HSPA4L (heat shock protein family A (Hsp70) member 4 like) - Rat Genome Database

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Gene: HSPA4L (heat shock protein family A (Hsp70) member 4 like) Canis lupus familiaris
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Symbol: HSPA4L
Name: heat shock protein family A (Hsp70) member 4 like
RGD ID: 12251470
Description: ENCODES a protein that exhibits ATP binding (inferred); ATP-dependent protein folding chaperone (inferred); nucleotide binding (inferred); INVOLVED IN response to unfolded protein (ortholog); ASSOCIATED WITH genetic disease (ortholog); neuronal ceroid lipofuscinosis 7 (ortholog); FOUND IN cytoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: heat shock 70 kDa protein 4L
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11913,105,017 - 13,157,047 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1913,106,044 - 13,156,886 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1913,294,730 - 13,344,806 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01913,193,960 - 13,247,047 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1913,195,035 - 13,245,775 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11913,167,146 - 13,220,197 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01913,453,641 - 13,506,105 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01913,914,616 - 13,967,679 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (ISO)
cytosol  (IEA)
nucleus  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
HSPA4L
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11913,105,017 - 13,157,047 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1913,106,044 - 13,156,886 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1913,294,730 - 13,344,806 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01913,193,960 - 13,247,047 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1913,195,035 - 13,245,775 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11913,167,146 - 13,220,197 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01913,453,641 - 13,506,105 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01913,914,616 - 13,967,679 (-)NCBIUU_Cfam_GSD_1.0
HSPA4L
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh384127,781,796 - 127,840,733 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl4127,781,821 - 127,840,733 (+)EnsemblGRCh38hg38GRCh38
GRCh374128,702,951 - 128,761,888 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 364128,922,903 - 128,973,976 (+)NCBINCBI36Build 36hg18NCBI36
Build 344129,061,057 - 129,112,127NCBI
Celera4126,082,422 - 126,133,472 (+)NCBICelera
Cytogenetic Map4q28.1NCBI
HuRef4124,431,126 - 124,482,187 (+)NCBIHuRef
CHM1_14128,679,911 - 128,730,981 (+)NCBICHM1_1
T2T-CHM13v2.04131,084,803 - 131,143,731 (+)NCBIT2T-CHM13v2.0
Hspa4l
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39340,698,664 - 40,750,538 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl340,699,814 - 40,750,538 (+)EnsemblGRCm39 Ensembl
GRCm38340,744,500 - 40,796,103 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl340,745,382 - 40,796,103 (+)EnsemblGRCm38mm10GRCm38
GRCm38.p6 Ensembl340,744,495 - 40,796,103 (+)EnsemblGRCm38mm10GRCm38
MGSCv37340,549,535 - 40,594,287 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36340,842,162 - 40,886,914 (+)NCBIMGSCv36mm8
Celera340,475,179 - 40,519,922 (+)NCBICelera
Cytogenetic Map3BNCBI
cM Map319.51NCBI
Hspa4l
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82125,668,346 - 125,726,404 (+)NCBIGRCr8
mRatBN7.22123,740,384 - 123,793,088 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2123,740,384 - 123,793,084 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2130,310,874 - 130,363,567 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02128,423,324 - 128,476,003 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02123,052,445 - 123,105,139 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02127,625,737 - 127,682,864 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2127,625,683 - 127,677,503 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02147,228,755 - 147,285,924 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42127,697,504 - 127,751,085 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12127,647,466 - 127,700,988 (+)NCBI
Celera2118,648,388 - 118,701,051 (+)NCBICelera
Cytogenetic Map2q26NCBI
Hspa4l
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542813,589,532 - 13,644,079 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542813,589,532 - 13,644,079 (-)NCBIChiLan1.0ChiLan1.0
HSPA4L
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v23125,539,361 - 125,612,024 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan14125,805,487 - 125,870,165 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v04119,946,233 - 120,004,602 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.14131,251,993 - 131,303,499 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl4131,251,354 - 131,303,499 (+)Ensemblpanpan1.1panPan2
Hspa4l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530161,577,372 - 61,620,976 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366422,868,950 - 2,914,995 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366422,869,275 - 2,907,818 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HSPA4L
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl897,032,189 - 97,089,949 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1897,032,179 - 97,088,240 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.28103,897,623 - 103,953,357 (-)NCBISscrofa10.2Sscrofa10.2susScr3
HSPA4L
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1774,901,060 - 74,956,458 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl774,901,029 - 74,955,328 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603754,035,156 - 54,090,683 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Hspa4l
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247778,711,869 - 8,780,297 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247778,711,780 - 8,780,091 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in HSPA4L
598 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 6 4 12 8
Low 5 5 10 6 2 10 6
Below cutoff 6 6 6 6

Sequence


RefSeq Acc Id: ENSCAFT00000006283   ⟹   ENSCAFP00000005822
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1913,106,044 - 13,156,886 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845030721   ⟹   ENSCAFP00845024099
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1913,195,035 - 13,245,599 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845030856   ⟹   ENSCAFP00845024188
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1913,195,114 - 13,245,775 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845030975   ⟹   ENSCAFP00845024272
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1913,195,638 - 13,245,583 (-)Ensembl
RefSeq Acc Id: XM_038425798   ⟹   XP_038281726
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01913,193,960 - 13,247,047 (-)NCBI
RefSeq Acc Id: XM_038425799   ⟹   XP_038281727
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01913,196,048 - 13,246,175 (-)NCBI
RefSeq Acc Id: XM_038502035   ⟹   XP_038357963
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11913,167,146 - 13,220,197 (-)NCBI
RefSeq Acc Id: XM_038502036   ⟹   XP_038357964
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11913,169,234 - 13,219,325 (-)NCBI
RefSeq Acc Id: XM_038564700   ⟹   XP_038420628
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01913,914,616 - 13,967,679 (-)NCBI
RefSeq Acc Id: XM_038564701   ⟹   XP_038420629
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01913,916,704 - 13,966,807 (-)NCBI
RefSeq Acc Id: XM_038628812   ⟹   XP_038484740
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01913,453,641 - 13,506,105 (-)NCBI
RefSeq Acc Id: XM_038628813   ⟹   XP_038484741
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01913,454,666 - 13,505,229 (-)NCBI
RefSeq Acc Id: XM_533297   ⟹   XP_533297
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11913,106,042 - 13,156,125 (-)NCBI
Dog10K_Boxer_Tasha1913,294,730 - 13,344,806 (-)NCBI
Sequence:
RefSeq Acc Id: XP_533297   ⟸   XM_533297
- Peptide Label: isoform X2
- UniProtKB: A0A8C0KWW2 (UniProtKB/TrEMBL),   A0A8C0MP67 (UniProtKB/TrEMBL),   A0A8I3P2E0 (UniProtKB/TrEMBL),   A0A8I3NXH9 (UniProtKB/TrEMBL),   A0A8P0PKQ7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000005822   ⟸   ENSCAFT00000006283
RefSeq Acc Id: XP_038357963   ⟸   XM_038502035
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038357964   ⟸   XM_038502036
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038484740   ⟸   XM_038628812
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038484741   ⟸   XM_038628813
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038281726   ⟸   XM_038425798
- Peptide Label: isoform X1
- UniProtKB: A0A8C0MXY5 (UniProtKB/TrEMBL),   A0A8I3NXH9 (UniProtKB/TrEMBL),   A0A8P0PKQ7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038281727   ⟸   XM_038425799
- Peptide Label: isoform X2
- UniProtKB: A0A8C0KWW2 (UniProtKB/TrEMBL),   A0A8C0MP67 (UniProtKB/TrEMBL),   A0A8I3P2E0 (UniProtKB/TrEMBL),   A0A8I3NXH9 (UniProtKB/TrEMBL),   A0A8P0PKQ7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038420628   ⟸   XM_038564700
- Peptide Label: isoform X1
- UniProtKB: A0A8C0MXY5 (UniProtKB/TrEMBL),   A0A8I3NXH9 (UniProtKB/TrEMBL),   A0A8P0PKQ7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038420629   ⟸   XM_038564701
- Peptide Label: isoform X2
- UniProtKB: A0A8C0KWW2 (UniProtKB/TrEMBL),   A0A8C0MP67 (UniProtKB/TrEMBL),   A0A8I3NXH9 (UniProtKB/TrEMBL),   A0A8I3P2E0 (UniProtKB/TrEMBL),   A0A8P0PKQ7 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845024099   ⟸   ENSCAFT00845030721
RefSeq Acc Id: ENSCAFP00845024272   ⟸   ENSCAFT00845030975
RefSeq Acc Id: ENSCAFP00845024188   ⟸   ENSCAFT00845030856


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000003896 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030008033 UniProtKB/TrEMBL
  ENSCAFG00040011709 UniProtKB/TrEMBL
  ENSCAFG00845017338 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000006283.5 UniProtKB/TrEMBL
  ENSCAFT00000094824.1 UniProtKB/TrEMBL
  ENSCAFT00000101776.1 UniProtKB/TrEMBL
  ENSCAFT00000109885.1 UniProtKB/TrEMBL
  ENSCAFT00030015040.1 UniProtKB/TrEMBL
  ENSCAFT00030015220.1 UniProtKB/TrEMBL
  ENSCAFT00030015349.1 UniProtKB/TrEMBL
  ENSCAFT00040021764.1 UniProtKB/TrEMBL
  ENSCAFT00845030721.1 UniProtKB/TrEMBL
  ENSCAFT00845030856 ENTREZGENE
  ENSCAFT00845030856.1 UniProtKB/TrEMBL
  ENSCAFT00845030975.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1270.10 UniProtKB/TrEMBL
  3.30.30.30 UniProtKB/TrEMBL
  3.30.420.40 UniProtKB/TrEMBL
InterPro ATPase_NBD UniProtKB/TrEMBL
  Heat_shock_70_CS UniProtKB/TrEMBL
  HSP70_C_sf UniProtKB/TrEMBL
  HSP70_peptide-bd_sf UniProtKB/TrEMBL
  Hsp_70_fam UniProtKB/TrEMBL
  HSPA4L_NBD UniProtKB/TrEMBL
KEGG Report cfa:476089 UniProtKB/TrEMBL
NCBI Gene HSPA4L ENTREZGENE
PANTHER HEAT SHOCK 70 KDA PROTEIN 4L UniProtKB/TrEMBL
  HSC70CB, ISOFORM G-RELATED UniProtKB/TrEMBL
Pfam HSP70 UniProtKB/TrEMBL
PRINTS HEATSHOCK70 UniProtKB/TrEMBL
PROSITE HSP70_2 UniProtKB/TrEMBL
  HSP70_3 UniProtKB/TrEMBL
Superfamily-SCOP SSF100920 UniProtKB/TrEMBL
  SSF100934 UniProtKB/TrEMBL
  SSF53067 UniProtKB/TrEMBL
UniProt A0A8C0KWW2 ENTREZGENE
  A0A8C0MP67 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0MPF4_CANLF UniProtKB/TrEMBL
  A0A8C0MXY5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3NXH9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3P2E0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3P2I0_CANLF UniProtKB/TrEMBL
  A0A8P0PKQ7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0PKS3_CANLF UniProtKB/TrEMBL
VGNC ID VGNC:54806 ENTREZGENE