TTC23L (tetratricopeptide repeat domain 23 like) - Rat Genome Database

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Gene: TTC23L (tetratricopeptide repeat domain 23 like) Canis lupus familiaris
Analyze
Symbol: TTC23L
Name: tetratricopeptide repeat domain 23 like
RGD ID: 12246560
Description: ASSOCIATED WITH alpha-methylacyl-CoA racemase deficiency (ortholog); genetic disease (ortholog); Neurodevelopmental Disorders (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: tetratricopeptide repeat protein 23-like
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1473,395,974 - 73,455,567 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl473,400,166 - 73,453,498 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha473,012,406 - 73,071,821 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0473,901,731 - 73,961,222 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl473,904,118 - 73,959,170 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1473,649,284 - 73,708,403 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0473,772,742 - 73,831,929 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0474,305,963 - 74,365,826 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
TTC23L
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1473,395,974 - 73,455,567 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl473,400,166 - 73,453,498 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha473,012,406 - 73,071,821 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0473,901,731 - 73,961,222 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl473,904,118 - 73,959,170 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1473,649,284 - 73,708,403 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0473,772,742 - 73,831,929 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0474,305,963 - 74,365,826 (-)NCBIUU_Cfam_GSD_1.0
TTC23L
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38534,839,164 - 34,925,682 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl534,838,833 - 34,900,511 (+)EnsemblGRCh38hg38GRCh38
GRCh37534,839,269 - 34,925,787 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36534,875,026 - 34,935,324 (+)NCBINCBI36Build 36hg18NCBI36
Celera534,721,072 - 34,781,799 (+)NCBICelera
Cytogenetic Map5p13.2NCBI
HuRef534,787,782 - 34,847,729 (+)NCBIHuRef
CHM1_1534,841,468 - 34,901,927 (+)NCBICHM1_1
T2T-CHM13v2.0535,086,287 - 35,172,714 (+)NCBIT2T-CHM13v2.0
Ttc23l
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391510,497,309 - 10,559,006 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1510,500,188 - 10,558,754 (-)EnsemblGRCm39 Ensembl
GRCm381510,497,223 - 10,558,775 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1510,500,102 - 10,558,668 (-)EnsemblGRCm38mm10GRCm38
MGSCv371510,433,702 - 10,488,423 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361510,444,827 - 10,504,789 (-)NCBIMGSCv36mm8
Celera1510,305,843 - 10,360,380 (-)NCBICelera
Cytogenetic Map15A1NCBI
cM Map155.35NCBI
Ttc23l
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8261,203,825 - 61,265,453 (-)NCBIGRCr8
mRatBN7.2259,476,666 - 59,538,313 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl259,476,669 - 59,538,282 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0260,492,314 - 60,538,551 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl260,492,256 - 60,538,088 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0284,136,482 - 84,197,625 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4259,857,877 - 59,916,848 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera259,134,717 - 59,197,145 (+)NCBICelera
Cytogenetic Map2q16NCBI
Ttc23l
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542619,987,093 - 20,020,364 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542619,985,179 - 20,029,902 (+)NCBIChiLan1.0ChiLan1.0
TTC23L
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2475,436,262 - 75,499,618 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1573,584,931 - 73,653,250 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0575,470,535 - 75,532,771 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1580,750,710 - 80,810,923 (-)NCBIpanpan1.1PanPan1.1panPan2
Ttc23l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213224,663,609 - 224,721,156 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049365186,641,805 - 6,706,937 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TTC23L
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1620,443,661 - 20,478,632 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11620,441,253 - 20,491,569 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21621,343,863 - 21,402,683 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TTC23L
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1433,732,841 - 33,793,975 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl433,739,203 - 33,783,489 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607124,031,988 - 24,085,744 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ttc23l
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462475920,022,653 - 20,052,817 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in TTC23L
613 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 5 5 8
Low 5 17 6 6 6 6 7 10 6
Below cutoff 5 6

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005619408 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005619409 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_014113150 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022417938 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038474234 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038474235 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038474236 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038474237 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038474238 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038535361 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038535362 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038535363 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038535364 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038535365 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038599636 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038599637 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038599638 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038599639 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038599640 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038663950 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038663951 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038663952 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038663953 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038663954 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_536506 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002626123 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005324814 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005358603 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005393082 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005426217 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000052 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000088 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000355 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSCAFT00000029857   ⟹   ENSCAFP00000027749
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl473,407,219 - 73,453,498 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000073650   ⟹   ENSCAFP00000058647
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl473,400,239 - 73,453,498 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000082445   ⟹   ENSCAFP00000046599
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl473,415,354 - 73,453,498 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000086018   ⟹   ENSCAFP00000053437
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl473,400,166 - 73,453,498 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845001686   ⟹   ENSCAFP00845001331
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl473,904,118 - 73,959,170 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845001696   ⟹   ENSCAFP00845001340
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl473,905,996 - 73,959,170 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845001703   ⟹   ENSCAFP00845001346
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl473,912,976 - 73,959,170 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845001729   ⟹   ENSCAFP00845001367
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl473,921,119 - 73,959,170 (-)Ensembl
RefSeq Acc Id: XM_005619408   ⟹   XP_005619465
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1473,395,974 - 73,453,734 (-)NCBI
Dog10K_Boxer_Tasha473,012,406 - 73,069,991 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005619409   ⟹   XP_005619466
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1473,395,974 - 73,453,560 (-)NCBI
Dog10K_Boxer_Tasha473,012,406 - 73,069,830 (-)NCBI
Sequence:
RefSeq Acc Id: XM_014113150   ⟹   XP_013968625
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1473,395,974 - 73,455,566 (-)NCBI
Dog10K_Boxer_Tasha473,012,406 - 73,071,821 (-)NCBI
Sequence:
RefSeq Acc Id: XM_022417938   ⟹   XP_022273646
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1473,395,974 - 73,453,560 (-)NCBI
Dog10K_Boxer_Tasha473,012,406 - 73,069,830 (-)NCBI
Sequence:
RefSeq Acc Id: XM_038474234   ⟹   XP_038330162
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1473,649,284 - 73,708,403 (-)NCBI
RefSeq Acc Id: XM_038474235   ⟹   XP_038330163
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1473,649,284 - 73,706,416 (-)NCBI
RefSeq Acc Id: XM_038474236   ⟹   XP_038330164
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1473,649,284 - 73,706,416 (-)NCBI
RefSeq Acc Id: XM_038474237   ⟹   XP_038330165
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1473,649,284 - 73,706,574 (-)NCBI
RefSeq Acc Id: XM_038474238   ⟹   XP_038330166
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1473,649,284 - 73,706,416 (-)NCBI
RefSeq Acc Id: XM_038535361   ⟹   XP_038391289
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0474,305,963 - 74,365,826 (-)NCBI
RefSeq Acc Id: XM_038535362   ⟹   XP_038391290
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0474,305,963 - 74,363,839 (-)NCBI
RefSeq Acc Id: XM_038535363   ⟹   XP_038391291
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0474,305,963 - 74,363,839 (-)NCBI
RefSeq Acc Id: XM_038535364   ⟹   XP_038391292
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0474,305,963 - 74,363,995 (-)NCBI
RefSeq Acc Id: XM_038535365   ⟹   XP_038391293
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0474,305,963 - 74,363,839 (-)NCBI
RefSeq Acc Id: XM_038599636   ⟹   XP_038455564
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0473,772,742 - 73,831,929 (-)NCBI
RefSeq Acc Id: XM_038599637   ⟹   XP_038455565
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0473,772,742 - 73,829,937 (-)NCBI
RefSeq Acc Id: XM_038599638   ⟹   XP_038455566
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0473,772,742 - 73,829,937 (-)NCBI
RefSeq Acc Id: XM_038599639   ⟹   XP_038455567
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0473,772,742 - 73,830,099 (-)NCBI
RefSeq Acc Id: XM_038599640   ⟹   XP_038455568
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0473,772,742 - 73,829,937 (-)NCBI
RefSeq Acc Id: XM_038663950   ⟹   XP_038519878
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0473,901,731 - 73,961,222 (-)NCBI
RefSeq Acc Id: XM_038663951   ⟹   XP_038519879
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0473,901,731 - 73,959,232 (-)NCBI
RefSeq Acc Id: XM_038663952   ⟹   XP_038519880
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0473,901,731 - 73,959,232 (-)NCBI
RefSeq Acc Id: XM_038663953   ⟹   XP_038519881
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0473,901,731 - 73,959,393 (-)NCBI
RefSeq Acc Id: XM_038663954   ⟹   XP_038519882
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0473,901,731 - 73,959,232 (-)NCBI
RefSeq Acc Id: XM_536506   ⟹   XP_536506
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1473,395,974 - 73,453,560 (-)NCBI
Dog10K_Boxer_Tasha473,012,406 - 73,069,830 (-)NCBI
Sequence:
RefSeq Acc Id: XR_002626123
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1473,395,974 - 73,455,567 (-)NCBI
Dog10K_Boxer_Tasha473,012,406 - 73,071,821 (-)NCBI
Sequence:
RefSeq Acc Id: XR_005324814
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1473,649,284 - 73,708,403 (-)NCBI
RefSeq Acc Id: XR_005358603
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0474,305,963 - 74,365,826 (-)NCBI
RefSeq Acc Id: XR_005393082
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0473,774,906 - 73,831,929 (-)NCBI
RefSeq Acc Id: XR_005426217
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0473,901,731 - 73,961,222 (-)NCBI
Protein Sequences
Protein RefSeqs XP_005619465 (Get FASTA)   NCBI Sequence Viewer  
  XP_005619466 (Get FASTA)   NCBI Sequence Viewer  
  XP_013968625 (Get FASTA)   NCBI Sequence Viewer  
  XP_022273646 (Get FASTA)   NCBI Sequence Viewer  
  XP_038330162 (Get FASTA)   NCBI Sequence Viewer  
  XP_038330163 (Get FASTA)   NCBI Sequence Viewer  
  XP_038330164 (Get FASTA)   NCBI Sequence Viewer  
  XP_038330165 (Get FASTA)   NCBI Sequence Viewer  
  XP_038330166 (Get FASTA)   NCBI Sequence Viewer  
  XP_038391289 (Get FASTA)   NCBI Sequence Viewer  
  XP_038391290 (Get FASTA)   NCBI Sequence Viewer  
  XP_038391291 (Get FASTA)   NCBI Sequence Viewer  
  XP_038391292 (Get FASTA)   NCBI Sequence Viewer  
  XP_038391293 (Get FASTA)   NCBI Sequence Viewer  
  XP_038455564 (Get FASTA)   NCBI Sequence Viewer  
  XP_038455565 (Get FASTA)   NCBI Sequence Viewer  
  XP_038455566 (Get FASTA)   NCBI Sequence Viewer  
  XP_038455567 (Get FASTA)   NCBI Sequence Viewer  
  XP_038455568 (Get FASTA)   NCBI Sequence Viewer  
  XP_038519878 (Get FASTA)   NCBI Sequence Viewer  
  XP_038519879 (Get FASTA)   NCBI Sequence Viewer  
  XP_038519880 (Get FASTA)   NCBI Sequence Viewer  
  XP_038519881 (Get FASTA)   NCBI Sequence Viewer  
  XP_038519882 (Get FASTA)   NCBI Sequence Viewer  
  XP_536506 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCAFP00000027749.4
  ENSCAFP00000046599.1
  ENSCAFP00000053437.1
  ENSCAFP00000058647.1
  ENSCAFP00040017954.1
  ENSCAFP00040017988.1
  ENSCAFP00845001331.1
  ENSCAFP00845001340.1
  ENSCAFP00845001346
  ENSCAFP00845001346.1
  ENSCAFP00845001367.1
RefSeq Acc Id: XP_013968625   ⟸   XM_014113150
- Peptide Label: isoform X1
- UniProtKB: A0A8I3MDG5 (UniProtKB/TrEMBL),   A0A8P0SMU2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005619465   ⟸   XM_005619408
- Peptide Label: isoform X3
- UniProtKB: A0A8I3MDG5 (UniProtKB/TrEMBL),   A0A8P0SMU2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_536506   ⟸   XM_536506
- Peptide Label: isoform X2
- UniProtKB: A0A8I3MDG5 (UniProtKB/TrEMBL),   A0A8P0SMU2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005619466   ⟸   XM_005619409
- Peptide Label: isoform X3
- UniProtKB: A0A8I3MDG5 (UniProtKB/TrEMBL),   A0A8P0SMU2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_022273646   ⟸   XM_022417938
- Peptide Label: isoform X3
- UniProtKB: A0A8I3MDG5 (UniProtKB/TrEMBL),   A0A8P0SMU2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000027749   ⟸   ENSCAFT00000029857
RefSeq Acc Id: ENSCAFP00000058647   ⟸   ENSCAFT00000073650
RefSeq Acc Id: ENSCAFP00000053437   ⟸   ENSCAFT00000086018
RefSeq Acc Id: ENSCAFP00000046599   ⟸   ENSCAFT00000082445
RefSeq Acc Id: XP_038330162   ⟸   XM_038474234
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038330165   ⟸   XM_038474237
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038330166   ⟸   XM_038474238
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038330163   ⟸   XM_038474235
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038330164   ⟸   XM_038474236
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038455564   ⟸   XM_038599636
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038455567   ⟸   XM_038599639
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038455568   ⟸   XM_038599640
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038455565   ⟸   XM_038599637
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038455566   ⟸   XM_038599638
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038519878   ⟸   XM_038663950
- Peptide Label: isoform X1
- UniProtKB: A0A8I3MDG5 (UniProtKB/TrEMBL),   A0A8P0SMU2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038519881   ⟸   XM_038663953
- Peptide Label: isoform X3
- UniProtKB: A0A8I3MDG5 (UniProtKB/TrEMBL),   A0A8P0SMU2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038519882   ⟸   XM_038663954
- Peptide Label: isoform X3
- UniProtKB: A0A8I3MDG5 (UniProtKB/TrEMBL),   A0A8P0SMU2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038519879   ⟸   XM_038663951
- Peptide Label: isoform X2
- UniProtKB: A0A8I3MDG5 (UniProtKB/TrEMBL),   A0A8P0SMU2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038519880   ⟸   XM_038663952
- Peptide Label: isoform X3
- UniProtKB: A0A8I3MDG5 (UniProtKB/TrEMBL),   A0A8P0SMU2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038391289   ⟸   XM_038535361
- Peptide Label: isoform X1
- UniProtKB: A0A8I3MDG5 (UniProtKB/TrEMBL),   A0A8P0SMU2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038391292   ⟸   XM_038535364
- Peptide Label: isoform X3
- UniProtKB: A0A8I3MDG5 (UniProtKB/TrEMBL),   A0A8P0SMU2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038391293   ⟸   XM_038535365
- Peptide Label: isoform X3
- UniProtKB: A0A8I3MDG5 (UniProtKB/TrEMBL),   A0A8P0SMU2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038391290   ⟸   XM_038535362
- Peptide Label: isoform X2
- UniProtKB: A0A8I3MDG5 (UniProtKB/TrEMBL),   A0A8P0SMU2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038391291   ⟸   XM_038535363
- Peptide Label: isoform X3
- UniProtKB: A0A8I3MDG5 (UniProtKB/TrEMBL),   A0A8P0SMU2 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845001346   ⟸   ENSCAFT00845001703
RefSeq Acc Id: ENSCAFP00845001340   ⟸   ENSCAFT00845001696
RefSeq Acc Id: ENSCAFP00845001331   ⟸   ENSCAFT00845001686
RefSeq Acc Id: ENSCAFP00845001367   ⟸   ENSCAFT00845001729

Promoters
RGD ID:13683067
Promoter ID:EPDNEW_C1137
Type:single initiation site
Name:TTC23L_1
Description:tetratricopeptide repeat domain 23 like
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1473,453,760 - 73,453,820EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000018809 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00040011156 UniProtKB/TrEMBL
  ENSCAFG00845000983 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000029857.5 UniProtKB/TrEMBL
  ENSCAFT00000073650.2 UniProtKB/TrEMBL
  ENSCAFT00000082445.2 UniProtKB/TrEMBL
  ENSCAFT00000086018.2 UniProtKB/TrEMBL
  ENSCAFT00040020687.1 UniProtKB/TrEMBL
  ENSCAFT00040020725.1 UniProtKB/TrEMBL
  ENSCAFT00845001686.1 UniProtKB/TrEMBL
  ENSCAFT00845001696.1 UniProtKB/TrEMBL
  ENSCAFT00845001703 ENTREZGENE
  ENSCAFT00845001703.1 UniProtKB/TrEMBL
  ENSCAFT00845001729.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.10 UniProtKB/TrEMBL
InterPro TPR-like_helical_dom_sf UniProtKB/TrEMBL
  TPR_repeat UniProtKB/TrEMBL
  TTC23/TTC23L UniProtKB/TrEMBL
NCBI Gene TTC23L ENTREZGENE
PANTHER PTHR14485 UniProtKB/TrEMBL
  TETRATRICOPEPTIDE REPEAT PROTEIN 23-LIKE UniProtKB/TrEMBL
Pfam TPR_12 UniProtKB/TrEMBL
  TPR_8 UniProtKB/TrEMBL
SMART TPR UniProtKB/TrEMBL
Superfamily-SCOP SSF48452 UniProtKB/TrEMBL
UniProt A0A8C0S9Z4_CANLF UniProtKB/TrEMBL
  A0A8C0SA61_CANLF UniProtKB/TrEMBL
  A0A8I3MD16_CANLF UniProtKB/TrEMBL
  A0A8I3MD82_CANLF UniProtKB/TrEMBL
  A0A8I3MDG5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3MMW8_CANLF UniProtKB/TrEMBL
  A0A8P0SMU2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0T5U4_CANLF UniProtKB/TrEMBL
VGNC ID VGNC:47945 ENTREZGENE