APOH (apolipoprotein H) - Rat Genome Database

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Gene: APOH (apolipoprotein H) Canis lupus familiaris
Analyze
Symbol: APOH
Name: apolipoprotein H
RGD ID: 12237885
Description: ENCODES a protein that exhibits lipid binding (ortholog); INVOLVED IN aging (ortholog); animal organ regeneration (ortholog); blood coagulation (ortholog); PARTICIPATES IN coagulation cascade pathway; ASSOCIATED WITH antiphospholipid syndrome (ortholog); arteriosclerosis (ortholog); Chemical and Drug Induced Liver Injury (ortholog); FOUND IN cell surface (ortholog); cytoplasm (ortholog); extracellular space (ortholog)
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: apo-H; B2GPI; beta(2)GPI; beta-2-glycoprotein 1; beta-2-glycoprotein I
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1914,082,648 - 14,095,186 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl914,082,541 - 14,095,185 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha914,976,443 - 14,988,978 (+)NCBI
ROS_Cfam_1.0915,744,714 - 15,757,283 (+)NCBI
UMICH_Zoey_3.1914,691,324 - 14,703,853 (+)NCBI
UNSW_CanFamBas_1.0912,829,414 - 12,841,962 (-)NCBI
UU_Cfam_GSD_1.0912,830,254 - 12,842,800 (-)NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:7682067   PMID:10235557  


Genomics

Comparative Map Data
APOH
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1914,082,648 - 14,095,186 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl914,082,541 - 14,095,185 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha914,976,443 - 14,988,978 (+)NCBI
ROS_Cfam_1.0915,744,714 - 15,757,283 (+)NCBI
UMICH_Zoey_3.1914,691,324 - 14,703,853 (+)NCBI
UNSW_CanFamBas_1.0912,829,414 - 12,841,962 (-)NCBI
UU_Cfam_GSD_1.0912,830,254 - 12,842,800 (-)NCBI
APOH
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1766,212,033 - 66,256,525 (-)EnsemblGRCh38hg38GRCh38
GRCh381766,212,033 - 66,229,415 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371764,208,151 - 64,225,533 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361761,638,609 - 61,656,018 (-)NCBINCBI36hg18NCBI36
Build 341761,638,613 - 61,655,992NCBI
Celera1760,780,183 - 60,797,591 (-)NCBI
Cytogenetic Map17q24.2NCBI
HuRef1759,599,926 - 59,617,004 (-)NCBIHuRef
CHM1_11764,272,419 - 64,289,828 (-)NCBICHM1_1
Apoh
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911108,286,123 - 108,305,222 (+)NCBIGRCm39mm39
GRCm39 Ensembl11108,234,180 - 108,305,222 (+)Ensembl
GRCm3811108,395,297 - 108,414,396 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11108,343,354 - 108,414,396 (+)EnsemblGRCm38mm10GRCm38
MGSCv3711108,256,611 - 108,275,710 (+)NCBIGRCm37mm9NCBIm37
MGSCv3611108,211,403 - 108,230,481 (+)NCBImm8
Celera11120,134,821 - 120,148,689 (+)NCBICelera
Cytogenetic Map11E1NCBI
cM Map1171.8NCBI
Apoh
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21093,342,435 - 93,356,334 (+)NCBI
Rnor_6.0 Ensembl1096,639,924 - 96,653,938 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01096,640,013 - 96,653,939 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01096,364,217 - 96,378,118 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41097,725,088 - 97,739,213 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11097,739,457 - 97,753,582 (+)NCBI
Celera1092,007,324 - 92,020,973 (+)NCBICelera
Cytogenetic Map10q32.1NCBI
Apoh
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554785,610,164 - 5,626,020 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554785,612,258 - 5,626,061 (-)NCBIChiLan1.0ChiLan1.0
APOH
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11765,365,250 - 65,382,483 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1765,365,250 - 65,382,483 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01760,154,389 - 60,171,762 (-)NCBIMhudiblu_PPA_v0panPan3
Apoh
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560212,499,435 - 12,511,134 (-)NCBI
SpeTri2.0NW_0049365416,683,483 - 6,695,094 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
APOH
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1212,827,201 - 12,839,175 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11212,827,195 - 12,839,172 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21213,142,347 - 13,154,323 (-)NCBISscrofa10.2Sscrofa10.2susScr3
APOH
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11655,209,142 - 55,231,176 (+)NCBI
Vero_WHO_p1.0NW_02366607726,257,256 - 26,290,880 (+)NCBI
Apoh
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248702,082,050 - 2,096,220 (+)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High 6 6 6
Medium
Low 1 1 4 6 5 4
Below cutoff 4 4 12 6 6 12 8 5 2

Sequence


Reference Sequences
RefSeq Acc Id: ENSCAFT00000017923   ⟹   ENSCAFP00000016597
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl914,082,648 - 14,095,185 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000066209   ⟹   ENSCAFP00000045380
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl914,082,541 - 14,093,863 (+)Ensembl
RefSeq Acc Id: NM_001003265   ⟹   NP_001003265
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1914,082,648 - 14,095,186 (+)NCBI
Dog10K_Boxer_Tasha914,976,443 - 14,988,978 (+)NCBI
ROS_Cfam_1.0915,744,714 - 15,757,283 (+)NCBI
UMICH_Zoey_3.1914,691,324 - 14,703,853 (+)NCBI
UNSW_CanFamBas_1.0912,829,414 - 12,841,962 (-)NCBI
UU_Cfam_GSD_1.0912,830,254 - 12,842,800 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001003265 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAD32850 (Get FASTA)   NCBI Sequence Viewer  
  CAA51438 (Get FASTA)   NCBI Sequence Viewer  
  P33703 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_001003265   ⟸   NM_001003265
- Peptide Label: precursor
- UniProtKB: P33703 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSCAFP00000045380   ⟸   ENSCAFT00000066209
RefSeq Acc Id: ENSCAFP00000016597   ⟸   ENSCAFT00000017923
Protein Domains
Sushi

Promoters
RGD ID:13684468
Promoter ID:EPDNEW_C2538
Type:initiation region
Name:APOH_1
Description:apolipoprotein H
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1914,082,630 - 14,082,690EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000011281 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSCAFG00040020697 UniProtKB/Swiss-Prot
Ensembl Protein ENSCAFP00000016597 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSCAFP00000045380 UniProtKB/TrEMBL
  ENSCAFP00040033406 UniProtKB/Swiss-Prot
Ensembl Transcript ENSCAFT00000017923 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSCAFT00000066209 UniProtKB/TrEMBL
  ENSCAFT00040038309 UniProtKB/Swiss-Prot
InterPro Sushi/SCR/CCP_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Sushi_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Sushi_SCR_CCP_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report cfa:403945 UniProtKB/Swiss-Prot
NCBI Gene APOH ENTREZGENE
Pfam Sushi UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Sushi_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE SUSHI UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART CCP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF57535 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A5F4BVF9_CANLF UniProtKB/TrEMBL
  APOH_CANLF UniProtKB/Swiss-Prot, ENTREZGENE
  Q9TV83_CANLF UniProtKB/TrEMBL
VGNC ID VGNC:38004 ENTREZGENE