LOC102155200 (ferritin light chain) - Rat Genome Database

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Gene: LOC102155200 (ferritin light chain) Canis lupus familiaris
Analyze
No known orthologs.
Symbol: LOC102155200 (Ensembl: FTL)
Name: ferritin light chain
RGD ID: 12255983
Description: ENCODES a protein that exhibits iron ion binding (ortholog); INVOLVED IN intracellular iron ion homeostasis (inferred); intracellular sequestering of iron ion (inferred); iron ion transport (inferred); FOUND IN intracellular ferritin complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ferritin L subunit; FT
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12316,294,409 - 16,295,335 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
ROS_Cfam_1.02316,590,362 - 16,591,267 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1107,943,145 - 107,944,610 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12316,411,055 - 16,416,032 (+)NCBIUMICH_Zoey_3.1
UU_Cfam_GSD_1.02316,592,856 - 16,593,751 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:16040348   PMID:22301074   PMID:30032202  


Genomics

Variants

.
Variants in LOC102155200
71 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High 5 29 12 11 12 6 5 19 10
Medium 5 10 15 1 6 12 19 16 1 2
Low
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSCAFT00845000775   ⟹   ENSCAFP00845000573
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1107,943,145 - 107,944,610 (-)Ensembl
RefSeq Acc Id: XM_038431624   ⟹   XP_038287552
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02316,590,362 - 16,591,267 (+)NCBI
RefSeq Acc Id: XM_038508105   ⟹   XP_038364033
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12316,411,055 - 16,416,032 (+)NCBI
RefSeq Acc Id: XM_038570180   ⟹   XP_038426108
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02316,592,856 - 16,593,751 (+)NCBI
Protein Sequences
Protein RefSeqs XP_038287552 (Get FASTA)   NCBI Sequence Viewer  
  XP_038364033 (Get FASTA)   NCBI Sequence Viewer  
  XP_038426108 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein BAD96178 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCAFP00040000887.1
Reference Protein Sequences
RefSeq Acc Id: XP_038364033   ⟸   XM_038508105
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038287552   ⟸   XM_038431624
- Peptide Label: isoform X1
- UniProtKB: A0A8C0Q2G3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038426108   ⟸   XM_038570180
- Peptide Label: isoform X1
- UniProtKB: Q53VB8 (UniProtKB/Swiss-Prot),   A0A8C0LRX7 (UniProtKB/TrEMBL),   A0A8C0Q2G3 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845000573   ⟸   ENSCAFT00845000775
Protein Domains
Ferritin-like diiron


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00040000607 UniProtKB/TrEMBL
  ENSCAFG00845000481 Ensembl
Ensembl Transcript ENSCAFT00040001055.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1260.10 UniProtKB/TrEMBL
InterPro Ferritin UniProtKB/TrEMBL
  Ferritin-like UniProtKB/TrEMBL
  Ferritin-like_diiron UniProtKB/TrEMBL
  Ferritin-like_SF UniProtKB/TrEMBL
  Ferritin_CS UniProtKB/TrEMBL
  Ferritin_DPS_dom UniProtKB/TrEMBL
NCBI Gene LOC102155200 ENTREZGENE
PANTHER FERRITIN UniProtKB/TrEMBL
  FERRITIN LIGHT CHAIN UniProtKB/TrEMBL
Pfam Ferritin UniProtKB/TrEMBL
PROSITE FERRITIN_1 UniProtKB/TrEMBL
  FERRITIN_2 UniProtKB/TrEMBL
  FERRITIN_LIKE UniProtKB/TrEMBL
Superfamily-SCOP Ferritin-like UniProtKB/TrEMBL
UniProt A0A8C0LRX7 ENTREZGENE
  A0A8C0Q2G3 ENTREZGENE, UniProtKB/TrEMBL
  Q53VB8 ENTREZGENE