SUSD1 (sushi domain containing 1) - Rat Genome Database

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Gene: SUSD1 (sushi domain containing 1) Canis lupus familiaris
Analyze
Symbol: SUSD1
Name: sushi domain containing 1
RGD ID: 12251762
Description: ENCODES a protein that exhibits calcium ion binding (inferred); ASSOCIATED WITH genetic disease (ortholog); FOUND IN membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: sushi domain-containing protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11166,566,392 - 66,699,262 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1166,491,791 - 66,699,467 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1164,980,687 - 65,107,497 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01167,705,654 - 67,832,827 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1167,656,739 - 67,832,839 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11166,220,502 - 66,347,159 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01166,243,789 - 66,371,033 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01166,984,906 - 67,115,079 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
membrane  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
SUSD1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11166,566,392 - 66,699,262 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1166,491,791 - 66,699,467 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1164,980,687 - 65,107,497 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01167,705,654 - 67,832,827 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1167,656,739 - 67,832,839 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11166,220,502 - 66,347,159 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01166,243,789 - 66,371,033 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01166,984,906 - 67,115,079 (-)NCBIUU_Cfam_GSD_1.0
SUSD1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389112,040,783 - 112,175,297 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9112,040,783 - 112,175,297 (-)EnsemblGRCh38hg38GRCh38
GRCh379114,803,063 - 114,937,577 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 369113,842,882 - 113,977,377 (-)NCBINCBI36Build 36hg18NCBI36
Build 349111,882,616 - 112,017,111NCBI
Celera985,302,059 - 85,436,554 (-)NCBICelera
Cytogenetic Map9q31.3-q32NCBI
HuRef984,401,174 - 84,536,088 (-)NCBIHuRef
CHM1_19114,949,460 - 115,083,983 (-)NCBICHM1_1
T2T-CHM13v2.09124,212,182 - 124,346,454 (-)NCBIT2T-CHM13v2.0
Susd1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39459,314,190 - 59,438,738 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl459,314,683 - 59,438,633 (-)EnsemblGRCm39 Ensembl
GRCm38459,314,202 - 59,439,869 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl459,314,683 - 59,438,633 (-)EnsemblGRCm38mm10GRCm38
MGSCv37459,327,555 - 59,451,505 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36459,423,264 - 59,532,681 (-)NCBIMGSCv36mm8
Celera459,231,835 - 59,355,798 (-)NCBICelera
Cytogenetic Map4B3NCBI
cM Map432.5NCBI
Susd1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8578,952,781 - 79,076,121 (-)NCBIGRCr8
mRatBN7.2574,157,653 - 74,281,171 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl574,157,773 - 74,276,291 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0576,514,780 - 76,636,486 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl576,416,739 - 76,632,462 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0580,652,549 - 80,774,351 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4577,390,911 - 77,482,412 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1577,395,737 - 77,504,530 (-)NCBI
Celera572,977,842 - 73,098,844 (-)NCBICelera
Cytogenetic Map5q24NCBI
Susd1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541915,144,573 - 15,282,962 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541915,153,722 - 15,287,373 (+)NCBIChiLan1.0ChiLan1.0
SUSD1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21127,256,423 - 27,406,734 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1927,259,224 - 27,394,194 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0983,170,775 - 83,305,894 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19111,327,684 - 111,445,038 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9111,327,686 - 111,445,044 (-)Ensemblpanpan1.1panPan2
Susd1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947181,919,818 - 182,056,226 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365591,241,656 - 1,344,048 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365591,210,323 - 1,344,455 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SUSD1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1252,781,491 - 252,956,179 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11252,819,956 - 252,956,513 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21283,608,946 - 283,742,634 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SUSD1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11227,355,791 - 27,470,743 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603515,310,181 - 15,446,670 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Susd1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476022,812,917 - 22,929,109 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476022,799,124 - 22,933,831 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in SUSD1
1793 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 4 1 6 6 2 9
Low 1 4 16 6 6 6 6 10 8 1 6
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSCAFT00000004830   ⟹   ENSCAFP00000004476
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1166,570,135 - 66,699,467 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000075085   ⟹   ENSCAFP00000063441
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1166,570,389 - 66,699,467 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000075362   ⟹   ENSCAFP00000064749
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1166,575,866 - 66,699,467 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000077491   ⟹   ENSCAFP00000049887
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1166,491,791 - 66,699,467 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000081420   ⟹   ENSCAFP00000061015
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1166,570,135 - 66,699,467 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000091575   ⟹   ENSCAFP00000064583
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1166,587,005 - 66,699,467 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845010468   ⟹   ENSCAFP00845008136
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1167,656,739 - 67,822,249 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845010514   ⟹   ENSCAFP00845008177
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1167,705,691 - 67,832,839 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845010553   ⟹   ENSCAFP00845008213
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1167,705,799 - 67,822,249 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845010601   ⟹   ENSCAFP00845008256
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1167,711,530 - 67,822,249 (-)Ensembl
RefSeq Acc Id: XM_038491217   ⟹   XP_038347145
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11166,220,502 - 66,347,159 (-)NCBI
RefSeq Acc Id: XM_038553300   ⟹   XP_038409228
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01166,984,906 - 67,115,079 (-)NCBI
RefSeq Acc Id: XM_038617188   ⟹   XP_038473116
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01166,243,789 - 66,371,033 (-)NCBI
RefSeq Acc Id: XM_038668422   ⟹   XP_038524350
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha1164,980,687 - 65,107,497 (-)NCBI
RefSeq Acc Id: XM_038682635   ⟹   XP_038538563
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01167,705,654 - 67,832,827 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: ENSCAFP00000049887   ⟸   ENSCAFT00000077491
RefSeq Acc Id: ENSCAFP00000004476   ⟸   ENSCAFT00000004830
RefSeq Acc Id: ENSCAFP00000064583   ⟸   ENSCAFT00000091575
RefSeq Acc Id: ENSCAFP00000063441   ⟸   ENSCAFT00000075085
RefSeq Acc Id: ENSCAFP00000064749   ⟸   ENSCAFT00000075362
RefSeq Acc Id: ENSCAFP00000061015   ⟸   ENSCAFT00000081420
RefSeq Acc Id: XP_038347145   ⟸   XM_038491217
RefSeq Acc Id: XP_038473116   ⟸   XM_038617188
RefSeq Acc Id: XP_038538563   ⟸   XM_038682635
- UniProtKB: A0A8C0SR83 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038524350   ⟸   XM_038668422
- UniProtKB: A0A8C0SR83 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038409228   ⟸   XM_038553300
- UniProtKB: A0A8C0SR83 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845008256   ⟸   ENSCAFT00845010601
RefSeq Acc Id: ENSCAFP00845008213   ⟸   ENSCAFT00845010553
RefSeq Acc Id: ENSCAFP00845008177   ⟸   ENSCAFT00845010514
RefSeq Acc Id: ENSCAFP00845008136   ⟸   ENSCAFT00845010468
Protein Domains
EGF-like   Sushi

Promoters
RGD ID:13685306
Promoter ID:EPDNEW_C3370
Type:single initiation site
Name:SUSD1_1
Description:sushi domain containing 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11166,699,420 - 66,699,480EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000003013 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030007479 UniProtKB/TrEMBL
  ENSCAFG00040014486 UniProtKB/TrEMBL
  ENSCAFG00845005810 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000004830.5 UniProtKB/TrEMBL
  ENSCAFT00000075362.2 UniProtKB/TrEMBL
  ENSCAFT00000077491.2 UniProtKB/TrEMBL
  ENSCAFT00000081420.2 UniProtKB/TrEMBL
  ENSCAFT00030014549.1 UniProtKB/TrEMBL
  ENSCAFT00040027728.1 UniProtKB/TrEMBL
  ENSCAFT00845010468.1 UniProtKB/TrEMBL
  ENSCAFT00845010514 ENTREZGENE
  ENSCAFT00845010514.1 UniProtKB/TrEMBL
  ENSCAFT00845010553.1 UniProtKB/TrEMBL
  ENSCAFT00845010601.1 UniProtKB/TrEMBL
Gene3D-CATH Complement Module, domain 1 UniProtKB/TrEMBL
  Laminin UniProtKB/TrEMBL
InterPro EGF-like_Ca-bd_dom UniProtKB/TrEMBL
  EGF-like_dom UniProtKB/TrEMBL
  EGF-type_Asp/Asn_hydroxyl_site UniProtKB/TrEMBL
  EGF_Ca-bd_CS UniProtKB/TrEMBL
  Growth_fac_rcpt_cys_sf UniProtKB/TrEMBL
  Sushi/SCR/CCP_sf UniProtKB/TrEMBL
  Sushi_SCR_CCP_dom UniProtKB/TrEMBL
NCBI Gene SUSD1 ENTREZGENE
PANTHER SUSHI DOMAIN-CONTAINING PROTEIN 1 UniProtKB/TrEMBL
  SUSHI DOMAIN-CONTAINING PROTEIN 1 UniProtKB/TrEMBL
Pfam EGF_CA UniProtKB/TrEMBL
  Sushi UniProtKB/TrEMBL
PROSITE ASX_HYDROXYL UniProtKB/TrEMBL
  EGF_2 UniProtKB/TrEMBL
  EGF_3 UniProtKB/TrEMBL
  EGF_CA UniProtKB/TrEMBL
  SUSHI UniProtKB/TrEMBL
SMART CCP UniProtKB/TrEMBL
  EGF UniProtKB/TrEMBL
  EGF_CA UniProtKB/TrEMBL
Superfamily-SCOP SSF57184 UniProtKB/TrEMBL
  SSF57535 UniProtKB/TrEMBL
UniProt A0A8C0SR83 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3MQK1_CANLF UniProtKB/TrEMBL
  A0A8I3MQU6_CANLF UniProtKB/TrEMBL
  A0A8I3MSW9_CANLF UniProtKB/TrEMBL
  A0A8I3MT02_CANLF UniProtKB/TrEMBL
  A0A8P0P9V2_CANLF UniProtKB/TrEMBL
  A0A8P0PDC1_CANLF UniProtKB/TrEMBL
  A0A8P0S8R9_CANLF UniProtKB/TrEMBL
  A0A8P0T2M7_CANLF UniProtKB/TrEMBL
VGNC ID VGNC:46997 ENTREZGENE