ERLEC1 (endoplasmic reticulum lectin 1) - Rat Genome Database

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Gene: ERLEC1 (endoplasmic reticulum lectin 1) Canis lupus familiaris
Analyze
Symbol: ERLEC1
Name: endoplasmic reticulum lectin 1
RGD ID: 12242208
Description: ENCODES a protein that exhibits unfolded protein binding (ortholog); INVOLVED IN negative regulation of retrograde protein transport, ER to cytosol (ortholog); ubiquitin-dependent ERAD pathway (ortholog); ASSOCIATED WITH Chemical and Drug Induced Liver Injury (ortholog); cholestasis (ortholog); Malocclusion, Angle Class III (ortholog); FOUND IN endoplasmic reticulum lumen (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11054,815,592 - 54,845,776 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1054,815,638 - 54,845,080 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1054,767,465 - 54,797,664 (+)NCBI
ROS_Cfam_1.01055,814,249 - 55,845,028 (+)NCBI
UMICH_Zoey_3.11055,507,493 - 55,537,678 (+)NCBI
UNSW_CanFamBas_1.01055,793,731 - 55,824,185 (+)NCBI
UU_Cfam_GSD_1.01056,080,596 - 56,110,787 (+)NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
ERLEC1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11054,815,592 - 54,845,776 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1054,815,638 - 54,845,080 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1054,767,465 - 54,797,664 (+)NCBI
ROS_Cfam_1.01055,814,249 - 55,845,028 (+)NCBI
UMICH_Zoey_3.11055,507,493 - 55,537,678 (+)NCBI
UNSW_CanFamBas_1.01055,793,731 - 55,824,185 (+)NCBI
UU_Cfam_GSD_1.01056,080,596 - 56,110,787 (+)NCBI
ERLEC1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl253,787,044 - 53,818,819 (+)EnsemblGRCh38hg38GRCh38
GRCh38253,787,017 - 53,834,524 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37254,014,181 - 54,045,933 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36253,867,721 - 53,899,437 (+)NCBINCBI36hg18NCBI36
Build 34253,925,867 - 53,957,584NCBI
Celera253,854,922 - 53,887,349 (+)NCBI
Cytogenetic Map2p16.2NCBI
HuRef253,748,407 - 53,780,295 (+)NCBIHuRef
CHM1_1253,945,053 - 53,976,959 (+)NCBICHM1_1
Erlec1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391130,812,794 - 30,904,385 (-)NCBIGRCm39mm39
GRCm39 Ensembl1130,880,774 - 30,904,335 (-)Ensembl
GRCm381130,862,794 - 30,954,386 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1130,930,774 - 30,954,335 (-)EnsemblGRCm38mm10GRCm38
MGSCv371130,829,784 - 30,854,131 (-)NCBIGRCm37mm9NCBIm37
MGSCv361130,831,419 - 30,854,123 (-)NCBImm8
Celera1133,335,160 - 33,359,441 (-)NCBICelera
Cytogenetic Map11A4NCBI
Erlec1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.214104,655,745 - 104,693,508 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl14104,655,673 - 104,693,480 (-)Ensembl
Rnor_6.014115,314,890 - 115,352,871 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl14115,314,890 - 115,352,562 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.014114,972,393 - 115,009,275 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.414112,046,496 - 112,086,271 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.114112,072,200 - 112,112,551 (-)NCBI
Celera14103,493,416 - 103,531,051 (-)NCBICelera
Cytogenetic Map14q22NCBI
Erlec1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544119,535,425 - 19,557,458 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495544119,535,425 - 19,557,960 (+)NCBIChiLan1.0ChiLan1.0
ERLEC1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12A54,842,228 - 54,874,068 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A54,842,228 - 54,874,068 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02A53,930,280 - 53,962,178 (+)NCBIMhudiblu_PPA_v0panPan3
Erlec1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629228,193,321 - 28,219,474 (-)NCBI
SpeTri2.0NW_004936491351,813 - 377,978 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ERLEC1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl387,355,904 - 87,389,814 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1387,362,166 - 87,389,814 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2392,521,490 - 92,549,096 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ERLEC1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11453,150,627 - 53,188,821 (-)NCBI
ChlSab1.1 Ensembl1453,154,556 - 53,188,538 (-)Ensembl
Vero_WHO_p1.0NW_02366604558,516,256 - 58,554,383 (+)NCBI
Erlec1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248337,964,815 - 7,992,277 (+)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 5 5 22 6 6 6 6 6 12 8 10 6
Low
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003431536 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_014117526 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_014117527 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022424729 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038489282 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038489283 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038551254 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038551255 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038615178 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038615179 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038680564 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038680565 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_531822 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000101 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000358 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCAFT00000004328   ⟹   ENSCAFP00000004006
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1054,815,638 - 54,845,080 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000060153   ⟹   ENSCAFP00000051423
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1054,815,638 - 54,845,080 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000080400   ⟹   ENSCAFP00000047945
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1054,815,638 - 54,845,080 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000080728   ⟹   ENSCAFP00000048925
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1054,815,638 - 54,845,080 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000082680   ⟹   ENSCAFP00000061972
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1054,815,638 - 54,845,080 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000088885   ⟹   ENSCAFP00000047976
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1054,815,638 - 54,845,080 (+)Ensembl
RefSeq Acc Id: XM_003431536   ⟹   XP_003431584
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11054,815,593 - 54,845,776 (+)NCBI
Dog10K_Boxer_Tasha1054,767,465 - 54,797,664 (+)NCBI
Sequence:
RefSeq Acc Id: XM_014117526   ⟹   XP_013973001
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11054,815,593 - 54,845,776 (+)NCBI
Sequence:
RefSeq Acc Id: XM_014117527   ⟹   XP_013973002
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11054,815,592 - 54,845,776 (+)NCBI
Sequence:
RefSeq Acc Id: XM_022424729   ⟹   XP_022280437
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11054,815,594 - 54,845,776 (+)NCBI
Sequence:
RefSeq Acc Id: XM_038489282   ⟹   XP_038345210
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11055,507,494 - 55,537,678 (+)NCBI
RefSeq Acc Id: XM_038489283   ⟹   XP_038345211
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11055,507,493 - 55,537,678 (+)NCBI
RefSeq Acc Id: XM_038551254   ⟹   XP_038407182
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01056,080,597 - 56,110,787 (+)NCBI
RefSeq Acc Id: XM_038551255   ⟹   XP_038407183
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01056,080,596 - 56,110,787 (+)NCBI
RefSeq Acc Id: XM_038615178   ⟹   XP_038471106
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01055,793,732 - 55,824,185 (+)NCBI
RefSeq Acc Id: XM_038615179   ⟹   XP_038471107
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01055,793,731 - 55,824,185 (+)NCBI
RefSeq Acc Id: XM_038680564   ⟹   XP_038536492
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01055,814,250 - 55,845,028 (+)NCBI
RefSeq Acc Id: XM_038680565   ⟹   XP_038536493
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01055,814,249 - 55,845,028 (+)NCBI
RefSeq Acc Id: XM_531822   ⟹   XP_531822
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11054,815,594 - 54,845,776 (+)NCBI
Dog10K_Boxer_Tasha1054,767,466 - 54,797,664 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: XP_013973001   ⟸   XM_014117526
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_013973002   ⟸   XM_014117527
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_531822   ⟸   XM_531822
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_003431584   ⟸   XM_003431536
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_022280437   ⟸   XM_022424729
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: ENSCAFP00000047976   ⟸   ENSCAFT00000088885
RefSeq Acc Id: ENSCAFP00000051423   ⟸   ENSCAFT00000060153
RefSeq Acc Id: ENSCAFP00000047945   ⟸   ENSCAFT00000080400
RefSeq Acc Id: ENSCAFP00000004006   ⟸   ENSCAFT00000004328
RefSeq Acc Id: ENSCAFP00000061972   ⟸   ENSCAFT00000082680
RefSeq Acc Id: ENSCAFP00000048925   ⟸   ENSCAFT00000080728
RefSeq Acc Id: XP_038345211   ⟸   XM_038489283
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038345210   ⟸   XM_038489282
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038471107   ⟸   XM_038615179
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038471106   ⟸   XM_038615178
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038536493   ⟸   XM_038680565
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038536492   ⟸   XM_038680564
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038407183   ⟸   XM_038551255
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038407182   ⟸   XM_038551254
- Peptide Label: isoform X1

Promoters
RGD ID:13685069
Promoter ID:EPDNEW_C3135
Type:initiation region
Name:ERLEC1_1
Description:endoplasmic reticulum lectin 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11054,815,634 - 54,815,694EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000002724 Ensembl, ENTREZGENE
Ensembl Protein ENSCAFP00000047976 ENTREZGENE
  ENSCAFP00000061972 ENTREZGENE
NCBI Gene ERLEC1 ENTREZGENE
VGNC ID VGNC:40458 ENTREZGENE