LOC102151424 (stimulated by retinoic acid gene 6 protein-like) - Rat Genome Database

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Gene: LOC102151424 (stimulated by retinoic acid gene 6 protein-like) Canis lupus familiaris
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Symbol: LOC102151424
Name: stimulated by retinoic acid gene 6 protein-like
RGD ID: 12241662
Description: ENCODES a protein that exhibits retinol transmembrane transporter activity (inferred); signaling receptor activity (inferred); INVOLVED IN establishment of localization in cell (inferred); retinol transport (inferred); vitamin A import into cell (inferred); FOUND IN plasma membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: stimulated by retinoic acid gene 6 protein homolog
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11154,601,541 - 54,665,298 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1153,042,827 - 53,091,907 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01155,726,116 - 55,775,725 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11154,223,776 - 54,272,766 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01154,253,816 - 54,302,842 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01154,950,331 - 54,999,439 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
plasma membrane  (IBA,IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Variants

.
Variants in LOC102151424
762 total Variants

Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: XM_005626845   ⟹   XP_005626902
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11154,601,541 - 54,665,298 (+)NCBI
Dog10K_Boxer_Tasha1153,042,827 - 53,091,907 (+)NCBI
Sequence:
RefSeq Acc Id: XM_038490760   ⟹   XP_038346688
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11154,223,776 - 54,272,766 (+)NCBI
RefSeq Acc Id: XM_038552888   ⟹   XP_038408816
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01154,950,331 - 54,999,439 (+)NCBI
RefSeq Acc Id: XM_038616751   ⟹   XP_038472679
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01154,253,816 - 54,302,842 (+)NCBI
RefSeq Acc Id: XM_038682219   ⟹   XP_038538147
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01155,726,116 - 55,775,725 (+)NCBI
RefSeq Acc Id: XP_005626902   ⟸   XM_005626845
- UniProtKB: A0A8C0M981 (UniProtKB/TrEMBL),   A0A8I3NV51 (UniProtKB/TrEMBL),   A0A8P0P6L7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_038346688   ⟸   XM_038490760
RefSeq Acc Id: XP_038472679   ⟸   XM_038616751
RefSeq Acc Id: XP_038538147   ⟸   XM_038682219
- UniProtKB: A0A8C0M981 (UniProtKB/TrEMBL),   A0A8I3NV51 (UniProtKB/TrEMBL),   A0A8P0P6L7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038408816   ⟸   XM_038552888
- UniProtKB: A0A8C0M981 (UniProtKB/TrEMBL),   A0A8I3NV51 (UniProtKB/TrEMBL),   A0A8P0P6L7 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000049308 UniProtKB/TrEMBL
  ENSCAFG00030005111 UniProtKB/TrEMBL
  ENSCAFG00845014146 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000003769.6 UniProtKB/TrEMBL
  ENSCAFT00000091661.2 UniProtKB/TrEMBL
  ENSCAFT00030009381.1 UniProtKB/TrEMBL
  ENSCAFT00845025312.1 UniProtKB/TrEMBL
  ENSCAFT00845025353 ENTREZGENE
  ENSCAFT00845025353.1 UniProtKB/TrEMBL
InterPro STRA6-like UniProtKB/TrEMBL
NCBI Gene LOC102151424 ENTREZGENE
PANTHER COILED-COIL DOMAIN-CONTAINING PROTEIN 180 UniProtKB/TrEMBL
  STIMULATED BY RETINOIC ACID GENE 6 PROTEIN-LIKE UniProtKB/TrEMBL
Pfam RBP_receptor UniProtKB/TrEMBL
UniProt A0A8C0M981 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3NSG3_CANLF UniProtKB/TrEMBL
  A0A8I3NV51 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0N5F1_CANLF UniProtKB/TrEMBL
  A0A8P0P6L7 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-09-12 LOC102151424  stimulated by retinoic acid gene 6 protein-like    stimulated by retinoic acid gene 6 protein homolog  Symbol and/or name change 5135510 APPROVED