H2AC5 (H2A clustered histone 5) - Rat Genome Database

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Gene: H2AC5 (H2A clustered histone 5) Canis lupus familiaris
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Symbol: H2AC5 (Ensembl: H2AC10)
Name: H2A clustered histone 5
RGD ID: 12239591
Description: ENCODES a protein that exhibits DNA binding (inferred); protein heterodimerization activity (inferred); structural constituent of chromatin (inferred); FOUND IN chromosome (inferred); nucleosome (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: histone H2A type 1-E; LOC488262
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13524,001,879 - 24,003,169 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3524,001,900 - 24,002,292 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3523,880,312 - 23,881,611 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03524,116,892 - 24,118,191 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3525,250,259 - 25,250,651 (-)EnsemblROS_Cfam_1.0 Ensembl
ROS_Cfam_1.0 Ensembl3524,309,642 - 24,310,034 (-)EnsemblROS_Cfam_1.0 Ensembl
ROS_Cfam_1.0 Ensembl3524,370,673 - 24,372,392 (-)EnsemblROS_Cfam_1.0 Ensembl
ROS_Cfam_1.0 Ensembl3524,116,926 - 24,117,318 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13523,933,168 - 23,934,467 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03523,984,247 - 23,985,546 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03525,416,852 - 25,418,152 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
chromosome  (IEA)
nucleosome  (IBA,IEA)
nucleus  (IBA,IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Variants

.
Variants in H2AC5
42 total Variants

Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCAFT00000046836   ⟹   ENSCAFP00000042504
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl3524,001,900 - 24,002,292 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845045023   ⟹   ENSCAFP00845035289
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl3524,116,926 - 24,117,318 (+)Ensembl
RefSeq Acc Id: XM_014110559   ⟹   XP_013966034
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.13524,001,879 - 24,003,169 (+)NCBI
Dog10K_Boxer_Tasha3523,880,312 - 23,881,611 (+)NCBI
Sequence:
RefSeq Acc Id: XM_038446548   ⟹   XP_038302476
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.03524,116,892 - 24,118,191 (+)NCBI
RefSeq Acc Id: XM_038520679   ⟹   XP_038376607
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.13523,933,168 - 23,934,467 (+)NCBI
RefSeq Acc Id: XM_038584348   ⟹   XP_038440276
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.03525,416,852 - 25,418,152 (+)NCBI
RefSeq Acc Id: XM_038648786   ⟹   XP_038504714
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.03523,984,247 - 23,985,546 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_013966034   ⟸   XM_014110559
- UniProtKB: A0A8C0NV55 (UniProtKB/TrEMBL),   A0A5F4CIE3 (UniProtKB/TrEMBL),   A0A8C0JNL4 (UniProtKB/TrEMBL),   A0A8C0S313 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000042504   ⟸   ENSCAFT00000046836
RefSeq Acc Id: XP_038376607   ⟸   XM_038520679
RefSeq Acc Id: XP_038504714   ⟸   XM_038648786
RefSeq Acc Id: XP_038302476   ⟸   XM_038446548
- UniProtKB: A0A5F4CIE3 (UniProtKB/TrEMBL),   A0A8C0JNL4 (UniProtKB/TrEMBL),   A0A8C0NV55 (UniProtKB/TrEMBL),   A0A8C0S313 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038440276   ⟸   XM_038584348
- UniProtKB: A0A5F4CIE3 (UniProtKB/TrEMBL),   A0A8C0JNL4 (UniProtKB/TrEMBL),   A0A8C0NV55 (UniProtKB/TrEMBL),   A0A8C0S313 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845035289   ⟸   ENSCAFT00845045023
Protein Domains
Histone H2A C-terminal   Histone H2A/H2B/H3


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000031754 Ensembl
  ENSCAFG00000044066 UniProtKB/TrEMBL
  ENSCAFG00000054022 UniProtKB/TrEMBL
  ENSCAFG00000054263 UniProtKB/TrEMBL
  ENSCAFG00000055548 UniProtKB/TrEMBL
  ENSCAFG00000056824 UniProtKB/TrEMBL
  ENSCAFG00000058744 UniProtKB/TrEMBL
  ENSCAFG00030019798 UniProtKB/TrEMBL
  ENSCAFG00030020327 UniProtKB/TrEMBL
  ENSCAFG00030021227 UniProtKB/TrEMBL
  ENSCAFG00030021347 UniProtKB/TrEMBL
  ENSCAFG00040009418 UniProtKB/TrEMBL
  ENSCAFG00040024858 UniProtKB/TrEMBL
  ENSCAFG00040025131 UniProtKB/TrEMBL
  ENSCAFG00845015983 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00845025509 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSCAFG00845026022 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00845026304 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000071488.2 UniProtKB/TrEMBL
  ENSCAFT00000094972.1 UniProtKB/TrEMBL
  ENSCAFT00000097498.1 UniProtKB/TrEMBL
  ENSCAFT00000097666.1 UniProtKB/TrEMBL
  ENSCAFT00000106038.1 UniProtKB/TrEMBL
  ENSCAFT00000107956.1 UniProtKB/TrEMBL
  ENSCAFT00030036361.1 UniProtKB/TrEMBL
  ENSCAFT00030037302.1 UniProtKB/TrEMBL
  ENSCAFT00030038950.1 UniProtKB/TrEMBL
  ENSCAFT00030039163.1 UniProtKB/TrEMBL
  ENSCAFT00040017454.1 UniProtKB/TrEMBL
  ENSCAFT00040046313.1 UniProtKB/TrEMBL
  ENSCAFT00040046845.1 UniProtKB/TrEMBL
  ENSCAFT00845028420.1 UniProtKB/TrEMBL
  ENSCAFT00845045023 ENTREZGENE
  ENSCAFT00845045023.1 UniProtKB/TrEMBL
  ENSCAFT00845045912.1 UniProtKB/TrEMBL
  ENSCAFT00845046388.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.20.10 UniProtKB/TrEMBL
InterPro Histone-fold UniProtKB/TrEMBL
  Histone_H2A UniProtKB/TrEMBL
  Histone_H2A/H2B/H3 UniProtKB/TrEMBL
  Histone_H2A_C UniProtKB/TrEMBL
  Histone_H2A_CS UniProtKB/TrEMBL
KEGG Report cfa:106558234 UniProtKB/TrEMBL
  cfa:488262 UniProtKB/TrEMBL
  cfa:488308 UniProtKB/TrEMBL
NCBI Gene LOC488262 ENTREZGENE
PANTHER HISTONE H2A TYPE 1-E UniProtKB/TrEMBL
  PTHR23430 UniProtKB/TrEMBL
Pfam Histone UniProtKB/TrEMBL
  Histone_H2A_C UniProtKB/TrEMBL
PRINTS HISTONEH2A UniProtKB/TrEMBL
PROSITE HISTONE_H2A UniProtKB/TrEMBL
SMART H2A UniProtKB/TrEMBL
Superfamily-SCOP SSF47113 UniProtKB/TrEMBL
UniProt A0A5F4CIE3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0JNL4 ENTREZGENE
  A0A8C0NV55 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0S313 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:83715 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-11-05 H2AC5  H2A clustered histone 5  LOC488262  histone H2A type 1-E  Symbol and/or name change 5135510 APPROVED