CATSPER1 (cation channel sperm associated 1) - Rat Genome Database

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Gene: CATSPER1 (cation channel sperm associated 1) Canis lupus familiaris
Analyze
Symbol: CATSPER1
Name: cation channel sperm associated 1
RGD ID: 12237947
Description: ENCODES a protein that exhibits calcium-activated cation channel activity (inferred); voltage-gated calcium channel activity (inferred); INVOLVED IN calcium ion transport (ortholog); flagellated sperm motility (ortholog); fusion of sperm to egg plasma membrane involved in single fertilization (ortholog); ASSOCIATED WITH Aicardi-Goutieres Syndrome 3 (ortholog); autosomal recessive cutis laxa type IB (ortholog); Bardet-Biedl syndrome (ortholog); FOUND IN plasma membrane (ortholog); sperm flagellum (ortholog); sperm principal piece (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: cation channel sperm-associated protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11851,249,897 - 51,260,211 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1851,250,039 - 51,260,168 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1849,858,456 - 49,868,749 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01852,287,745 - 52,298,253 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1852,287,874 - 52,298,216 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11851,388,178 - 51,398,464 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01850,962,454 - 50,972,748 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01851,752,223 - 51,762,523 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
CATSPER1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11851,249,897 - 51,260,211 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1851,250,039 - 51,260,168 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1849,858,456 - 49,868,749 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01852,287,745 - 52,298,253 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1852,287,874 - 52,298,216 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11851,388,178 - 51,398,464 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01850,962,454 - 50,972,748 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01851,752,223 - 51,762,523 (+)NCBIUU_Cfam_GSD_1.0
CATSPER1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381166,016,752 - 66,026,479 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1166,016,752 - 66,026,479 (-)EnsemblGRCh38hg38GRCh38
GRCh371165,784,223 - 65,793,950 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361165,540,799 - 65,550,560 (-)NCBINCBI36Build 36hg18NCBI36
Build 341165,540,799 - 65,550,560NCBI
Celera1163,108,580 - 63,118,345 (-)NCBICelera
Cytogenetic Map11q13.1NCBI
HuRef1162,110,292 - 62,120,056 (-)NCBIHuRef
CHM1_11165,668,345 - 65,678,109 (-)NCBICHM1_1
T2T-CHM13v2.01166,010,876 - 66,020,602 (-)NCBIT2T-CHM13v2.0
Catsper1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39195,385,643 - 5,394,309 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl195,385,769 - 5,394,308 (+)EnsemblGRCm39 Ensembl
GRCm38195,335,615 - 5,344,281 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl195,335,741 - 5,344,280 (+)EnsemblGRCm38mm10GRCm38
MGSCv37195,335,741 - 5,344,153 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36195,335,741 - 5,344,153 (+)NCBIMGSCv36mm8
Celera195,207,633 - 5,216,045 (+)NCBICelera
Cytogenetic Map19ANCBI
cM Map194.3NCBI
Catsper1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81212,072,371 - 212,081,179 (+)NCBIGRCr8
mRatBN7.21202,643,009 - 202,652,059 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1202,643,038 - 202,651,824 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01220,715,000 - 220,724,235 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1220,714,995 - 220,719,939 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01227,644,645 - 227,653,234 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41207,979,161 - 207,987,686 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1200,178,195 - 200,187,563 (+)NCBICelera
Cytogenetic Map1q43NCBI
Catsper1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495542219,315,640 - 19,322,868 (+)NCBIChiLan1.0ChiLan1.0
CATSPER1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2967,249,083 - 67,261,982 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11168,292,062 - 68,304,846 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01161,381,175 - 61,391,455 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11164,707,912 - 64,717,689 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1164,707,912 - 64,717,689 (-)Ensemblpanpan1.1panPan2
Catsper1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049477,087,082 - 7,096,086 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049365993,529,621 - 3,538,291 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CATSPER1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl26,312,906 - 6,321,690 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.126,312,906 - 6,321,690 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.225,384,927 - 5,393,273 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CATSPER1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.118,231,436 - 8,241,189 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl18,231,915 - 8,241,048 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038105,517,162 - 105,526,620 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Catsper1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462476720,410,216 - 20,420,303 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in CATSPER1
131 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 8
Low
Below cutoff 3 2 3 2 6 1 7 1 3

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_014121200 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_014121201 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022405631 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038424922 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038424923 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038424924 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038501158 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038501159 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038501160 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038563861 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038563862 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038563864 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038627985 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038627986 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038627987 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000018 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000214 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000037 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000176 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000018 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSCAFT00000020737   ⟹   ENSCAFP00000019251
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1851,250,039 - 51,260,136 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000043062   ⟹   ENSCAFP00000037670
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1851,250,039 - 51,260,168 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845025371   ⟹   ENSCAFP00845019968
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1852,287,874 - 52,298,216 (+)Ensembl
RefSeq Acc Id: XM_014121200   ⟹   XP_013976675
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11851,249,899 - 51,260,211 (+)NCBI
Dog10K_Boxer_Tasha1849,858,456 - 49,868,747 (+)NCBI
Sequence:
RefSeq Acc Id: XM_014121201   ⟹   XP_013976676
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11851,249,897 - 51,260,211 (+)NCBI
Dog10K_Boxer_Tasha1849,858,456 - 49,868,749 (+)NCBI
Sequence:
RefSeq Acc Id: XM_022405631   ⟹   XP_022261339
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11851,249,898 - 51,260,211 (+)NCBI
Dog10K_Boxer_Tasha1849,858,456 - 49,868,747 (+)NCBI
Sequence:
RefSeq Acc Id: XM_038424922   ⟹   XP_038280850
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01852,287,745 - 52,298,251 (+)NCBI
RefSeq Acc Id: XM_038424923   ⟹   XP_038280851
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01852,287,745 - 52,298,251 (+)NCBI
RefSeq Acc Id: XM_038424924   ⟹   XP_038280852
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01852,287,745 - 52,298,253 (+)NCBI
RefSeq Acc Id: XM_038501158   ⟹   XP_038357086
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11851,388,178 - 51,398,462 (+)NCBI
RefSeq Acc Id: XM_038501159   ⟹   XP_038357087
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11851,388,178 - 51,398,463 (+)NCBI
RefSeq Acc Id: XM_038501160   ⟹   XP_038357088
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11851,388,178 - 51,398,464 (+)NCBI
RefSeq Acc Id: XM_038563861   ⟹   XP_038419789
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01851,752,223 - 51,762,521 (+)NCBI
RefSeq Acc Id: XM_038563862   ⟹   XP_038419790
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01851,752,223 - 51,762,521 (+)NCBI
RefSeq Acc Id: XM_038563864   ⟹   XP_038419792
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01851,752,223 - 51,762,523 (+)NCBI
RefSeq Acc Id: XM_038627985   ⟹   XP_038483913
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01850,962,454 - 50,972,746 (+)NCBI
RefSeq Acc Id: XM_038627986   ⟹   XP_038483914
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01850,962,454 - 50,972,747 (+)NCBI
RefSeq Acc Id: XM_038627987   ⟹   XP_038483915
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01850,962,454 - 50,972,748 (+)NCBI
RefSeq Acc Id: XP_013976676   ⟸   XM_014121201
- Peptide Label: isoform X3
- UniProtKB: A0A8I3NPS5 (UniProtKB/TrEMBL),   A0A8P0NPH1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013976675   ⟸   XM_014121200
- Peptide Label: isoform X1
- UniProtKB: A0A8I3NPS5 (UniProtKB/TrEMBL),   A0A8P0NPH1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_022261339   ⟸   XM_022405631
- Peptide Label: isoform X2
- UniProtKB: A0A8I3NPS5 (UniProtKB/TrEMBL),   A0A8P0NPH1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000019251   ⟸   ENSCAFT00000020737
RefSeq Acc Id: ENSCAFP00000037670   ⟸   ENSCAFT00000043062
RefSeq Acc Id: XP_038357088   ⟸   XM_038501160
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038357087   ⟸   XM_038501159
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038357086   ⟸   XM_038501158
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038483915   ⟸   XM_038627987
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038483914   ⟸   XM_038627986
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038483913   ⟸   XM_038627985
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038280852   ⟸   XM_038424924
- Peptide Label: isoform X3
- UniProtKB: A0A8I3NPS5 (UniProtKB/TrEMBL),   A0A8P0NPH1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038280850   ⟸   XM_038424922
- Peptide Label: isoform X1
- UniProtKB: A0A8I3NPS5 (UniProtKB/TrEMBL),   A0A8P0NPH1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038280851   ⟸   XM_038424923
- Peptide Label: isoform X2
- UniProtKB: A0A8I3NPS5 (UniProtKB/TrEMBL),   A0A8P0NPH1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038419792   ⟸   XM_038563864
- Peptide Label: isoform X3
- UniProtKB: A0A8I3NPS5 (UniProtKB/TrEMBL),   A0A8P0NPH1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038419789   ⟸   XM_038563861
- Peptide Label: isoform X1
- UniProtKB: A0A8I3NPS5 (UniProtKB/TrEMBL),   A0A8P0NPH1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038419790   ⟸   XM_038563862
- Peptide Label: isoform X2
- UniProtKB: A0A8I3NPS5 (UniProtKB/TrEMBL),   A0A8P0NPH1 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845019968   ⟸   ENSCAFT00845025371
Protein Domains
Ion transport


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000013070 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00845014181 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000043062.4 UniProtKB/TrEMBL
  ENSCAFT00845025371 ENTREZGENE
  ENSCAFT00845025371.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.287.70 UniProtKB/TrEMBL
  1.20.120.350 UniProtKB/TrEMBL
InterPro CatSper1 UniProtKB/TrEMBL
  Ion_trans_dom UniProtKB/TrEMBL
  Volt_channel_dom_sf UniProtKB/TrEMBL
NCBI Gene CATSPER1 ENTREZGENE
PANTHER CATION CHANNEL SPERM-ASSOCIATED PROTEIN 1 UniProtKB/TrEMBL
  PTHR47193 UniProtKB/TrEMBL
Pfam Ion_trans UniProtKB/TrEMBL
Superfamily-SCOP Voltage-gated potassium channels UniProtKB/TrEMBL
UniProt A0A8I3NPS5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0NPH1 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:38744 ENTREZGENE