TMEM229A (transmembrane protein 229A) - Rat Genome Database

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Gene: TMEM229A (transmembrane protein 229A) Canis lupus familiaris
Analyze
Symbol: TMEM229A
Name: transmembrane protein 229A
RGD ID: 12238808
Description: ASSOCIATED WITH genetic disease (ortholog); pleomorphic xanthoastrocytoma (ortholog); FOUND IN membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: LOC100684352; LOC100856268; LOC106558520; LOC106559081; LOC106559719; transmembrane protein 229A-like
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1872,110 - 84,725 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1411,646,915 - 11,648,024 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1411,646,915 - 11,648,024 (+)NCBICanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1411,337,937 - 11,340,582 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01411,431,371 - 11,436,599 (+)NCBIROS_Cfam_1.0
UNSW_CanFamBas_1.01411,358,653 - 11,363,856 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01411,599,493 - 11,601,046 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
membrane  (IEA)

References

Genomics

Comparative Map Data
TMEM229A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1872,110 - 84,725 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1411,646,915 - 11,648,024 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1411,646,915 - 11,648,024 (+)NCBICanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1411,337,937 - 11,340,582 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01411,431,371 - 11,436,599 (+)NCBIROS_Cfam_1.0
UNSW_CanFamBas_1.01411,358,653 - 11,363,856 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01411,599,493 - 11,601,046 (+)NCBIUU_Cfam_GSD_1.0
TMEM229A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387124,030,921 - 124,033,067 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7124,030,921 - 124,033,067 (-)EnsemblGRCh38hg38GRCh38
GRCh377123,670,975 - 123,673,121 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 367123,459,151 - 123,460,349 (-)NCBINCBI36Build 36hg18NCBI36
Celera7118,474,746 - 118,477,299 (-)NCBICelera
Cytogenetic Map7q31.32NCBI
HuRef7118,035,496 - 118,038,042 (-)NCBIHuRef
CHM1_17123,604,295 - 123,606,848 (-)NCBICHM1_1
T2T-CHM13v2.07125,347,640 - 125,349,786 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27123,059,589 - 123,062,142 (-)NCBI
Tmem229a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39624,951,140 - 24,956,124 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl624,951,140 - 24,956,296 (-)EnsemblGRCm39 Ensembl
GRCm38624,951,141 - 24,956,125 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl624,951,141 - 24,956,297 (-)EnsemblGRCm38mm10GRCm38
MGSCv37624,901,141 - 24,906,125 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36624,903,789 - 24,906,101 (-)NCBIMGSCv36mm8
Celera624,961,659 - 24,966,763 (-)NCBICelera
Cytogenetic Map6A3.1NCBI
cM Map611.29NCBI
Tmem229a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8454,405,822 - 54,410,802 (-)NCBIGRCr8
mRatBN7.2453,440,287 - 53,445,286 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl453,443,831 - 53,444,940 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx458,427,104 - 58,432,084 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0454,347,060 - 54,352,041 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0452,765,663 - 52,770,644 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0452,345,605 - 52,350,624 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl452,345,605 - 52,350,624 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0452,115,167 - 52,120,186 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4451,417,197 - 51,422,216 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera448,602,511 - 48,607,530 (-)NCBICelera
Cytogenetic Map4q22NCBI
Tmem229a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554795,488,960 - 5,490,309 (-)NCBIChiLan1.0ChiLan1.0
TMEM229A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26160,881,093 - 160,885,703 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1712,891,343 - 12,895,953 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v07116,021,378 - 116,023,524 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17128,703,586 - 128,705,727 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7128,704,539 - 128,705,678 (-)Ensemblpanpan1.1panPan2
Tmem229a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511850,659,987 - 50,665,291 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366051,538,938 - 1,540,044 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366051,538,483 - 1,542,397 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TMEM229A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1823,531,536 - 23,532,648 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11823,531,498 - 23,533,619 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21825,128,586 - 25,130,784 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TMEM229A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12192,822,707 - 92,825,451 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2192,823,855 - 92,824,991 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604210,640,578 - 10,642,747 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tmem229a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478311,996,531 - 11,997,655 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478311,996,169 - 12,000,881 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in TMEM229A
113 total Variants

Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCAFT00000002764   ⟹   ENSCAFP00000002564
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1411,646,915 - 11,648,024 (+)Ensembl
RefSeq Acc Id: XM_038443124   ⟹   XP_038299052
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha1411,337,937 - 11,340,582 (+)NCBI
RefSeq Acc Id: XM_038556637   ⟹   XP_038412565
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01411,599,493 - 11,601,046 (+)NCBI
RefSeq Acc Id: XM_038620566   ⟹   XP_038476494
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01411,358,653 - 11,363,856 (+)NCBI
RefSeq Acc Id: XM_038686256   ⟹   XP_038542184
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01411,431,371 - 11,436,599 (+)NCBI
Protein Sequences
Protein RefSeqs XP_038299052 (Get FASTA)   NCBI Sequence Viewer  
  XP_038412565 (Get FASTA)   NCBI Sequence Viewer  
  XP_038476494 (Get FASTA)   NCBI Sequence Viewer  
  XP_038542184 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCAFP00000072118.1
Reference Protein Sequences
RefSeq Acc Id: ENSCAFP00000002564   ⟸   ENSCAFT00000002764
RefSeq Acc Id: XP_038476494   ⟸   XM_038620566
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038542184   ⟸   XM_038686256
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038299052   ⟸   XM_038443124
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038412565   ⟸   XM_038556637
- Peptide Label: isoform X2


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000001762 Ensembl
  ENSCAFG00000050149 UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000106220.1 UniProtKB/TrEMBL
NCBI Gene LOC106559081 ENTREZGENE
PANTHER TRANSMEMBRANE PROTEIN 229 FAMILY MEMBER UniProtKB/TrEMBL
  TRANSMEMBRANE PROTEIN 229A UniProtKB/TrEMBL
UniProt A0A8P0TRV5_CANLF UniProtKB/TrEMBL
VGNC ID VGNC:47539 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-01-14 TMEM229A  transmembrane protein 229A  LOC100684352  transmembrane protein 229A-like  Data merged from RGD:12059152 737654 PROVISIONAL
2021-01-14 TMEM229A  transmembrane protein 229A  LOC106559719  transmembrane protein 229A-like  Data merged from RGD:12409712 737654 PROVISIONAL
2021-01-14 TMEM229A  transmembrane protein 229A  TMEM229A  transmembrane protein 229A  Data merged from RGD:12269636 737654 PROVISIONAL
2021-01-14 TMEM229A  transmembrane protein 229A  LOC100856268  transmembrane protein 229A-like  Data merged from RGD:12112875 737654 PROVISIONAL
2021-01-14 TMEM229A  transmembrane protein 229A  LOC106558520  transmembrane protein 229A-like  Data merged from RGD:12153059 737654 PROVISIONAL
2021-01-12 TMEM229A  transmembrane protein 229A  LOC106559081  transmembrane protein 229A-like  Symbol and/or name change 5135510 APPROVED