SEC14L1 (SEC14 like lipid binding 1)

Gene: SEC14L1 (SEC14 like lipid binding 1) Canis lupus familiaris

Analyze

Symbol:

SEC14L1

Name:

SEC14 like lipid binding 1

RGD ID:

12258813

Description:

ENCODES a protein that exhibits protein sequestering activity (inferred); RIG-I binding (inferred); INVOLVED IN choline transport (inferred); negative regulation of RIG-I signaling pathway (inferred); ASSOCIATED WITH genetic disease (ortholog); Monoclonal B-Cell Lymphocytosis (ortholog); FOUND IN cytoplasm (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

SEC14-like 1; SEC14-like protein 1

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

CanFam3.1 - Dog CanFam3.1 Assembly

Position:

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	9	3,683,328 - 3,740,271 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	9	3,659,451 - 3,739,213 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	9	4,365,609 - 4,422,239 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	9	4,360,709 - 4,417,642 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	9	4,360,714 - 4,417,622 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	9	4,384,488 - 4,441,395 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	9	4,505,242 - 4,562,080 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	9	4,587,564 - 4,644,483 (-)	NCBI		UU_Cfam_GSD_1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

Monoclonal B-Cell Lymphocytosis (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

choline transport (IEA)

negative regulation of RIG-I signaling pathway (IEA)

Cellular Component

cytoplasm (IEA,ISO)

cytosol (IEA)

Golgi apparatus (IEA)

nucleoplasm (IEA)

Molecular Function

protein binding (ISO)

protein sequestering activity (IEA)

RIG-I binding (IEA)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

SEC14L1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	9	3,683,328 - 3,740,271 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	9	3,659,451 - 3,739,213 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	9	4,365,609 - 4,422,239 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	9	4,360,709 - 4,417,642 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	9	4,360,714 - 4,417,622 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	9	4,384,488 - 4,441,395 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	9	4,505,242 - 4,562,080 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	9	4,587,564 - 4,644,483 (-)	NCBI		UU_Cfam_GSD_1.0

SEC14L1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	17	77,088,685 - 77,217,101 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	17	77,088,749 - 77,217,101 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	17	75,084,767 - 75,213,183 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	17	72,648,647 - 72,724,778 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	17	72,648,616 - 72,724,774	NCBI
Celera	17	71,732,575 - 71,808,664 (+)	NCBI		Celera
Cytogenetic Map	17	q25.2-q25.3	NCBI
HuRef	17	70,511,931 - 70,641,030 (+)	NCBI		HuRef
CHM1_1	17	75,149,639 - 75,278,075 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	17	77,981,537 - 78,110,663 (+)	NCBI		T2T-CHM13v2.0

Sec14l1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	117,005,994 - 117,050,094 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	117,005,994 - 117,050,094 (+)	Ensembl		GRCm39 Ensembl
GRCm38	11	117,115,168 - 117,159,268 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	117,115,168 - 117,159,268 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	116,976,486 - 117,020,582 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	11	116,931,339 - 116,975,311 (+)	NCBI		MGSCv36	mm8
Celera	11	128,859,607 - 128,903,470 (+)	NCBI		Celera
Cytogenetic Map	11	E2	NCBI
cM Map	11	81.99	NCBI

Sec14l1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	102,818,693 - 102,865,841 (+)	NCBI		GRCr8
mRatBN7.2	10	102,319,920 - 102,367,070 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	102,319,920 - 102,367,068 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	10	107,422,983 - 107,470,216 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	106,886,082 - 106,933,320 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	102,240,737 - 102,287,882 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	106,065,712 - 106,112,859 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	106,065,712 - 106,112,857 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	105,718,075 - 105,765,282 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	107,220,734 - 107,267,940 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	10	100,886,819 - 100,933,978 (+)	NCBI		Celera
Cytogenetic Map	10	q32.2	NCBI

Sec14l1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955506	5,158,805 - 5,232,551 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955506	5,159,090 - 5,231,827 (-)	NCBI	ChiLan1.0	ChiLan1.0

SEC14L1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	19	93,194,000 - 93,269,776 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	17	98,023,131 - 98,098,962 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	17	71,221,870 - 71,297,142 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	17	76,730,168 - 76,857,856 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	17	76,785,559 - 76,857,848 (+)	Ensembl	panpan1.1		panPan2

Sec14l1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	4,303,778 - 4,363,669 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936594	2,048,054 - 2,100,859 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936594	2,048,146 - 2,100,808 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SEC14L1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	12	4,441,114 - 4,489,081 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	12	4,439,045 - 4,489,078 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	12	4,186,754 - 4,236,079 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SEC14L1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	16	44,490,927 - 44,565,922 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	16	44,489,852 - 44,565,853 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666077	15,216,709 - 15,293,938 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Sec14l1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624801	6,890,134 - 6,945,443 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624801	6,890,278 - 6,942,724 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in SEC14L1
451 total Variants

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	reproductive system	respiratory system	adipose tissue
High
Medium	5	5	22	6	6	6	6	6	12	8	10	6
Low
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_022422693	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_022422694	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038484831	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038484832	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038546501	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038546502	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038610500	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038610501	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038675620	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038675621	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_540457	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AAEX04000009	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAHUQ010000090	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAQRD010000103	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAUVH010000313	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	REHQ01000009	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCAFT00000030383 ⟹ ENSCAFP00000028230

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	9	3,683,334 - 3,739,213 (-)	Ensembl

RefSeq Acc Id:

ENSCAFT00000080687 ⟹ ENSCAFP00000045750

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	9	3,684,811 - 3,739,213 (-)	Ensembl

RefSeq Acc Id:

ENSCAFT00000087955 ⟹ ENSCAFP00000052570

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	9	3,683,334 - 3,715,714 (-)	Ensembl

RefSeq Acc Id:

ENSCAFT00000092314 ⟹ ENSCAFP00000046653

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	9	3,659,451 - 3,739,213 (-)	Ensembl

RefSeq Acc Id:

ENSCAFT00845028078 ⟹ ENSCAFP00845022091

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	9	4,360,714 - 4,417,622 (-)	Ensembl

RefSeq Acc Id:

XM_022422693 ⟹ XP_022278401

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	9	3,683,328 - 3,740,271 (-)	NCBI
Dog10K_Boxer_Tasha	9	4,365,609 - 4,422,239 (-)	NCBI

Sequence:

show sequence

TCCCCGGAACCGGCGGCGGACCTGCGGCCGGCGGCAGTGGAACGGCGGCGGCCCCACGGAGCCG
CCGGCATGAGCGCCCCGCGCCGCCCCGCGGCCCGGGCCCGGCCTTTCTGACAAGAGCTAGCCTT
TGGGCTCCTTGAGGATATTCCATTTTGTGCTTTTGAATATCCTCTGACCATATTCAGCATGAAG
TAACATTTTTAATGATTATTCTCAGCAGGACAGGTGTGAGAGGATTGCTATTGTGTTACAATCA
TGGTGCAGAAATACCAGTCACCGGTGAGGGTGTATAAACACCCCTTTGAATTAATTATGGCTGC
CTATGAAAGGAGGTTTCCTACATGTCCTTTGATTCCAATGTTTGTGGACAGTGACACTGTGAAT
GAGTTCAAGAGTGAAGATGGGGCTATTCACGTTATAGAAAGGCGCTGTAAGCTGGACATAGATG
CACCACGGCTGCTGAAAAAGATTGCAGGAGTTGATTATGTTTATTTTGTCCAGAAGAACTCATT
GAATTCTCGGGAACGTACCTTGCACATTGAGGCCCATAATGAGACCTTTTCTAATCGCGTCATC
ATCAATGAGCACTGCTGCTACACTGTTCACCCTGAAAATGAAGATTGGACCTGTTTTGAACAGT
CTGCAAGTTTAGATATTAAATCTTTCTTTGGTTTTGAAAGTACAGTTGAAAAAATTGCAATGAA
ACAATATACCAGCAACATTAAAAAAGGAAAAGAAATAATTGAATACTACCTTCGTCAGTTGGAA
GAAGAAGGCATAACATTCGTGCCCCGCTGGACTCCACCTTCCATTGCTCCCTCCTCAGAGACCT
CCTCATCATGCAAGAAACAAGCCGCGTCCTTGGCTGTTGTGGTTCCAGACACTGCCCAGGCAGA
GGGGCTGGCCAGTGAGGCCCTTGGCACCCCCACCGGGCCGCCCGAGCCTGTGGCAGGGACCCCT
GATGACAAACTAGATGCGGACTACATCAAGAGGTACCTGGGCGACTTGACCCCACTACAGGAGA
GCTGCTTGATCCGGCTTCGCCAGTGGCTCCAGGAAACCCACAAGGGCAAAATCCCGAAAGATGA
GCATATTCTTCGGTTTTTACGTGCCCGCGACTTCAATATAGACAAAGCCAGAGAGATCATGTGT
CAGTCCTTGACTTGGCGAAAGCAACACCAGGTGGACTACATTCTTGACACCTGGAGCCCTCCCC
AGGTCCTCCAGGACTACTATGCAGGAGGCTGGCACCATCATGATAAAGACGGGCGGCCACTGTA
CGTGCTCAGGCTGGGGCAGATGGATACCAAGGGCTTGGTGAGAGCCCTCGGGGAGGAGGCTCTG
CTGCGTTATGTTCTCTCCATAAACGAAGAAGGGCTGAGACGATGTGAAGAAAATACAAAAGTCT
TCGGTCGACCTATCAGTTCATGGACCTGCCTGGTGGACCTGGAGGGGCTGAACATGCGCCACCT
GTGGAGACCTGGCGTGAAGGCCCTGCTGCGCATCATAGAGGTGGTGGAGGCCAACTACCCAGAG
ACACTCGGCCGCCTCCTTATTCTTCGTGCTCCCCGGGTGTTCCCTGTGCTCTGGACGCTGGTTA
GTCCATTCATTGATGACAACACCAGAAGGAAATTCCTGATTTATGCAGGAAATGACTACCAGGG
CCCTGGAGGCCTGCTGGACTACATTGATAAAGAGATCATTCCAGATTTCCTGAGTGGGGAGTGC
ATGTGTGAAGTGCCCGAGGGCGGGCTGGTGCCCAAGTCTCTGTACAGGACTGCGGAGGAGCTGG
AGAACGAAGACCTCAGGCTCTGGACCGAGACCATCTACCAGTCGGCCAGCGTCTTCAAAGGAGC
CCCGCACGAGATCCTCATTCAGATTGTGGATGCCTCTTCAGTGATCACTTGGGATTTTGACGTG
TGCAAAGGGGACATCGTCTTCAACATCTACCACTCCAAGAGGTCGCCCCAGCCTCCCAAAAAGG
ACTCATTGGGGGCGCACAGCATTACTTCCCCGGGAGGGAACAACGTGCAGCTTATAGACAGAGT
ATGGCAGCTGGGCCGTGACTATAGCATGGTGGAGTCACCTCTGATCTGCAAAGAAGGAGAAAGC
GTGCAGGGCTCACACGTGACGAGATGGCCGGGCTTCTACATCCTGCAGTGGAGATTCCACAGCA
TGCCAGCGTGCGCCGCCACCAACCTGCCCCGGGTGGACGATGTGCTGGCCTCCCTGCAAGTGTC
GTCTCACAAGTGCAAAGTGATGTACTACACCGAAGTGATCGGCTCCGAGGATTTCCGAGGCTCT
ATGACCAGCCTGGAGTCCAGCCACAGCGGGTTCTCCCAGCTGAGCGCCGCCACCACCTCCTCCA
GCCAGTCTCAGGCCAGCTCTATGATCTCCAGATGGCGATTTTGCTGACAGCTGCCAAGAAAACG
CTTCCCTCCACAGTCCACCTCAGCCCAGGGTGTTTGTAGAACTCTTTGAGTTGCAGCCACTCCC
CCCTCCCCCAGTCTGAAGACGTGTTCGTTTTAAGTTGCCTCAGAAGTGGCACTGTCTTGTTCCC
AGAGAGTCGAACGCGTCTCTAAGAGTTCAAAGCACATCACTGCGCAGACGCCTGCAGGGTTCCT
CCTGAGTGACACGGCGCCTGGTTCTCTGGTTCTCCTTGAGGGGCCGCGGGCACACGGACCTGGA
CTCTGCCCCTACTGTCCATGCCCTGACTTCTCACACTCCGCCTTTCTTCTGCACTAAGGGTTCT
TTTGGTCTCCCCTCTATTACTAGTGTCTTAACTCACTTTTCTTCCTAAATTCATTATTTGCATA
TCAAATTCTGTAAATGTTTTGTAAACATATTACCTCACTCTTGGTAATACAATACTGATAGTCT
TTAAAAGATTTTTTTACTGTTACCAATAATAAATGTGAACTGTTTAAAAAA

hide sequence

RefSeq Acc Id:

XM_022422694 ⟹ XP_022278402

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	9	3,683,328 - 3,740,257 (-)	NCBI
Dog10K_Boxer_Tasha	9	4,365,609 - 4,422,208 (-)	NCBI

Sequence:

show sequence

GGCGGACCTGCGGCCGGCGGCAGTGGAACGGCGGCGGCCCCACGGAGCCGCCGGCATGAGCGCC
CCGCGCCGCCCCGCGGCCCGGGCCCGGCCTTTCTGACAAGAGGTGTGAGAGGATTGCTATTGTG
TTACAATCATGGTGCAGAAATACCAGTCACCGGTGAGGGTGTATAAACACCCCTTTGAATTAAT
TATGGCTGCCTATGAAAGGAGGTTTCCTACATGTCCTTTGATTCCAATGTTTGTGGACAGTGAC
ACTGTGAATGAGTTCAAGAGTGAAGATGGGGCTATTCACGTTATAGAAAGGCGCTGTAAGCTGG
ACATAGATGCACCACGGCTGCTGAAAAAGATTGCAGGAGTTGATTATGTTTATTTTGTCCAGAA
GAACTCATTGAATTCTCGGGAACGTACCTTGCACATTGAGGCCCATAATGAGACCTTTTCTAAT
CGCGTCATCATCAATGAGCACTGCTGCTACACTGTTCACCCTGAAAATGAAGATTGGACCTGTT
TTGAACAGTCTGCAAGTTTAGATATTAAATCTTTCTTTGGTTTTGAAAGTACAGTTGAAAAAAT
TGCAATGAAACAATATACCAGCAACATTAAAAAAGGAAAAGAAATAATTGAATACTACCTTCGT
CAGTTGGAAGAAGAAGGCATAACATTCGTGCCCCGCTGGACTCCACCTTCCATTGCTCCCTCCT
CAGAGACCTCCTCATCATGCAAGAAACAAGCCGCGTCCTTGGCTGTTGTGGTTCCAGACACTGC
CCAGGCAGAGGGGCTGGCCAGTGAGGCCCTTGGCACCCCCACCGGGCCGCCCGAGCCTGTGGCA
GGGACCCCTGATGACAAACTAGATGCGGACTACATCAAGAGGTACCTGGGCGACTTGACCCCAC
TACAGGAGAGCTGCTTGATCCGGCTTCGCCAGTGGCTCCAGGAAACCCACAAGGGCAAAATCCC
GAAAGATGAGCATATTCTTCGGTTTTTACGTGCCCGCGACTTCAATATAGACAAAGCCAGAGAG
ATCATGTGTCAGTCCTTGACTTGGCGAAAGCAACACCAGGTGGACTACATTCTTGACACCTGGA
GCCCTCCCCAGGTCCTCCAGGACTACTATGCAGGAGGCTGGCACCATCATGATAAAGACGGGCG
GCCACTGTACGTGCTCAGGCTGGGGCAGATGGATACCAAGGGCTTGGTGAGAGCCCTCGGGGAG
GAGGCTCTGCTGCGTTATGTTCTCTCCATAAACGAAGAAGGGCTGAGACGATGTGAAGAAAATA
CAAAAGTCTTCGGTCGACCTATCAGTTCATGGACCTGCCTGGTGGACCTGGAGGGGCTGAACAT
GCGCCACCTGTGGAGACCTGGCGTGAAGGCCCTGCTGCGCATCATAGAGGTGGTGGAGGCCAAC
TACCCAGAGACACTCGGCCGCCTCCTTATTCTTCGTGCTCCCCGGGTGTTCCCTGTGCTCTGGA
CGCTGGTTAGTCCATTCATTGATGACAACACCAGAAGGAAATTCCTGATTTATGCAGGAAATGA
CTACCAGGGCCCTGGAGGCCTGCTGGACTACATTGATAAAGAGATCATTCCAGATTTCCTGAGT
GGGGAGTGCATGTGTGAAGTGCCCGAGGGCGGGCTGGTGCCCAAGTCTCTGTACAGGACTGCGG
AGGAGCTGGAGAACGAAGACCTCAGGCTCTGGACCGAGACCATCTACCAGTCGGCCAGCGTCTT
CAAAGGAGCCCCGCACGAGATCCTCATTCAGATTGTGGATGCCTCTTCAGTGATCACTTGGGAT
TTTGACGTGTGCAAAGGGGACATCGTCTTCAACATCTACCACTCCAAGAGGTCGCCCCAGCCTC
CCAAAAAGGACTCATTGGGGGCGCACAGCATTACTTCCCCGGGAGGGAACAACGTGCAGCTTAT
AGACAGAGTATGGCAGCTGGGCCGTGACTATAGCATGGTGGAGTCACCTCTGATCTGCAAAGAA
GGAGAAAGCGTGCAGGGCTCACACGTGACGAGATGGCCGGGCTTCTACATCCTGCAGTGGAGAT
TCCACAGCATGCCAGCGTGCGCCGCCACCAACCTGCCCCGGGTGGACGATGTGCTGGCCTCCCT
GCAAGTGTCGTCTCACAAGTGCAAAGTGATGTACTACACCGAAGTGATCGGCTCCGAGGATTTC
CGAGGCTCTATGACCAGCCTGGAGTCCAGCCACAGCGGGTTCTCCCAGCTGAGCGCCGCCACCA
CCTCCTCCAGCCAGTCTCAGGCCAGCTCTATGATCTCCAGATGGCGATTTTGCTGACAGCTGCC
AAGAAAACGCTTCCCTCCACAGTCCACCTCAGCCCAGGGTGTTTGTAGAACTCTTTGAGTTGCA
GCCACTCCCCCCTCCCCCAGTCTGAAGACGTGTTCGTTTTAAGTTGCCTCAGAAGTGGCACTGT
CTTGTTCCCAGAGAGTCGAACGCGTCTCTAAGAGTTCAAAGCACATCACTGCGCAGACGCCTGC
AGGGTTCCTCCTGAGTGACACGGCGCCTGGTTCTCTGGTTCTCCTTGAGGGGCCGCGGGCACAC
GGACCTGGACTCTGCCCCTACTGTCCATGCCCTGACTTCTCACACTCCGCCTTTCTTCTGCACT
AAGGGTTCTTTTGGTCTCCCCTCTATTACTAGTGTCTTAACTCACTTTTCTTCCTAAATTCATT
ATTTGCATATCAAATTCTGTAAATGTTTTGTAAACATATTACCTCACTCTTGGTAATACAATAC
TGATAGTCTTTAAAAGATTTTTTTACTGTTACCAATAATAAATGTGAACTGTTTAAAAAA

hide sequence

RefSeq Acc Id:

XM_038484831 ⟹ XP_038340759

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	9	4,384,488 - 4,441,395 (-)	NCBI

RefSeq Acc Id:

XM_038484832 ⟹ XP_038340760

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	9	4,384,488 - 4,441,364 (-)	NCBI

RefSeq Acc Id:

XM_038546501 ⟹ XP_038402429

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	9	4,587,564 - 4,644,483 (-)	NCBI

RefSeq Acc Id:

XM_038546502 ⟹ XP_038402430

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	9	4,587,564 - 4,644,452 (-)	NCBI

RefSeq Acc Id:

XM_038610500 ⟹ XP_038466428

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	9	4,505,242 - 4,562,080 (-)	NCBI

RefSeq Acc Id:

XM_038610501 ⟹ XP_038466429

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	9	4,505,242 - 4,562,049 (-)	NCBI

RefSeq Acc Id:

XM_038675620 ⟹ XP_038531548

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	9	4,360,709 - 4,417,642 (-)	NCBI

RefSeq Acc Id:

XM_038675621 ⟹ XP_038531549

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	9	4,360,709 - 4,417,611 (-)	NCBI

Protein Sequences


Protein RefSeqs	XP_022278401	(Get FASTA)	NCBI Sequence Viewer
	XP_022278402	(Get FASTA)	NCBI Sequence Viewer
	XP_038340759	(Get FASTA)	NCBI Sequence Viewer
	XP_038340760	(Get FASTA)	NCBI Sequence Viewer
	XP_038402429	(Get FASTA)	NCBI Sequence Viewer
	XP_038402430	(Get FASTA)	NCBI Sequence Viewer
	XP_038466428	(Get FASTA)	NCBI Sequence Viewer
	XP_038466429	(Get FASTA)	NCBI Sequence Viewer
	XP_038531548	(Get FASTA)	NCBI Sequence Viewer
	XP_038531549	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCAFP00000045750.1
	ENSCAFP00000052570.1
	ENSCAFP00030003298.1
	ENSCAFP00030003326.1
	ENSCAFP00030003350.1
	ENSCAFP00030003369.1
	ENSCAFP00030003399.1
	ENSCAFP00030003433.1
	ENSCAFP00040007730.1
	ENSCAFP00040007810.1
	ENSCAFP00040007885.1
	ENSCAFP00040007947.1
	ENSCAFP00040008022.1
	ENSCAFP00040008077.1
	ENSCAFP00040008110.1
	ENSCAFP00845022091
	ENSCAFP00845022091.1

RefSeq Acc Id:

XP_022278401 ⟸ XM_022422693

- UniProtKB:

A0A8C0M130 (UniProtKB/TrEMBL), A0A8C0K1K0 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MVQKYQSPVRVYKHPFELIMAAYERRFPTCPLIPMFVDSDTVNEFKSEDGAIHVIERRCKLDID
APRLLKKIAGVDYVYFVQKNSLNSRERTLHIEAHNETFSNRVIINEHCCYTVHPENEDWTCFEQ
SASLDIKSFFGFESTVEKIAMKQYTSNIKKGKEIIEYYLRQLEEEGITFVPRWTPPSIAPSSET
SSSCKKQAASLAVVVPDTAQAEGLASEALGTPTGPPEPVAGTPDDKLDADYIKRYLGDLTPLQE
SCLIRLRQWLQETHKGKIPKDEHILRFLRARDFNIDKAREIMCQSLTWRKQHQVDYILDTWSPP
QVLQDYYAGGWHHHDKDGRPLYVLRLGQMDTKGLVRALGEEALLRYVLSINEEGLRRCEENTKV
FGRPISSWTCLVDLEGLNMRHLWRPGVKALLRIIEVVEANYPETLGRLLILRAPRVFPVLWTLV
SPFIDDNTRRKFLIYAGNDYQGPGGLLDYIDKEIIPDFLSGECMCEVPEGGLVPKSLYRTAEEL
ENEDLRLWTETIYQSASVFKGAPHEILIQIVDASSVITWDFDVCKGDIVFNIYHSKRSPQPPKK
DSLGAHSITSPGGNNVQLIDRVWQLGRDYSMVESPLICKEGESVQGSHVTRWPGFYILQWRFHS
MPACAATNLPRVDDVLASLQVSSHKCKVMYYTEVIGSEDFRGSMTSLESSHSGFSQLSAATTSS
SQSQASSMISRWRFC

hide sequence

RefSeq Acc Id:

XP_022278402 ⟸ XM_022422694

- UniProtKB:

A0A8C0M130 (UniProtKB/TrEMBL), A0A8C0K1K0 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MVQKYQSPVRVYKHPFELIMAAYERRFPTCPLIPMFVDSDTVNEFKSEDGAIHVIERRCKLDID
APRLLKKIAGVDYVYFVQKNSLNSRERTLHIEAHNETFSNRVIINEHCCYTVHPENEDWTCFEQ
SASLDIKSFFGFESTVEKIAMKQYTSNIKKGKEIIEYYLRQLEEEGITFVPRWTPPSIAPSSET
SSSCKKQAASLAVVVPDTAQAEGLASEALGTPTGPPEPVAGTPDDKLDADYIKRYLGDLTPLQE
SCLIRLRQWLQETHKGKIPKDEHILRFLRARDFNIDKAREIMCQSLTWRKQHQVDYILDTWSPP
QVLQDYYAGGWHHHDKDGRPLYVLRLGQMDTKGLVRALGEEALLRYVLSINEEGLRRCEENTKV
FGRPISSWTCLVDLEGLNMRHLWRPGVKALLRIIEVVEANYPETLGRLLILRAPRVFPVLWTLV
SPFIDDNTRRKFLIYAGNDYQGPGGLLDYIDKEIIPDFLSGECMCEVPEGGLVPKSLYRTAEEL
ENEDLRLWTETIYQSASVFKGAPHEILIQIVDASSVITWDFDVCKGDIVFNIYHSKRSPQPPKK
DSLGAHSITSPGGNNVQLIDRVWQLGRDYSMVESPLICKEGESVQGSHVTRWPGFYILQWRFHS
MPACAATNLPRVDDVLASLQVSSHKCKVMYYTEVIGSEDFRGSMTSLESSHSGFSQLSAATTSS
SQSQASSMISRWRFC

hide sequence

RefSeq Acc Id:

ENSCAFP00000028230 ⟸ ENSCAFT00000030383

RefSeq Acc Id:

ENSCAFP00000052570 ⟸ ENSCAFT00000087955

RefSeq Acc Id:

ENSCAFP00000046653 ⟸ ENSCAFT00000092314

RefSeq Acc Id:

ENSCAFP00000045750 ⟸ ENSCAFT00000080687

RefSeq Acc Id:

XP_038340759 ⟸ XM_038484831

RefSeq Acc Id:

XP_038340760 ⟸ XM_038484832

RefSeq Acc Id:

XP_038466428 ⟸ XM_038610500

RefSeq Acc Id:

XP_038466429 ⟸ XM_038610501

RefSeq Acc Id:	XP_038531548 ⟸ XM_038675620
- UniProtKB:	A0A8C0M130 (UniProtKB/TrEMBL), A0A8C0K1K0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038531549 ⟸ XM_038675621
- UniProtKB:	A0A8C0M130 (UniProtKB/TrEMBL), A0A8C0K1K0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038402429 ⟸ XM_038546501
- UniProtKB:	A0A8C0K1K0 (UniProtKB/TrEMBL), A0A8C0M130 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038402430 ⟸ XM_038546502
- UniProtKB:	A0A8C0K1K0 (UniProtKB/TrEMBL), A0A8C0M130 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSCAFP00845022091 ⟸ ENSCAFT00845028078

Protein Domains

CRAL-TRIO GOLD PRELI/MSF1

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCAFG00000005176	Ensembl, UniProtKB/TrEMBL
	ENSCAFG00030002027	UniProtKB/TrEMBL
	ENSCAFG00040004723	UniProtKB/TrEMBL
	ENSCAFG00845015759	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCAFT00000080687.2	UniProtKB/TrEMBL
	ENSCAFT00000087955.2	UniProtKB/TrEMBL
	ENSCAFT00030003718.1	UniProtKB/TrEMBL
	ENSCAFT00030003749.1	UniProtKB/TrEMBL
	ENSCAFT00030003775.1	UniProtKB/TrEMBL
	ENSCAFT00030003796.1	UniProtKB/TrEMBL
	ENSCAFT00030003828.1	UniProtKB/TrEMBL
	ENSCAFT00030003867.1	UniProtKB/TrEMBL
	ENSCAFT00040008903.1	UniProtKB/TrEMBL
	ENSCAFT00040009002.1	UniProtKB/TrEMBL
	ENSCAFT00040009080.1	UniProtKB/TrEMBL
	ENSCAFT00040009153.1	UniProtKB/TrEMBL
	ENSCAFT00040009249.1	UniProtKB/TrEMBL
	ENSCAFT00040009322.1	UniProtKB/TrEMBL
	ENSCAFT00040009367.1	UniProtKB/TrEMBL
	ENSCAFT00845028078	ENTREZGENE
	ENSCAFT00845028078.1	UniProtKB/TrEMBL
Gene3D-CATH	3.40.525.10	UniProtKB/TrEMBL
	GOLD domain	UniProtKB/TrEMBL
InterPro	CRAL-TRIO_dom	UniProtKB/TrEMBL
	CRAL-TRIO_dom_sf	UniProtKB/TrEMBL
	CRAL/TRIO_N_dom	UniProtKB/TrEMBL
	CRAL/TRIO_N_dom_sf	UniProtKB/TrEMBL
	GOLD_dom	UniProtKB/TrEMBL
	GOLD_dom_sf	UniProtKB/TrEMBL
	PRELI/MSF1_dom	UniProtKB/TrEMBL
NCBI Gene	SEC14L1	ENTREZGENE
PANTHER	SEC14 RELATED PROTEIN	UniProtKB/TrEMBL
	SEC14-LIKE PROTEIN 1	UniProtKB/TrEMBL
Pfam	CRAL_TRIO	UniProtKB/TrEMBL
	CRAL_TRIO_N	UniProtKB/TrEMBL
	PRELI	UniProtKB/TrEMBL
PROSITE	CRAL_TRIO	UniProtKB/TrEMBL
	GOLD	UniProtKB/TrEMBL
	PRELI_MSF1	UniProtKB/TrEMBL
SMART	CRAL_TRIO_N	UniProtKB/TrEMBL
	SEC14	UniProtKB/TrEMBL
Superfamily-SCOP	SSF101576	UniProtKB/TrEMBL
	SSF46938	UniProtKB/TrEMBL
	SSF52087	UniProtKB/TrEMBL
UniProt	A0A8C0K1K0	ENTREZGENE
	A0A8C0M130	ENTREZGENE, UniProtKB/TrEMBL
	A0A8C0M335_CANLF	UniProtKB/TrEMBL
	A0A8C0M3C9_CANLF	UniProtKB/TrEMBL
	A0A8C0M3G0_CANLF	UniProtKB/TrEMBL
	A0A8C0M8A0_CANLF	UniProtKB/TrEMBL
	A0A8C0Q7B4_CANLF	UniProtKB/TrEMBL
	A0A8C0Q8R6_CANLF	UniProtKB/TrEMBL
	A0A8C0QA48_CANLF	UniProtKB/TrEMBL
	A0A8C0RXX1_CANLF	UniProtKB/TrEMBL
	A0A8C0RY53_CANLF	UniProtKB/TrEMBL
	A0A8I3NYM0_CANLF	UniProtKB/TrEMBL
	A0A8P0P299_CANLF	UniProtKB/TrEMBL
VGNC ID	VGNC:45963	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar