PGK1 (phosphoglycerate kinase 1) - Rat Genome Database

Name: PGK1
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Advanced Search (OLGA)

Gene: PGK1 (phosphoglycerate kinase 1) Canis lupus familiaris

Analyze

Symbol:

PGK1

Name:

phosphoglycerate kinase 1

RGD ID:

12242498

Description:

ENCODES a protein that exhibits ADP binding (ortholog); ATP binding (ortholog); phosphoglycerate kinase activity (ortholog); INVOLVED IN gluconeogenesis (ortholog); glycolytic process (ortholog); negative regulation of acetyl-CoA biosynthetic process from pyruvate (ortholog); PARTICIPATES IN gluconeogenesis pathway; glycolysis pathway; hypoxia inducible factor pathway; ASSOCIATED WITH alpha thalassemia-X-linked intellectual disability syndrome (ortholog); autistic disorder (ortholog); autosomal hemophilia A (ortholog); FOUND IN cytosol (ortholog); mitochondrial matrix (ortholog)

Type:

protein-coding

RefSeq Status:

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	PGK1 (phosphoglycerate kinase 1)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Pgk1 (phosphoglycerate kinase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Pgk1 (phosphoglycerate kinase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Pgk1 (phosphoglycerate kinase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	PGK1 (phosphoglycerate kinase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Pgk1 (phosphoglycerate kinase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	PGK1 (phosphoglycerate kinase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	PGK1 (phosphoglycerate kinase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Pgk1 (phosphoglycerate kinase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	PGK2 (phosphoglycerate kinase 2)	HGNC	OrthoDB

Latest Assembly:

CanFam3.1 - Dog CanFam3.1 Assembly

Position:

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	X	60,374,743 - 60,396,244 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	X	60,374,754 - 60,423,947 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	X	51,387,842 - 51,409,348 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	X	61,613,473 - 61,634,977 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	X	61,613,477 - 61,690,699 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	X	59,319,607 - 59,341,115 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	X	60,929,381 - 60,951,098 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	X	60,517,684 - 60,539,186 (+)	NCBI		UU_Cfam_GSD_1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

alpha thalassemia-X-linked intellectual disability syndrome (ISO)

autistic disorder (ISO)

autosomal hemophilia A (ISO)

factor VIII deficiency (ISO)

Generalized Epilepsy (ISO)

genetic disease (ISO)

hemolytic anemia (ISO)

hepatocellular carcinoma (ISO)

Menkes disease (ISO)

phosphoglycerate kinase 1 deficiency (ISO)

renal cell carcinoma (ISO)

syndromic X-linked intellectual disability Lubs type (ISO)

X-linked immunodeficiency with magnesium defect, Epstein-Barr virus infection, and neoplasia (ISO)

Young Syndrome (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

canonical glycolysis (IEA)

cellular response to hypoxia (IEA)

epithelial cell differentiation (IEA)

gluconeogenesis (IEA,ISO)

glycolytic process (IEA,ISO)

negative regulation of acetyl-CoA biosynthetic process from pyruvate (ISO)

negative regulation of angiogenesis (IEA)

plasminogen activation (IEA)

Cellular Component

cytoplasm (IEA)

cytosol (IEA,ISO)

extracellular space (IEA)

membrane raft (IEA)

mitochondrial matrix (ISO)

Molecular Function

ADP binding (ISO)

ATP binding (IEA,ISO)

kinase activity (IEA)

phosphoglycerate kinase activity (IEA,ISO)

protein binding (ISO)

protein serine/threonine kinase activity (ISO)

protein-disulfide reductase (NAD(P)H) activity (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

gluconeogenesis pathway (ISO)

glycolysis pathway (ISO)

hypoxia inducible factor pathway (ISO)

lamivudine pharmacokinetics pathway (ISO)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

PGK1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	X	60,374,743 - 60,396,244 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	X	60,374,754 - 60,423,947 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	X	51,387,842 - 51,409,348 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	X	61,613,473 - 61,634,977 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	X	61,613,477 - 61,690,699 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	X	59,319,607 - 59,341,115 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	X	60,929,381 - 60,951,098 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	X	60,517,684 - 60,539,186 (+)	NCBI		UU_Cfam_GSD_1.0

PGK1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	X	78,104,248 - 78,129,295 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	X	77,910,739 - 78,129,295 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	X	77,359,745 - 77,384,792 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	X	77,246,425 - 77,268,980 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	X	77,165,913 - 77,188,467	NCBI
Celera	X	77,600,747 - 77,623,405 (+)	NCBI		Celera
Cytogenetic Map	X	q21.1	NCBI
HuRef	X	70,945,945 - 70,968,603 (+)	NCBI		HuRef
CHM1_1	X	77,252,363 - 77,275,021 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	X	76,539,329 - 76,564,376 (+)	NCBI		T2T-CHM13v2.0

Pgk1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	X	105,230,706 - 105,247,305 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	X	105,230,706 - 105,247,305 (+)	Ensembl		GRCm39 Ensembl
GRCm38	X	106,187,100 - 106,203,699 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	X	106,187,100 - 106,203,699 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	X	103,382,463 - 103,399,038 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	X	102,389,843 - 102,406,418 (+)	NCBI		MGSCv36	mm8
Celera	X	93,040,533 - 93,057,028 (+)	NCBI		Celera
Cytogenetic Map	X	D	NCBI
cM Map	X	47.36	NCBI

Pgk1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	X	75,336,988 - 75,352,962 (+)	NCBI		GRCr8
mRatBN7.2	X	71,271,454 - 71,287,429 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	X	71,271,440 - 71,287,418 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	X	72,780,371 - 72,796,345 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	X	76,280,383 - 76,296,357 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	X	73,843,195 - 73,859,169 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	X	77,263,399 - 77,279,373 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	X	77,263,359 - 77,279,367 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	X	56,383,459 - 56,399,433 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	X	94,324,219 - 94,340,193 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	X	94,397,574 - 94,413,625 (+)	NCBI
Celera	X	72,583,654 - 72,599,628 (+)	NCBI		Celera
Cytogenetic Map	X	q22	NCBI

Pgk1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955557	1,566,534 - 1,584,799 (+)	NCBI	ChiLan1.0	ChiLan1.0

PGK1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	X	77,679,278 - 77,701,483 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	X	77,682,484 - 77,708,088 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	X	67,280,269 - 67,302,307 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	X	77,391,639 - 77,413,786 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	X	77,391,805 - 77,414,459 (+)	Ensembl	panpan1.1		panPan2

Pgk1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	X	53,965,864 - 53,989,650 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936547	286,267 - 310,062 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936547	286,267 - 310,062 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PGK1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	X	62,187,434 - 62,210,705 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	X	62,187,472 - 62,210,321 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	X	71,339,754 - 71,351,768 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3
Pig Cytomap	X	q1.2	NCBI

PGK1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	X	67,072,029 - 67,093,881 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666067	14,418,994 - 14,440,951 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Pgk1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624836	2,653,474 - 2,676,766 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624836	2,657,320 - 2,676,124 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in PGK1
101 total Variants

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

adipose tissue	alimentary part of gastrointestinal system	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	reproductive system	respiratory system
6	5	5	23	22	16	6	6	6	6	33	22	12	14	10

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_038450348	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038523814	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038587778	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038652304	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_844899	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AAEX04000146	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAHUQ010000389	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAQRD010000110	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAUVH010000175	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	REHQ01000039	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCAFT00000027362 ⟹ ENSCAFP00000025449

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	X	60,374,754 - 60,395,960 (+)	Ensembl

Ensembl Acc Id:

ENSCAFT00000083119 ⟹ ENSCAFP00000064249

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	X	60,374,754 - 60,423,947 (+)	Ensembl

Ensembl Acc Id:

ENSCAFT00845036592 ⟹ ENSCAFP00845028635

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	X	61,613,477 - 61,634,973 (+)	Ensembl

Ensembl Acc Id:

ENSCAFT00845036661 ⟹ ENSCAFP00845028696

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	X	61,613,512 - 61,690,699 (+)	Ensembl

RefSeq Acc Id:

XM_038450348 ⟹ XP_038306276

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	X	61,613,473 - 61,634,977 (+)	NCBI

RefSeq Acc Id:

XM_038523814 ⟹ XP_038379742

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	X	59,319,607 - 59,341,115 (+)	NCBI

RefSeq Acc Id:

XM_038587778 ⟹ XP_038443706

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	X	60,517,684 - 60,539,186 (+)	NCBI

RefSeq Acc Id:

XM_038652304 ⟹ XP_038508232

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	X	60,929,381 - 60,951,098 (+)	NCBI

RefSeq Acc Id:

XM_844899 ⟹ XP_849992

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	X	60,374,743 - 60,396,244 (+)	NCBI
Dog10K_Boxer_Tasha	X	51,387,842 - 51,409,348 (+)	NCBI

Sequence:

show sequence

GGGCGGGGTGGCCCGGGCCGCTCTCTACATTCCGCACGAGGTTGTAGCGCACGCAGGCGGCTTT
CTTCTCCGCTGTTTAAGCTCTCAGCCTCGCAACCCTTCTATTGCCAAGATGTCGCTTTCTAACA
AGCTGACTCTGGACAAGCTCGACGTGAAGGGCAAGCGGGTCGTCATGAGAGTGGACTTCAACGT
TCCTATGAAGAACAACCAGATAACAAACAACCAGAGAATCAAGGCTGCCATCCCAAGTATCAAA
TTCTGCTTGGACAATGGAGCCAAGTCAGTTGTTCTTATGAGCCATCTGGGCCGGCCTGATGGTG
TCCCCATGCCAGACAAGTATTCTTTGGGGCCAGTTGCTGTAGAACTTAAGTCTCTGCTGGGCAA
GGATGTTTTATTCTTAAAGGACTGTGTGGGCCAAGAAGTGGAGAAAGCTTGTGCTGACCCAGCT
GCTGGGTCTGTCATCCTGCTGGAGAACCTTCGCTTTCATGTGGAGGAAGAAGGGAAGGGAAAAG
ATGCTTCTGGGAATAAGGTTAAAGCTGAGTCAGCCAAAATAGAAGCCTTCCGAGCTTCACTTTC
CAAGCTAGGAGATGTCTATGTCAATGATGCTTTTGGCACTGCTCACCGAGCCCACAGCTCCATG
GTGGGAGTCAGTCTGCCACAGAAGGCCGGAGGTTTCTTGATGAAGAAGGAGCTGAACTACTTTG
CCAAGGCCTTGGAATGCCCAGAGCGACCCTTCCTGGCCATCCTGGGCGGAGCTAAAGTTGCAGA
CAAGATCCAGCTGATCAGTAATATGCTGGACAAAGTCAATGAGATGATTATTGGTGGTGGAATG
GCTTTTACCTTCCTGAAGGTGCTCAACAACATGGAGATTGGCACTTCTCTGTTTGATGAAGAGG
GAGCCAAGATCGTCAAAGACCTGATGTCCAAAGCTGAGAAGAATGGTGTGAAAATTACCTTGCC
AGTTGACTTTGTCACTGCTGAAAAGTTTGATGAGCATGCCAAGACTGGCCAAGCCACTGTGGCC
TCTGGCATACCTGCTGGCTGGATGGGCTTGGACTGTGGTCCTGAGAGCAGCAAGAAATATGCTG
AGGCAGTTGCTCGGGCTAAGCAGATCGTGTGGAATGGACCTGTGGGTGTATTTGAATGGGAAGC
TTTTGCCCAAGGAACCAAAGCCCTCATGGATGAGGTGGTGAAAGCCACTGCTAGGGGCTGCATC
ACCATCATAGGTGGTGGAGACACTGCCACTTGCTGTGCCAAATGGAACACAGAGGATAAAGTCA
GCCATGTGAGCACTGGGGGTGGTGCGAGTTTAGAACTCTTGGAAGGTAAAGTCCTTCCTGGGGT
GGATGCTCTCAGCAGTGTTTAGTACTTTCCTGCCTTTTGGTTCCTGTGCACAGTCCCTAAGTCA
ACCTAGCACTTGCTGCATCTCTCCTTGGCATTAGCTAAAATCTTCCCTCACGTCAAGATTCAGC
TAGTGGCCAAGAGATGCAGTACCAGGAACCCTTAAACAGGCGCACAGCATCTCAGTTCCTCTTT
ACTGCACCCTGGATTTGCCTACATTCTTCAGGATCCCATTTGAATTTCTTAGTGACTAAACCAT
TGTGCATTCTAGAGTGCATATATTTATATTTTGCCTGTTAGAAGAAAATGAGCTGTGTTGGCTT
TTCTTTTTGAAGTAGCTTATTCTGATTATAGCTGTGTCATTGTTTCACTACTCAGTATGGAAAT
AAGATGAAATTCCAATTGTAGGTAGGTAGGAAGACAAAGTTGGTGATCTATTAAATCAATAAAA
GTATCCACTGAAACGGA

hide sequence

Protein Sequences


Protein RefSeqs	XP_038306276	(Get FASTA)	NCBI Sequence Viewer
	XP_038379742	(Get FASTA)	NCBI Sequence Viewer
	XP_038443706	(Get FASTA)	NCBI Sequence Viewer
	XP_038508232	(Get FASTA)	NCBI Sequence Viewer
	XP_849992	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCAFP00000025449.3
	ENSCAFP00030016088.1
	ENSCAFP00030016172.1
	ENSCAFP00040027530.1
	ENSCAFP00040027620.1
	ENSCAFP00040027705.1
	ENSCAFP00040027735.1
	ENSCAFP00845028635.1
	ENSCAFP00845028696
	ENSCAFP00845028696.1

RefSeq Acc Id:

XP_849992 ⟸ XM_844899

- UniProtKB:

A0A8C0SZN8 (UniProtKB/TrEMBL), A0A8C0LKW3 (UniProtKB/TrEMBL), A0A8I3P9Y9 (UniProtKB/TrEMBL), A0A8I3PEK9 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSLSNKLTLDKLDVKGKRVVMRVDFNVPMKNNQITNNQRIKAAIPSIKFCLDNGAKSVVLMSHL
GRPDGVPMPDKYSLGPVAVELKSLLGKDVLFLKDCVGQEVEKACADPAAGSVILLENLRFHVEE
EGKGKDASGNKVKAESAKIEAFRASLSKLGDVYVNDAFGTAHRAHSSMVGVSLPQKAGGFLMKK
ELNYFAKALECPERPFLAILGGAKVADKIQLISNMLDKVNEMIIGGGMAFTFLKVLNNMEIGTS
LFDEEGAKIVKDLMSKAEKNGVKITLPVDFVTAEKFDEHAKTGQATVASGIPAGWMGLDCGPES
SKKYAEAVARAKQIVWNGPVGVFEWEAFAQGTKALMDEVVKATARGCITIIGGGDTATCCAKWN
TEDKVSHVSTGGGASLELLEGKVLPGVDALSSV

hide sequence

Ensembl Acc Id:

ENSCAFP00000064249 ⟸ ENSCAFT00000083119

Ensembl Acc Id:

ENSCAFP00000025449 ⟸ ENSCAFT00000027362

RefSeq Acc Id:

XP_038379742 ⟸ XM_038523814

RefSeq Acc Id:

XP_038508232 ⟸ XM_038652304

RefSeq Acc Id:	XP_038306276 ⟸ XM_038450348
- UniProtKB:	A0A8C0SZN8 (UniProtKB/TrEMBL), A0A8C0LKW3 (UniProtKB/TrEMBL), A0A8I3P9Y9 (UniProtKB/TrEMBL), A0A8I3PEK9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038443706 ⟸ XM_038587778
- UniProtKB:	A0A8C0LKW3 (UniProtKB/TrEMBL), A0A8C0SZN8 (UniProtKB/TrEMBL), A0A8I3P9Y9 (UniProtKB/TrEMBL), A0A8I3PEK9 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSCAFP00845028696 ⟸ ENSCAFT00845036661

Ensembl Acc Id:

ENSCAFP00845028635 ⟸ ENSCAFT00845036592

Promoters

RGD ID:

13689367

Promoter ID:

EPDNEW_C7435

Type:

initiation region

Name:

PGK1_1

Description:

phosphoglycerate kinase 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	X	60,374,771 - 60,374,831	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCAFG00000017270	Ensembl, UniProtKB/TrEMBL
	ENSCAFG00030009967	UniProtKB/TrEMBL
	ENSCAFG00040017144	UniProtKB/TrEMBL
	ENSCAFG00845020758	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCAFT00000027362.5	UniProtKB/TrEMBL
	ENSCAFT00030018426.1	UniProtKB/TrEMBL
	ENSCAFT00030018531.1	UniProtKB/TrEMBL
	ENSCAFT00040031663.1	UniProtKB/TrEMBL
	ENSCAFT00040031761.1	UniProtKB/TrEMBL
	ENSCAFT00040031855.1	UniProtKB/TrEMBL
	ENSCAFT00040031902.1	UniProtKB/TrEMBL
	ENSCAFT00845036592.1	UniProtKB/TrEMBL
	ENSCAFT00845036661	ENTREZGENE
	ENSCAFT00845036661.1	UniProtKB/TrEMBL
Gene3D-CATH	3.40.50.1260	UniProtKB/TrEMBL
InterPro	Phosphoglycerate_kinase	UniProtKB/TrEMBL
	Phosphoglycerate_kinase_CS	UniProtKB/TrEMBL
	Phosphoglycerate_kinase_N	UniProtKB/TrEMBL
	Phosphoglycerate_kinase_sf	UniProtKB/TrEMBL
KEGG Report	cfa:480964	UniProtKB/TrEMBL
NCBI Gene	PGK1	ENTREZGENE
PANTHER	PHOSPHOGLYCERATE KINASE 1	UniProtKB/TrEMBL
	PTHR11406	UniProtKB/TrEMBL
Pfam	PGK	UniProtKB/TrEMBL
PIRSF	Pgk	UniProtKB/TrEMBL
PRINTS	PHGLYCKINASE	UniProtKB/TrEMBL
PROSITE	PGLYCERATE_KINASE	UniProtKB/TrEMBL
Superfamily-SCOP	SSF53748	UniProtKB/TrEMBL
UniProt	A0A8C0LKW3	ENTREZGENE
	A0A8C0MY08_CANLF	UniProtKB/TrEMBL
	A0A8C0SZN8	ENTREZGENE, UniProtKB/TrEMBL
	A0A8C0SZV4_CANLF	UniProtKB/TrEMBL
	A0A8C0Z0D9_CANLF	UniProtKB/TrEMBL
	A0A8C0Z0K4_CANLF	UniProtKB/TrEMBL
	A0A8I3P9Y9	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I3PEK9	ENTREZGENE, UniProtKB/TrEMBL
VGNC ID	VGNC:49941	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

RGD Manual Annotations

Imported Annotations - SMPDB

Imported Annotations - PID (archival)

Send us a Message

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

RGD Manual Annotations

Imported Annotations - SMPDB

Imported Annotations - PID (archival)