OR6E1 (olfactory receptor family 6 subfamily E member 1) - Rat Genome Database

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Gene: OR6E1 (olfactory receptor family 6 subfamily E member 1) Canis lupus familiaris
Analyze
Symbol: OR6E1
Name: olfactory receptor family 6 subfamily E member 1
RGD ID: 12248748
Description: Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]
Type: protein-coding
RefSeq Status: INFERRED
Previously known as: LOC490601; olfactory receptor 49-like
RGD Orthologs
Human
Mouse
Rat
Bonobo
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.183,070,746 - 3,071,675 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl83,070,746 - 3,071,675 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha83,019,257 - 3,020,186 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.083,177,411 - 3,178,340 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl83,177,411 - 3,178,340 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.182,870,086 - 2,871,015 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.082,931,456 - 2,932,385 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.083,193,515 - 3,194,444 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
OR6E1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.183,070,746 - 3,071,675 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl83,070,746 - 3,071,675 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha83,019,257 - 3,020,186 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.083,177,411 - 3,178,340 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl83,177,411 - 3,178,340 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.182,870,086 - 2,871,015 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.082,931,456 - 2,932,385 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.083,193,515 - 3,194,444 (+)NCBIUU_Cfam_GSD_1.0
OR6J1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381422,630,929 - 22,644,352 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1422,630,929 - 22,644,352 (-)EnsemblGRCh38hg38GRCh38
GRCh371423,099,834 - 23,113,561 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361422,172,500 - 22,173,489 (-)NCBINCBI36Build 36hg18NCBI36
Celera142,965,704 - 2,966,693 (-)NCBICelera
Cytogenetic Map14q11.2NCBI
HuRef143,221,046 - 3,222,035 (-)NCBIHuRef
CHM1_11423,101,657 - 23,102,646 (-)NCBICHM1_1
T2T-CHM13v2.01416,828,656 - 16,842,613 (-)NCBIT2T-CHM13v2.0
Or6e1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391454,519,353 - 54,520,382 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1454,515,710 - 54,522,396 (-)EnsemblGRCm39 Ensembl
GRCm381454,281,896 - 54,282,925 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1454,278,253 - 54,284,939 (-)EnsemblGRCm38mm10GRCm38
MGSCv371454,901,571 - 54,902,600 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361453,239,602 - 53,240,543 (-)NCBIMGSCv36mm8
Celera1452,078,130 - 52,079,159 (-)NCBICelera
Cytogenetic Map14C2NCBI
cM Map1427.72NCBI
Or6e1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81531,703,919 - 31,704,863 (-)NCBIGRCr8
mRatBN7.21527,733,881 - 27,734,825 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1527,729,827 - 27,736,945 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1529,575,618 - 29,576,561 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01530,722,275 - 30,723,219 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01528,972,317 - 28,973,261 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01532,924,729 - 32,925,673 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1532,924,729 - 32,925,673 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01536,736,034 - 36,736,978 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41532,344,133 - 32,345,077 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11532,359,832 - 32,360,777 (-)NCBI
Celera1527,316,043 - 27,316,987 (-)NCBICelera
Cytogenetic Map15p13NCBI
LOC100994199
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21524,082,186 - 24,083,229 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11423,298,672 - 23,299,715 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0143,469,849 - 3,471,115 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11421,570,785 - 21,572,051 (-)NCBIpanpan1.1PanPan1.1panPan2
LOC101962528
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864034,799,707 - 34,800,786 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049367221,588,272 - 1,589,207 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LOC100151899
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl776,392,243 - 76,393,292 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1776,391,888 - 76,394,215 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2781,628,471 - 81,630,753 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103231524
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12922,995,327 - 23,001,140 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605923,422,144 - 23,428,342 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in OR6E1
1 total Variants

Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCAFT00000076891   ⟹   ENSCAFP00000060025
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl83,070,746 - 3,071,675 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845003458   ⟹   ENSCAFP00845002742
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl83,177,411 - 3,178,340 (+)Ensembl
RefSeq Acc Id: NM_001388808   ⟹   NP_001375737
RefSeq Status: INFERRED
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha83,019,257 - 3,020,186 (+)NCBI
ROS_Cfam_1.083,177,411 - 3,178,340 (+)NCBI
UMICH_Zoey_3.182,870,086 - 2,871,015 (+)NCBI
UNSW_CanFamBas_1.082,931,456 - 2,932,385 (+)NCBI
UU_Cfam_GSD_1.083,193,515 - 3,194,444 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001375737 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCAFP00000060025.1
  ENSCAFP00030031261.1
  ENSCAFP00040001000.1
  ENSCAFP00845002742
  ENSCAFP00845002742.1
Reference Protein Sequences
RefSeq Acc Id: ENSCAFP00000060025   ⟸   ENSCAFT00000076891
RefSeq Acc Id: NP_001375737   ⟸   NM_001388808
- UniProtKB: A0A8C0K1R8 (UniProtKB/TrEMBL),   A0A8I3MEQ9 (UniProtKB/TrEMBL),   A0A8P0P954 (UniProtKB/TrEMBL),   A0A8C0NWL6 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845002742   ⟸   ENSCAFT00845003458
Protein Domains
G-protein coupled receptors family 1 profile


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000044223 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030019529 UniProtKB/TrEMBL
  ENSCAFG00040000662 UniProtKB/TrEMBL
  ENSCAFG00845001980 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000076891.2 UniProtKB/TrEMBL
  ENSCAFT00030035848.1 UniProtKB/TrEMBL
  ENSCAFT00040001178.1 UniProtKB/TrEMBL
  ENSCAFT00845003458 ENTREZGENE
  ENSCAFT00845003458.1 UniProtKB/TrEMBL
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro GPCR_Rhodpsn UniProtKB/TrEMBL
  GPCR_Rhodpsn_7TM UniProtKB/TrEMBL
  Olfact_rcpt UniProtKB/TrEMBL
  Olfact_rcpt_6C-like UniProtKB/TrEMBL
NCBI Gene LOC490601 ENTREZGENE
PANTHER OLFACTORY RECEPTOR UniProtKB/TrEMBL
  OLFACTORY RECEPTOR 49 UniProtKB/TrEMBL
Pfam 7tm_4 UniProtKB/TrEMBL
PRINTS GPCRRHODOPSN UniProtKB/TrEMBL
  OLFACTORYR UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
UniProt A0A8C0K1R8 ENTREZGENE
  A0A8C0NWL6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3MEQ9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0P954 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:97091 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-02-18 OR6E1  olfactory receptor family 6 subfamily E member 1  LOC490601  olfactory receptor 49-like  Symbol and/or name change 5135510 APPROVED