RNF213 (ring finger protein 213) - Rat Genome Database

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Gene: RNF213 (ring finger protein 213) Canis lupus familiaris
Analyze
Symbol: RNF213
Name: ring finger protein 213
RGD ID: 12243107
Description: ENCODES a protein that exhibits ATP hydrolysis activity (ortholog); INVOLVED IN angiogenesis (ortholog); protein autoubiquitination (ortholog); protein homooligomerization (ortholog); ASSOCIATED WITH anaplastic ependymoma (ortholog); Aortic Coarctation (ortholog); genetic disease (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleolus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: E3 ubiquitin-protein ligase RNF213; protein ALO17
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.191,439,061 - 1,506,658 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl91,440,364 - 1,506,951 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha92,056,478 - 2,154,125 (-)NCBI
ROS_Cfam_1.092,048,400 - 2,146,573 (-)NCBI
UMICH_Zoey_3.192,071,964 - 2,170,024 (-)NCBI
UNSW_CanFamBas_1.092,197,505 - 2,295,458 (-)NCBI
UU_Cfam_GSD_1.092,278,468 - 2,376,800 (-)NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (ISO)
cytosol  (IBA,ISO)
nucleolus  (IBA,ISO)

Molecular Function

References

Genomics

Comparative Map Data
RNF213
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.191,439,061 - 1,506,658 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl91,440,364 - 1,506,951 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha92,056,478 - 2,154,125 (-)NCBI
ROS_Cfam_1.092,048,400 - 2,146,573 (-)NCBI
UMICH_Zoey_3.192,071,964 - 2,170,024 (-)NCBI
UNSW_CanFamBas_1.092,197,505 - 2,295,458 (-)NCBI
UU_Cfam_GSD_1.092,278,468 - 2,376,800 (-)NCBI
RNF213
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1780,260,866 - 80,398,786 (+)EnsemblGRCh38hg38GRCh38
GRCh381780,260,820 - 80,398,794 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371778,234,651 - 78,372,594 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361775,928,321 - 75,984,681 (+)NCBINCBI36hg18NCBI36
Celera1774,864,699 - 74,998,227 (+)NCBI
Cytogenetic Map17q25.3NCBI
HuRef1773,676,973 - 73,810,563 (+)NCBIHuRef
CHM1_11778,320,628 - 78,458,825 (+)NCBICHM1_1
Rnf213
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911119,280,778 - 119,378,245 (+)NCBIGRCm39mm39
GRCm39 Ensembl11119,283,926 - 119,378,244 (+)Ensembl
GRCm3811119,389,950 - 119,487,418 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11119,393,100 - 119,487,418 (+)EnsemblGRCm38mm10GRCm38
MGSCv3711119,254,414 - 119,348,739 (+)NCBIGRCm37mm9NCBIm37
MGSCv3611119,342,115 - 119,348,729 (+)NCBImm8
Celera11131,141,037 - 131,235,450 (+)NCBICelera
Cytogenetic Map11E2NCBI
cM Map1183.48NCBI
Rnf213
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.210104,656,329 - 104,755,669 (+)NCBI
Rnor_6.0 Ensembl10108,527,740 - 108,624,688 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.010108,527,351 - 108,626,372 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.010108,134,305 - 108,230,724 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.410108,765,490 - 108,862,935 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.110108,778,807 - 108,875,755 (+)NCBI
Celera10103,204,438 - 103,300,991 (+)NCBICelera
Cytogenetic Map10q32.3NCBI
Rnf213
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555062,499,770 - 2,596,989 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555062,498,339 - 2,598,363 (-)NCBIChiLan1.0ChiLan1.0
RNF213
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11780,421,373 - 80,556,570 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1780,421,373 - 80,556,570 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01774,688,130 - 74,823,973 (+)NCBIMhudiblu_PPA_v0panPan3
Rnf213
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244056022,082,963 - 2,171,115 (-)NCBI
SpeTri2.0NW_0049365944,241,006 - 4,331,841 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RNF213
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11672,241,519 - 72,370,710 (+)NCBI
ChlSab1.1 Ensembl1672,244,245 - 72,369,859 (+)Ensembl
Rnf213
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248019,472,891 - 9,574,511 (+)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 3 21 6 6 6 4 6 10 6
Low 2 5 1 2 5 6 8
Below cutoff 1

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_014116240 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_014116241 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022422636 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038484714 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038484715 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038484716 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038484717 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038546362 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038546363 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038546364 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038546365 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038610369 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038610370 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038610371 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038610372 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038623658 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038623669 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038623679 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038623690 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038675485 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038675486 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038675487 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038675488 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005330373 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005364131 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005398561 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005405425 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005431855 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000090 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000103 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000313 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCAFT00000009155   ⟹   ENSCAFP00000008493
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl91,440,364 - 1,506,951 (-)Ensembl
RefSeq Acc Id: XM_014116240   ⟹   XP_013971715
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.191,439,061 - 1,506,657 (-)NCBI
Sequence:
RefSeq Acc Id: XM_014116241   ⟹   XP_013971716
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.191,439,061 - 1,506,657 (-)NCBI
Sequence:
RefSeq Acc Id: XM_022422636   ⟹   XP_022278344
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.191,445,391 - 1,506,658 (-)NCBI
Sequence:
RefSeq Acc Id: XM_038484714   ⟹   XP_038340642
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.192,071,964 - 2,168,994 (-)NCBI
RefSeq Acc Id: XM_038484715   ⟹   XP_038340643
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.192,071,964 - 2,168,994 (-)NCBI
RefSeq Acc Id: XM_038484716   ⟹   XP_038340644
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.192,071,964 - 2,170,006 (-)NCBI
RefSeq Acc Id: XM_038484717   ⟹   XP_038340645
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.192,094,371 - 2,170,024 (-)NCBI
RefSeq Acc Id: XM_038546362   ⟹   XP_038402290
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.092,278,468 - 2,375,768 (-)NCBI
RefSeq Acc Id: XM_038546363   ⟹   XP_038402291
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.092,278,468 - 2,375,768 (-)NCBI
RefSeq Acc Id: XM_038546364   ⟹   XP_038402292
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.092,278,468 - 2,376,782 (-)NCBI
RefSeq Acc Id: XM_038546365   ⟹   XP_038402293
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.092,300,873 - 2,376,800 (-)NCBI
RefSeq Acc Id: XM_038610369   ⟹   XP_038466297
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.092,197,505 - 2,294,489 (-)NCBI
RefSeq Acc Id: XM_038610370   ⟹   XP_038466298
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.092,197,505 - 2,294,489 (-)NCBI
RefSeq Acc Id: XM_038610371   ⟹   XP_038466299
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.092,197,505 - 2,295,440 (-)NCBI
RefSeq Acc Id: XM_038610372   ⟹   XP_038466300
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.092,219,904 - 2,295,458 (-)NCBI
RefSeq Acc Id: XM_038623658   ⟹   XP_038479586
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha92,056,478 - 2,153,093 (-)NCBI
RefSeq Acc Id: XM_038623669   ⟹   XP_038479597
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha92,056,478 - 2,153,093 (-)NCBI
RefSeq Acc Id: XM_038623679   ⟹   XP_038479607
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha92,056,478 - 2,154,107 (-)NCBI
RefSeq Acc Id: XM_038623690   ⟹   XP_038479618
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha92,078,629 - 2,154,125 (-)NCBI
RefSeq Acc Id: XM_038675485   ⟹   XP_038531413
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.092,048,400 - 2,145,542 (-)NCBI
RefSeq Acc Id: XM_038675486   ⟹   XP_038531414
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.092,048,400 - 2,145,542 (-)NCBI
RefSeq Acc Id: XM_038675487   ⟹   XP_038531415
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.092,048,400 - 2,146,555 (-)NCBI
RefSeq Acc Id: XM_038675488   ⟹   XP_038531416
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.092,070,826 - 2,146,573 (-)NCBI
RefSeq Acc Id: XR_005330373
RefSeq Status:
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.192,078,793 - 2,170,017 (-)NCBI
RefSeq Acc Id: XR_005364131
RefSeq Status:
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.092,285,290 - 2,376,793 (-)NCBI
RefSeq Acc Id: XR_005398561
RefSeq Status:
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.092,204,334 - 2,295,451 (-)NCBI
RefSeq Acc Id: XR_005405425
RefSeq Status:
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha92,063,308 - 2,154,118 (-)NCBI
RefSeq Acc Id: XR_005431855
RefSeq Status:
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.092,055,230 - 2,146,566 (-)NCBI
Reference Sequences
RefSeq Acc Id: XP_013971716   ⟸   XM_014116241
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_013971715   ⟸   XM_014116240
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_022278344   ⟸   XM_022422636
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: ENSCAFP00000008493   ⟸   ENSCAFT00000009155
RefSeq Acc Id: XP_038340644   ⟸   XM_038484716
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038340643   ⟸   XM_038484715
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038340642   ⟸   XM_038484714
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038340645   ⟸   XM_038484717
- Peptide Label: isoform X8
RefSeq Acc Id: XP_038466299   ⟸   XM_038610371
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038466298   ⟸   XM_038610370
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038466297   ⟸   XM_038610369
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038466300   ⟸   XM_038610372
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038531415   ⟸   XM_038675487
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038531414   ⟸   XM_038675486
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038531413   ⟸   XM_038675485
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038531416   ⟸   XM_038675488
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038479607   ⟸   XM_038623679
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038479597   ⟸   XM_038623669
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038479586   ⟸   XM_038623658
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038479618   ⟸   XM_038623690
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038402292   ⟸   XM_038546364
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038402291   ⟸   XM_038546363
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038402290   ⟸   XM_038546362
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038402293   ⟸   XM_038546365
- Peptide Label: isoform X4
Protein Domains
RING-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000005675 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSCAFP00000008493 UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000009155 UniProtKB/TrEMBL
Gene3D-CATH 3.30.40.10 UniProtKB/TrEMBL
InterPro AAA+_ATPase UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
  RNF213 UniProtKB/TrEMBL
  Znf_C3HC4_RING-type UniProtKB/TrEMBL
  Znf_RING UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/TrEMBL
  Znf_RING_CS UniProtKB/TrEMBL
NCBI Gene RNF213 ENTREZGENE
PANTHER PTHR22605 UniProtKB/TrEMBL
Pfam zf-C3HC4 UniProtKB/TrEMBL
PROSITE ZF_RING_1 UniProtKB/TrEMBL
  ZF_RING_2 UniProtKB/TrEMBL
SMART AAA UniProtKB/TrEMBL
  RING UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt E2R819_CANLF UniProtKB/TrEMBL
VGNC ID VGNC:45657 ENTREZGENE