BVES (blood vessel epicardial substance) - Rat Genome Database

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Gene: BVES (blood vessel epicardial substance) Canis lupus familiaris
Analyze
Symbol: BVES
Name: blood vessel epicardial substance
RGD ID: 12245574
Description: ENCODES a protein that exhibits structural molecule activity (inferred); INVOLVED IN hematopoietic progenitor cell differentiation (ortholog); regulation of heart rate (ortholog); regulation of membrane potential (ortholog); ASSOCIATED WITH autosomal recessive limb-girdle muscular dystrophy type 2X (ortholog); limb-girdle muscular dystrophy (ortholog); FOUND IN cell junction (ortholog); membrane (ortholog); plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11262,542,274 - 62,581,110 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1262,545,666 - 62,579,548 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1262,331,453 - 62,369,673 (-)NCBI
ROS_Cfam_1.01263,393,637 - 63,432,405 (-)NCBI
UMICH_Zoey_3.11262,748,894 - 62,787,110 (-)NCBI
UNSW_CanFamBas_1.01262,590,058 - 62,628,349 (-)NCBI
UU_Cfam_GSD_1.01262,868,831 - 62,907,346 (-)NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References

Genomics

Comparative Map Data
BVES
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11262,542,274 - 62,581,110 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1262,545,666 - 62,579,548 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1262,331,453 - 62,369,673 (-)NCBI
ROS_Cfam_1.01263,393,637 - 63,432,405 (-)NCBI
UMICH_Zoey_3.11262,748,894 - 62,787,110 (-)NCBI
UNSW_CanFamBas_1.01262,590,058 - 62,628,349 (-)NCBI
UU_Cfam_GSD_1.01262,868,831 - 62,907,346 (-)NCBI
BVES
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl6105,096,822 - 105,137,157 (-)EnsemblGRCh38hg38GRCh38
GRCh386105,096,822 - 105,137,157 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh376105,544,697 - 105,585,032 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 366105,651,390 - 105,691,236 (-)NCBINCBI36hg18NCBI36
Build 346105,651,393 - 105,690,914NCBI
Celera6106,167,189 - 106,206,693 (-)NCBI
Cytogenetic Map6q21NCBI
HuRef6102,987,978 - 103,028,002 (-)NCBIHuRef
CHM1_16105,806,724 - 105,846,753 (-)NCBICHM1_1
Bves
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391045,211,783 - 45,248,580 (+)NCBIGRCm39mm39
GRCm39 Ensembl1045,211,868 - 45,248,575 (+)Ensembl
GRCm381045,335,735 - 45,372,484 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1045,335,772 - 45,372,479 (+)EnsemblGRCm38mm10GRCm38
MGSCv371045,055,568 - 45,089,514 (+)NCBIGRCm37mm9NCBIm37
MGSCv361045,024,177 - 45,058,123 (+)NCBImm8
Celera1046,209,822 - 46,242,144 (+)NCBICelera
Cytogenetic Map10B2NCBI
cM Map1023.47NCBI
Bves
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.22048,819,241 - 48,860,282 (+)NCBI
Rnor_6.0 Ensembl2050,439,883 - 50,474,678 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.02050,439,885 - 50,474,678 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.02052,052,628 - 52,086,539 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42049,671,174 - 49,671,683 (+)NCBIRGSC3.4rn4RGSC3.4
Celera2051,164,981 - 51,200,377 (-)NCBICelera
Cytogenetic Map20q13NCBI
Bves
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541130,517,875 - 30,551,335 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541130,517,917 - 30,548,424 (-)NCBIChiLan1.0ChiLan1.0
BVES
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.16106,784,465 - 106,822,050 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6106,787,615 - 106,822,050 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v06102,915,148 - 102,951,141 (-)NCBIMhudiblu_PPA_v0panPan3
Bves
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494697,512,420 - 97,548,660 (-)NCBI
SpeTri2.0NW_0049365641,791,733 - 1,823,421 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BVES
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl171,314,274 - 71,360,176 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1171,316,354 - 71,360,255 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2180,636,881 - 80,681,079 (-)NCBISscrofa10.2Sscrofa10.2susScr3
BVES
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11368,668,248 - 68,704,661 (+)NCBI
ChlSab1.1 Ensembl1368,668,321 - 68,707,885 (+)Ensembl
Bves
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624952326,812 - 360,790 (-)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 4 5 3 1 6 3 4
Low 1 10 5 6 9 5 6
Below cutoff 9 6 6 8 1

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005627668 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005627669 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022426410 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038492522 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038492523 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038492524 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038492525 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038492526 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038554826 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038554827 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038554828 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038554829 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038554830 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038618702 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038618703 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038618704 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038618705 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038618706 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038684263 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038684264 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038684265 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038684266 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038684268 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038685518 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_539065 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000012 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000127 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000012 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000357 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000012 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCAFT00000005798   ⟹   ENSCAFP00000005369
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1262,545,666 - 62,579,548 (-)Ensembl
RefSeq Acc Id: XM_005627668   ⟹   XP_005627725
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11262,542,274 - 62,579,413 (-)NCBI
Dog10K_Boxer_Tasha1262,331,453 - 62,368,271 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005627669   ⟹   XP_005627726
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11262,542,274 - 62,578,794 (-)NCBI
Dog10K_Boxer_Tasha1262,331,453 - 62,367,801 (-)NCBI
Sequence:
RefSeq Acc Id: XM_022426410   ⟹   XP_022282118
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11262,542,274 - 62,580,946 (-)NCBI
Dog10K_Boxer_Tasha1262,331,453 - 62,369,100 (-)NCBI
Sequence:
RefSeq Acc Id: XM_038492522   ⟹   XP_038348450
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11262,748,894 - 62,785,724 (-)NCBI
RefSeq Acc Id: XM_038492523   ⟹   XP_038348451
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11262,748,894 - 62,787,110 (-)NCBI
RefSeq Acc Id: XM_038492524   ⟹   XP_038348452
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11262,748,894 - 62,786,721 (-)NCBI
RefSeq Acc Id: XM_038492525   ⟹   XP_038348453
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11262,748,894 - 62,786,539 (-)NCBI
RefSeq Acc Id: XM_038492526   ⟹   XP_038348454
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11262,748,894 - 62,785,256 (-)NCBI
RefSeq Acc Id: XM_038554826   ⟹   XP_038410754
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01262,868,831 - 62,905,925 (-)NCBI
RefSeq Acc Id: XM_038554827   ⟹   XP_038410755
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01262,868,831 - 62,907,346 (-)NCBI
RefSeq Acc Id: XM_038554828   ⟹   XP_038410756
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01262,868,831 - 62,906,954 (-)NCBI
RefSeq Acc Id: XM_038554829   ⟹   XP_038410757
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01262,868,831 - 62,906,772 (-)NCBI
RefSeq Acc Id: XM_038554830   ⟹   XP_038410758
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01262,868,831 - 62,905,450 (-)NCBI
RefSeq Acc Id: XM_038618702   ⟹   XP_038474630
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01262,590,058 - 62,626,892 (-)NCBI
RefSeq Acc Id: XM_038618703   ⟹   XP_038474631
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01262,590,058 - 62,628,349 (-)NCBI
RefSeq Acc Id: XM_038618704   ⟹   XP_038474632
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01262,590,058 - 62,627,966 (-)NCBI
RefSeq Acc Id: XM_038618705   ⟹   XP_038474633
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01262,590,058 - 62,627,785 (-)NCBI
RefSeq Acc Id: XM_038618706   ⟹   XP_038474634
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01262,590,058 - 62,626,430 (-)NCBI
RefSeq Acc Id: XM_038684263   ⟹   XP_038540191
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01263,393,637 - 63,430,692 (-)NCBI
RefSeq Acc Id: XM_038684264   ⟹   XP_038540192
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01263,393,637 - 63,432,405 (-)NCBI
RefSeq Acc Id: XM_038684265   ⟹   XP_038540193
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01263,393,637 - 63,432,039 (-)NCBI
RefSeq Acc Id: XM_038684266   ⟹   XP_038540194
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01263,393,637 - 63,431,857 (-)NCBI
RefSeq Acc Id: XM_038684268   ⟹   XP_038540196
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01263,393,637 - 63,430,194 (-)NCBI
RefSeq Acc Id: XM_038685518   ⟹   XP_038541446
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha1262,331,453 - 62,369,673 (-)NCBI
RefSeq Acc Id: XM_539065   ⟹   XP_539065
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11262,542,274 - 62,581,110 (-)NCBI
Dog10K_Boxer_Tasha1262,331,453 - 62,369,282 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: XP_539065   ⟸   XM_539065
- Sequence:
RefSeq Acc Id: XP_005627725   ⟸   XM_005627668
- Sequence:
RefSeq Acc Id: XP_005627726   ⟸   XM_005627669
- Sequence:
RefSeq Acc Id: XP_022282118   ⟸   XM_022426410
- Sequence:
RefSeq Acc Id: ENSCAFP00000005369   ⟸   ENSCAFT00000005798
RefSeq Acc Id: XP_038348451   ⟸   XM_038492523
RefSeq Acc Id: XP_038348452   ⟸   XM_038492524
RefSeq Acc Id: XP_038348453   ⟸   XM_038492525
RefSeq Acc Id: XP_038348450   ⟸   XM_038492522
RefSeq Acc Id: XP_038348454   ⟸   XM_038492526
RefSeq Acc Id: XP_038474631   ⟸   XM_038618703
RefSeq Acc Id: XP_038474632   ⟸   XM_038618704
RefSeq Acc Id: XP_038474633   ⟸   XM_038618705
RefSeq Acc Id: XP_038474630   ⟸   XM_038618702
RefSeq Acc Id: XP_038474634   ⟸   XM_038618706
RefSeq Acc Id: XP_038540192   ⟸   XM_038684264
RefSeq Acc Id: XP_038540193   ⟸   XM_038684265
RefSeq Acc Id: XP_038540194   ⟸   XM_038684266
RefSeq Acc Id: XP_038540191   ⟸   XM_038684263
RefSeq Acc Id: XP_038540196   ⟸   XM_038684268
RefSeq Acc Id: XP_038541446   ⟸   XM_038685518
RefSeq Acc Id: XP_038410755   ⟸   XM_038554827
RefSeq Acc Id: XP_038410756   ⟸   XM_038554828
RefSeq Acc Id: XP_038410757   ⟸   XM_038554829
RefSeq Acc Id: XP_038410754   ⟸   XM_038554826
RefSeq Acc Id: XP_038410758   ⟸   XM_038554830


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000003600 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSCAFP00000005369 UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000005798 UniProtKB/TrEMBL
Gene3D-CATH 2.60.120.10 UniProtKB/TrEMBL
InterPro cNMP-bd-like UniProtKB/TrEMBL
  Popeye_prot UniProtKB/TrEMBL
  RmlC-like_jellyroll UniProtKB/TrEMBL
KEGG Report cfa:481944 UniProtKB/TrEMBL
NCBI Gene BVES ENTREZGENE
PANTHER PTHR12101 UniProtKB/TrEMBL
Pfam Popeye UniProtKB/TrEMBL
Superfamily-SCOP SSF51206 UniProtKB/TrEMBL
UniProt E2R5H9_CANLF UniProtKB/TrEMBL
VGNC ID VGNC:38569 ENTREZGENE