SLC7A5 (solute carrier family 7 member 5) - Rat Genome Database

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Gene: SLC7A5 (solute carrier family 7 member 5) Canis lupus familiaris
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Symbol: SLC7A5
Name: solute carrier family 7 member 5
RGD ID: 12247807
Description: ENCODES a protein that exhibits amino acid transmembrane transporter activity (inferred); antiporter activity (inferred); aromatic amino acid transmembrane transporter activity (inferred); INVOLVED IN cellular response to amino acid stimulus (ortholog); cellular response to glucose starvation (ortholog); cellular response to L-arginine (ortholog); PARTICIPATES IN amiloride pharmacodynamics pathway; bendroflumethiazide pharmacodynamics pathway; bumetanide pharmacodynamics pathway; ASSOCIATED WITH 16Q24.3 Microdeletion Syndrome (ortholog); adenoid cystic carcinoma (ortholog); allergic contact dermatitis (ortholog); FOUND IN apical plasma membrane (ortholog); basal plasma membrane (ortholog); basolateral plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: large neutral amino acids transporter small subunit 1; LAT1; solute carrier family 7 (cationic amino acid transporter, y+ system), member 5
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1565,313,105 - 65,343,858 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl565,313,105 - 65,343,858 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha565,323,236 - 65,353,508 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0565,532,866 - 65,563,141 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl565,532,793 - 65,565,302 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1565,558,337 - 65,588,569 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0565,390,029 - 65,420,262 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0565,797,114 - 65,827,358 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

References
Additional References at PubMed
PMID:22301074   PMID:22322188   PMID:25252639   PMID:25649314   PMID:30032202  


Genomics

Comparative Map Data
SLC7A5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1565,313,105 - 65,343,858 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl565,313,105 - 65,343,858 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha565,323,236 - 65,353,508 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0565,532,866 - 65,563,141 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl565,532,793 - 65,565,302 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1565,558,337 - 65,588,569 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0565,390,029 - 65,420,262 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0565,797,114 - 65,827,358 (+)NCBIUU_Cfam_GSD_1.0
SLC7A5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381687,830,023 - 87,869,507 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1687,830,023 - 87,869,507 (-)EnsemblGRCh38hg38GRCh38
GRCh371687,863,629 - 87,903,113 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361686,421,130 - 86,460,601 (-)NCBINCBI36Build 36hg18NCBI36
Build 341686,421,130 - 86,460,601NCBI
Celera1672,160,934 - 72,200,417 (-)NCBICelera
Cytogenetic Map16q24.2NCBI
HuRef1673,604,119 - 73,643,626 (-)NCBIHuRef
CHM1_11689,274,981 - 89,314,543 (-)NCBICHM1_1
T2T-CHM13v2.01693,902,734 - 93,942,286 (-)NCBIT2T-CHM13v2.0
Slc7a5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398122,607,885 - 122,634,425 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl8122,607,889 - 122,634,433 (-)EnsemblGRCm39 Ensembl
GRCm388121,881,146 - 121,907,686 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8121,881,150 - 121,907,694 (-)EnsemblGRCm38mm10GRCm38
MGSCv378124,405,046 - 124,431,586 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv368121,952,557 - 121,979,440 (-)NCBIMGSCv36mm8
MGSCv368124,767,240 - 124,802,593 (-)NCBIMGSCv36mm8
Celera8126,102,885 - 126,145,803 (-)NCBICelera
Cytogenetic Map8E1NCBI
cM Map870.8NCBI
Slc7a5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81966,843,808 - 66,872,412 (-)NCBIGRCr8
mRatBN7.21949,935,220 - 49,963,823 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1949,935,220 - 49,963,823 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1956,727,676 - 56,756,167 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01957,410,169 - 57,438,773 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01959,626,276 - 59,654,767 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01954,693,959 - 54,722,563 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1954,693,959 - 54,722,563 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01965,412,970 - 65,441,647 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41952,120,728 - 52,149,332 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11952,125,608 - 52,154,213 (-)NCBI
Celera1949,180,586 - 49,208,780 (-)NCBICelera
Cytogenetic Map19q12NCBI
Slc7a5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555412,103,384 - 2,130,310 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555412,103,437 - 2,129,668 (-)NCBIChiLan1.0ChiLan1.0
SLC7A5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21897,600,937 - 97,641,472 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan116103,515,885 - 103,556,386 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01668,512,407 - 68,552,763 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11687,827,058 - 87,854,154 (-)NCBIpanpan1.1PanPan1.1panPan2
Slc7a5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934925,759,563 - 25,783,919 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049366411,513,110 - 1,538,955 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC7A5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl61,545,944 - 1,574,285 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.161,545,940 - 1,574,298 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
SLC7A5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1573,229,953 - 73,269,801 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl573,229,951 - 73,269,754 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660472,438,818 - 2,479,135 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc7a5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247461,325,368 - 1,349,616 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in SLC7A5
351 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 3 6 6 8 3
Low 5 12 6 1 6 7 2
Below cutoff 5 7 6 6 5 4

Sequence


RefSeq Acc Id: ENSCAFT00000031663   ⟹   ENSCAFP00000029477
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl565,313,113 - 65,343,858 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000065111   ⟹   ENSCAFP00000061916
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl565,313,105 - 65,343,858 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000083744   ⟹   ENSCAFP00000060274
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl565,313,113 - 65,343,189 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845006770   ⟹   ENSCAFP00845005383
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl565,532,793 - 65,565,302 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845006788   ⟹   ENSCAFP00845005399
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl565,532,866 - 65,562,472 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845006797   ⟹   ENSCAFP00845005408
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl565,537,273 - 65,565,285 (+)Ensembl
RefSeq Acc Id: NM_001284482   ⟹   NP_001271411
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1565,313,105 - 65,343,858 (+)NCBI
Dog10K_Boxer_Tasha565,323,236 - 65,353,508 (+)NCBI
ROS_Cfam_1.0565,532,866 - 65,563,141 (+)NCBI
UMICH_Zoey_3.1565,558,337 - 65,588,569 (+)NCBI
UNSW_CanFamBas_1.0565,390,029 - 65,420,262 (+)NCBI
UU_Cfam_GSD_1.0565,797,114 - 65,827,358 (+)NCBI
Sequence:
RefSeq Acc Id: NP_001271411   ⟸   NM_001284482
- UniProtKB: K0J2W9 (UniProtKB/TrEMBL),   A0A8C0YX20 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000060274   ⟸   ENSCAFT00000083744
RefSeq Acc Id: ENSCAFP00000061916   ⟸   ENSCAFT00000065111
RefSeq Acc Id: ENSCAFP00000029477   ⟸   ENSCAFT00000031663
RefSeq Acc Id: ENSCAFP00845005399   ⟸   ENSCAFT00845006788
RefSeq Acc Id: ENSCAFP00845005408   ⟸   ENSCAFT00845006797
RefSeq Acc Id: ENSCAFP00845005383   ⟸   ENSCAFT00845006770

Promoters
RGD ID:13683407
Promoter ID:EPDNEW_C1474
Type:initiation region
Name:SLC7A5_1
Description:solute carrier family 7 member 5
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1565,313,009 - 65,313,069EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000019901 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030017462 UniProtKB/TrEMBL
  ENSCAFG00040012505 UniProtKB/TrEMBL
  ENSCAFG00845003789 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000031663.5 UniProtKB/TrEMBL
  ENSCAFT00000065111.2 UniProtKB/TrEMBL
  ENSCAFT00000083744.2 UniProtKB/TrEMBL
  ENSCAFT00000094382.1 UniProtKB/TrEMBL
  ENSCAFT00030032274.1 UniProtKB/TrEMBL
  ENSCAFT00030032369.1 UniProtKB/TrEMBL
  ENSCAFT00040023260.1 UniProtKB/TrEMBL
  ENSCAFT00040023348.1 UniProtKB/TrEMBL
  ENSCAFT00845006770 ENTREZGENE
  ENSCAFT00845006770.1 UniProtKB/TrEMBL
  ENSCAFT00845006788.1 UniProtKB/TrEMBL
  ENSCAFT00845006797.1 UniProtKB/TrEMBL
Gene3D-CATH Amino acid/polyamine transporter I UniProtKB/TrEMBL
InterPro AA/rel_permease1 UniProtKB/TrEMBL
  L_AA_transporter UniProtKB/TrEMBL
KEGG Report cfa:489667 UniProtKB/TrEMBL
NCBI Gene SLC7A5 ENTREZGENE
PANTHER AMINO ACID TRANSPORTER UniProtKB/TrEMBL
  LARGE NEUTRAL AMINO ACIDS TRANSPORTER SMALL SUBUNIT 1 UniProtKB/TrEMBL
Pfam AA_permease_2 UniProtKB/TrEMBL
PIRSF AA_transporter UniProtKB/TrEMBL
UniProt A0A8C0SE65_CANLF UniProtKB/TrEMBL
  A0A8C0YX20 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3MN20_CANLF UniProtKB/TrEMBL
  A0A8I3MVZ7_CANLF UniProtKB/TrEMBL
  A0A8I3RRM5_CANLF UniProtKB/TrEMBL
  A0A8P0PAU9_CANLF UniProtKB/TrEMBL
  A0A8P0PH81_CANLF UniProtKB/TrEMBL
  A0A8P0SNT9_CANLF UniProtKB/TrEMBL
  A0A8P0TC68_CANLF UniProtKB/TrEMBL
  K0J2W9 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:53447 ENTREZGENE