AICDA (activation induced cytidine deaminase) - Rat Genome Database

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Gene: AICDA (activation induced cytidine deaminase) Canis lupus familiaris
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Symbol: AICDA
Name: activation induced cytidine deaminase
RGD ID: 12239783
Description: ENCODES a protein that exhibits cytidine deaminase activity (ortholog); INVOLVED IN cellular response to lipopolysaccharide (ortholog); cytidine deamination (ortholog); defense response to bacterium (ortholog); PARTICIPATES IN interleukin-4 signaling pathway; ASSOCIATED WITH acute lymphoblastic leukemia (ortholog); Alphavirus Infections (ortholog); autoimmune disease (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog)
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: AID; cytidine aminohydrolase; single-stranded DNA cytosine deaminase
RGD Orthologs
Human
Mouse
Rat
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12737,064,107 - 37,073,791 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2737,064,080 - 37,073,789 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha279,542,544 - 9,552,236 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02737,413,568 - 37,423,269 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2737,413,475 - 37,423,284 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12737,294,310 - 37,303,981 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02737,329,570 - 37,339,245 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0279,029,099 - 9,038,784 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:15240955   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
AICDA
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12737,064,107 - 37,073,791 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2737,064,080 - 37,073,789 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha279,542,544 - 9,552,236 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02737,413,568 - 37,423,269 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2737,413,475 - 37,423,284 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12737,294,310 - 37,303,981 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02737,329,570 - 37,339,245 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0279,029,099 - 9,038,784 (-)NCBIUU_Cfam_GSD_1.0
AICDA
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38128,602,170 - 8,612,859 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl128,602,155 - 8,613,242 (-)EnsemblGRCh38hg38GRCh38
GRCh37128,754,766 - 8,765,455 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36128,646,029 - 8,656,706 (-)NCBINCBI36Build 36hg18NCBI36
Build 34128,646,028 - 8,656,706NCBI
Celera1210,292,343 - 10,303,027 (-)NCBICelera
Cytogenetic Map12p13.31NCBI
HuRef128,537,559 - 8,548,246 (-)NCBIHuRef
CHM1_1128,723,739 - 8,734,421 (-)NCBICHM1_1
T2T-CHM13v2.0128,585,624 - 8,596,319 (-)NCBIT2T-CHM13v2.0
Aicda
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396122,530,768 - 122,541,139 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6122,530,760 - 122,541,139 (+)EnsemblGRCm39 Ensembl
GRCm386122,553,809 - 122,564,180 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6122,553,801 - 122,564,180 (+)EnsemblGRCm38mm10GRCm38
MGSCv376122,503,827 - 122,514,198 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366122,519,428 - 122,529,798 (+)NCBIMGSCv36mm8
Celera6124,348,050 - 124,358,431 (+)NCBICelera
Cytogenetic Map6F1NCBI
cM Map657.65NCBI
Aicda
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84157,446,120 - 157,455,958 (+)NCBIGRCr8
mRatBN7.24155,774,132 - 155,783,972 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4155,774,132 - 155,783,972 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4162,037,288 - 162,047,024 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04157,820,509 - 157,830,246 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04156,467,264 - 156,476,977 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04155,359,909 - 155,371,104 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4155,359,921 - 155,369,671 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04222,384,433 - 222,395,569 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44159,006,328 - 159,017,501 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14159,257,307 - 159,260,429 (+)NCBI
Celera4144,595,276 - 144,605,030 (+)NCBICelera
Cytogenetic Map4q42NCBI
AICDA
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21014,130,168 - 14,140,777 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11214,126,928 - 14,137,537 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0128,688,392 - 8,699,008 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1128,903,288 - 8,913,895 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl128,904,273 - 8,913,917 (-)Ensemblpanpan1.1panPan2
Aicda
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494598,736,851 - 98,746,413 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493687025,039 - 34,601 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493687025,039 - 34,601 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
AICDA
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl562,777,352 - 62,787,369 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1562,777,236 - 62,787,342 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2565,607,510 - 65,617,612 (+)NCBISscrofa10.2Sscrofa10.2susScr3
AICDA
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1118,426,920 - 8,438,331 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl118,428,922 - 8,431,641 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666089515,359 - 525,346 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Aicda
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248604,912,656 - 4,926,634 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248604,912,938 - 4,927,846 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in AICDA
133 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium
Low 5 4 4 1 1 5 3
Below cutoff 5 12 2 2 2 5 3 9 8 5 3

Sequence


RefSeq Acc Id: ENSCAFT00000022054   ⟹   ENSCAFP00000020480
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2737,070,120 - 37,073,789 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000061322   ⟹   ENSCAFP00000056099
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2737,064,080 - 37,073,159 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000061383   ⟹   ENSCAFP00000048790
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2737,070,120 - 37,073,159 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845052443   ⟹   ENSCAFP00845041144
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl2737,413,475 - 37,423,267 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845052461   ⟹   ENSCAFP00845041161
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl2737,419,647 - 37,423,284 (+)Ensembl
RefSeq Acc Id: NM_001003380   ⟹   NP_001003380
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12737,064,107 - 37,073,791 (+)NCBI
Dog10K_Boxer_Tasha279,542,544 - 9,552,236 (-)NCBI
ROS_Cfam_1.02737,413,568 - 37,423,269 (+)NCBI
UMICH_Zoey_3.12737,294,310 - 37,303,981 (+)NCBI
UNSW_CanFamBas_1.02737,329,570 - 37,339,245 (+)NCBI
UU_Cfam_GSD_1.0279,029,099 - 9,038,784 (-)NCBI
Sequence:
RefSeq Acc Id: NP_001003380   ⟸   NM_001003380
- UniProtKB: Q75W64 (UniProtKB/Swiss-Prot),   A0A8C0JQE4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000056099   ⟸   ENSCAFT00000061322
RefSeq Acc Id: ENSCAFP00000020480   ⟸   ENSCAFT00000022054
RefSeq Acc Id: ENSCAFP00000048790   ⟸   ENSCAFT00000061383
RefSeq Acc Id: ENSCAFP00845041144   ⟸   ENSCAFT00845052443
RefSeq Acc Id: ENSCAFP00845041161   ⟸   ENSCAFT00845052461

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000013897 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030022755 UniProtKB/TrEMBL
  ENSCAFG00040020981 UniProtKB/TrEMBL
  ENSCAFG00845029609 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000022054.5 UniProtKB/TrEMBL
  ENSCAFT00000061322.2 UniProtKB/TrEMBL
  ENSCAFT00000061383.2 UniProtKB/TrEMBL
  ENSCAFT00030041829.1 UniProtKB/TrEMBL
  ENSCAFT00030041854.1 UniProtKB/TrEMBL
  ENSCAFT00040038881.1 UniProtKB/TrEMBL
  ENSCAFT00040038922.1 UniProtKB/TrEMBL
  ENSCAFT00040038950.1 UniProtKB/TrEMBL
  ENSCAFT00845052443 ENTREZGENE
  ENSCAFT00845052443.1 UniProtKB/TrEMBL
  ENSCAFT00845052461.1 UniProtKB/TrEMBL
Gene3D-CATH Cytidine Deaminase, domain 2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro APOBEC/CMP_deaminase_Zn-bd UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  APOBEC_N UniProtKB/TrEMBL
  CMP_dCMP_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Cytidine_deaminase-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report cfa:442983 UniProtKB/Swiss-Prot
NCBI Gene AICDA ENTREZGENE
PANTHER MRNA EDITING ENZYME UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SINGLE-STRANDED DNA CYTOSINE DEAMINASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam APOBEC_C UniProtKB/TrEMBL
  APOBEC_N UniProtKB/TrEMBL
  NAD1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE CYT_DCMP_DEAMINASES_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CYT_DCMP_DEAMINASES_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF53927 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A1Y1FIY4_CANLF UniProtKB/TrEMBL
  A0A8C0JQE4 ENTREZGENE
  A0A8C0PA24_CANLF UniProtKB/TrEMBL
  A0A8C0TD96_CANLF UniProtKB/TrEMBL
  A0A8C0TDC2_CANLF UniProtKB/TrEMBL
  A0A8C0TFR6_CANLF UniProtKB/TrEMBL
  A0A8I3Q6X2_CANLF UniProtKB/TrEMBL
  A0A8I3Q8V8_CANLF UniProtKB/TrEMBL
  A0A8P0NFI4_CANLF UniProtKB/TrEMBL
  A0A8P0NYV5_CANLF UniProtKB/TrEMBL
  AICDA_CANLF UniProtKB/Swiss-Prot
  I7LSU0_CANLF UniProtKB/TrEMBL
  Q75W64 ENTREZGENE
VGNC ID VGNC:37733 ENTREZGENE