
Analyze
Symbol: GASK1B
Name: golgi associated kinase 1B
RGD ID: 12259769
Description: ASSOCIATED WITH COVID-19 (ortholog); Experimental Liver Cirrhosis (ortholog); genetic disease (ortholog); FOUND IN Golgi apparatus (inferred); membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: FAM198B; family with sequence similarity 198 member B; Golgi-associated kinase 1B; protein FAM198B
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11555,338,536 - 55,384,521 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1555,340,058 - 55,385,857 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1555,700,454 - 55,746,527 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01556,081,806 - 56,127,861 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1556,083,333 - 56,129,557 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11555,321,092 - 55,367,138 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01555,420,300 - 55,466,545 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01555,732,909 - 55,778,982 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
GASK1B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11555,338,536 - 55,384,521 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1555,340,058 - 55,385,857 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1555,700,454 - 55,746,527 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01556,081,806 - 56,127,861 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1556,083,333 - 56,129,557 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11555,321,092 - 55,367,138 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01555,420,300 - 55,466,545 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01555,732,909 - 55,778,982 (-)NCBIUU_Cfam_GSD_1.0
GASK1B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh384158,124,474 - 158,173,025 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl4158,124,474 - 158,173,318 (-)EnsemblGRCh38hg38GRCh38
GRCh374159,045,626 - 159,094,177 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 364159,265,211 - 159,313,652 (-)NCBINCBI36Build 36hg18NCBI36
Celera4156,388,183 - 156,436,659 (-)NCBICelera
Cytogenetic Map4q32.1NCBI
HuRef4154,797,096 - 154,845,572 (-)NCBIHuRef
CHM1_14159,022,919 - 159,071,420 (-)NCBICHM1_1
T2T-CHM13v2.04161,476,702 - 161,525,241 (-)NCBIT2T-CHM13v2.0
Gask1b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39379,791,795 - 79,853,585 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl379,791,840 - 79,853,587 (+)EnsemblGRCm39 Ensembl
GRCm38379,884,484 - 79,946,278 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl379,884,533 - 79,946,280 (+)EnsemblGRCm38mm10GRCm38
MGSCv37379,689,852 - 79,750,200 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36379,971,915 - 80,029,312 (+)NCBIMGSCv36mm8
Celera379,913,831 - 79,976,828 (+)NCBICelera
Cytogenetic Map3E3NCBI
cM Map335.13NCBI
Gask1b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82167,345,738 - 167,410,606 (+)NCBIGRCr8
mRatBN7.22165,047,689 - 165,112,479 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2165,047,684 - 165,112,477 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2172,264,116 - 172,321,131 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02170,280,250 - 170,336,795 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02164,889,147 - 164,945,695 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02178,678,946 - 178,751,459 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2178,679,041 - 178,750,668 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02198,087,533 - 198,160,178 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42171,368,285 - 171,432,819 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12171,318,390 - 171,382,924 (+)NCBI
Celera2159,137,934 - 159,195,169 (+)NCBICelera
Cytogenetic Map2q33NCBI
Gask1b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554719,284,986 - 9,327,337 (+)NCBIChiLan1.0ChiLan1.0
GASK1B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v23155,990,288 - 156,048,438 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan14156,345,551 - 156,403,695 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v04150,443,110 - 150,492,282 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.14162,256,117 - 162,304,198 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl4162,246,728 - 162,304,069 (-)Ensemblpanpan1.1panPan2
Gask1b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530134,852,768 - 34,909,815 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365764,635,719 - 4,694,200 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365764,635,762 - 4,694,152 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GASK1B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl847,036,899 - 47,098,718 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1847,036,905 - 47,133,914 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2849,264,506 - 49,361,184 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GASK1B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.17104,700,841 - 104,749,213 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl7104,699,986 - 104,747,769 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603784,402,934 - 84,457,019 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gask1b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624848420,751 - 463,903 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in GASK1B
617 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 3 5 16 4 6 3 12 6 6
Low 2 6 6 2 6 3 8 4
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSCAFT00000045012   ⟹   ENSCAFP00000037402
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1555,340,058 - 55,385,857 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000087513   ⟹   ENSCAFP00000045986
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1555,340,058 - 55,383,278 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845019911   ⟹   ENSCAFP00845015596
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1556,083,333 - 56,129,557 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845019948   ⟹   ENSCAFP00845015625
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1556,083,333 - 56,129,557 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845019984   ⟹   ENSCAFP00845015655
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1556,083,333 - 56,118,993 (-)Ensembl
RefSeq Acc Id: XM_003431991   ⟹   XP_003432039
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11555,338,536 - 55,384,521 (-)NCBI
Dog10K_Boxer_Tasha1555,700,454 - 55,746,527 (-)NCBI
Sequence:
RefSeq Acc Id: XM_038496707   ⟹   XP_038352635
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11555,321,092 - 55,367,138 (-)NCBI
RefSeq Acc Id: XM_038559097   ⟹   XP_038415025
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01555,732,909 - 55,778,982 (-)NCBI
RefSeq Acc Id: XM_038623040   ⟹   XP_038478968
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01555,420,300 - 55,466,545 (-)NCBI
RefSeq Acc Id: XM_038688711   ⟹   XP_038544639
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01556,081,806 - 56,127,861 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_003432039   ⟸   XM_003431991
- UniProtKB: A0A8C0MDK9 (UniProtKB/TrEMBL),   A0A8I3NTY0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000037402   ⟸   ENSCAFT00000045012
RefSeq Acc Id: ENSCAFP00000045986   ⟸   ENSCAFT00000087513
RefSeq Acc Id: XP_038352635   ⟸   XM_038496707
RefSeq Acc Id: XP_038478968   ⟸   XM_038623040
RefSeq Acc Id: XP_038544639   ⟸   XM_038688711
- UniProtKB: A0A8C0MDK9 (UniProtKB/TrEMBL),   A0A8I3NTY0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038415025   ⟸   XM_038559097
- UniProtKB: A0A8C0MDK9 (UniProtKB/TrEMBL),   A0A8I3NTY0 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845015596   ⟸   ENSCAFT00845019911
RefSeq Acc Id: ENSCAFP00845015655   ⟸   ENSCAFT00845019984
RefSeq Acc Id: ENSCAFP00845015625   ⟸   ENSCAFT00845019948


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000032756 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030006344 UniProtKB/TrEMBL
  ENSCAFG00040014784 UniProtKB/TrEMBL
  ENSCAFG00845011234 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000045012.3 UniProtKB/TrEMBL
  ENSCAFT00000087513.2 UniProtKB/TrEMBL
  ENSCAFT00000109334.1 UniProtKB/TrEMBL
  ENSCAFT00030011628.1 UniProtKB/TrEMBL
  ENSCAFT00030011666.1 UniProtKB/TrEMBL
  ENSCAFT00040027228.1 UniProtKB/TrEMBL
  ENSCAFT00845019911 ENTREZGENE
  ENSCAFT00845019911.1 UniProtKB/TrEMBL
  ENSCAFT00845019948.1 UniProtKB/TrEMBL
  ENSCAFT00845019984.1 UniProtKB/TrEMBL
InterPro FAM198 UniProtKB/TrEMBL
NCBI Gene FAM198B ENTREZGENE
PANTHER GOLGI-ASSOCIATED KINASE 1B UniProtKB/TrEMBL
  PTHR15905 UniProtKB/TrEMBL
Pfam FAM198 UniProtKB/TrEMBL
UniProt A0A8C0MDK9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0MLK9_CANLF UniProtKB/TrEMBL
  A0A8C0SQ43_CANLF UniProtKB/TrEMBL
  A0A8I3N7E8_CANLF UniProtKB/TrEMBL
  A0A8I3NK81_CANLF UniProtKB/TrEMBL
  A0A8I3NTY0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0SS96_CANLF UniProtKB/TrEMBL
VGNC ID VGNC:40646 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-10-30 GASK1B  golgi associated kinase 1B  FAM198B  family with sequence similarity 198 member B  Symbol and/or name change 5135510 APPROVED