CAB39L (calcium binding protein 39 like) - Rat Genome Database

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Gene: CAB39L (calcium binding protein 39 like) Canis lupus familiaris
Analyze
Symbol: CAB39L
Name: calcium binding protein 39 like
RGD ID: 12237590
Description: ENCODES a protein that exhibits protein serine/threonine kinase activator activity (inferred); INVOLVED IN intracellular signal transduction (inferred); ASSOCIATED WITH chromosome 13q14 deletion syndrome (ortholog); genetic disease (ortholog); intellectual disability (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: calcium-binding protein 39-like
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1222,319,239 - 2,426,554 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl222,354,884 - 2,460,857 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha222,348,042 - 2,455,899 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0222,310,568 - 2,418,253 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl222,346,006 - 2,446,273 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1222,218,630 - 2,326,513 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0222,268,028 - 2,375,638 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0222,286,336 - 2,394,265 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
CAB39L
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1222,319,239 - 2,426,554 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl222,354,884 - 2,460,857 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha222,348,042 - 2,455,899 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0222,310,568 - 2,418,253 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl222,346,006 - 2,446,273 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1222,218,630 - 2,326,513 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0222,268,028 - 2,375,638 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0222,286,336 - 2,394,265 (+)NCBIUU_Cfam_GSD_1.0
CAB39L
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381349,308,650 - 49,444,064 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1349,308,650 - 49,444,064 (-)EnsemblGRCh38hg38GRCh38
GRCh371349,882,786 - 50,018,200 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361348,780,787 - 48,916,222 (-)NCBINCBI36Build 36hg18NCBI36
Build 341348,781,944 - 48,855,029NCBI
Celera1330,938,637 - 31,073,173 (-)NCBICelera
Cytogenetic Map13q14.2NCBI
HuRef1330,676,584 - 30,811,804 (-)NCBIHuRef
CHM1_11349,850,328 - 49,985,647 (-)NCBICHM1_1
T2T-CHM13v2.01348,529,853 - 48,662,696 (-)NCBIT2T-CHM13v2.0
Cab39l
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391459,678,400 - 59,786,353 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1459,678,421 - 59,823,213 (+)EnsemblGRCm39 Ensembl
GRCm381459,440,934 - 59,548,904 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1459,440,972 - 59,585,764 (+)EnsemblGRCm38mm10GRCm38
MGSCv371460,059,818 - 60,167,740 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361458,395,091 - 58,503,013 (+)NCBIMGSCv36mm8
Celera1457,241,282 - 57,350,443 (+)NCBICelera
Cytogenetic Map14C3NCBI
cM Map1431.48NCBI
Cab39l
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81537,782,778 - 37,885,191 (+)NCBIGRCr8
mRatBN7.21533,606,588 - 33,710,518 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1533,606,694 - 33,743,545 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1535,483,282 - 35,571,440 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01536,633,958 - 36,722,120 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01535,081,902 - 35,170,109 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01539,745,124 - 39,849,022 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1539,759,257 - 39,870,208 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01543,566,520 - 43,670,759 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41538,552,234 - 38,640,594 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11538,567,933 - 38,656,288 (+)NCBI
Celera1533,327,289 - 33,415,479 (+)NCBICelera
Cytogenetic Map15p12NCBI
Cab39l
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554312,780,839 - 2,889,769 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554312,781,714 - 2,899,857 (-)NCBIChiLan1.0ChiLan1.0
CAB39L
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21450,746,287 - 50,884,238 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11349,397,524 - 49,535,900 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01330,446,643 - 30,584,608 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11349,198,143 - 49,335,634 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1349,198,143 - 49,288,816 (-)Ensemblpanpan1.1panPan2
Cab39l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945158,931,175 - 159,004,614 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365652,417,309 - 2,472,189 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365652,415,225 - 2,536,311 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CAB39L
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1118,313,796 - 18,401,235 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11118,297,669 - 18,400,398 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21118,612,809 - 18,715,208 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CAB39L
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1327,226,012 - 27,314,413 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl327,225,946 - 27,314,318 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605716,526,353 - 16,661,366 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cab39l
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247485,252,994 - 5,411,002 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247485,238,235 - 5,408,654 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in CAB39L
817 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 1 2 8 5
Low 5 4 22 6 6 6 5 1 10 5 6
Below cutoff 1 5

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005633859 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005633860 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005633861 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005633862 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005633864 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022408262 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038430880 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038430881 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038430882 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038430883 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038430885 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038430886 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038430887 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038456713 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038506270 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038506271 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038506272 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038506273 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038506274 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038506275 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038506276 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038569462 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038569463 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038569464 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038569466 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038569467 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038569468 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038569469 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038633629 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038633630 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038633631 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038633632 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038633633 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038633634 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038633635 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_542560 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000022 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000251 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000060 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000360 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000022 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSCAFT00000007107   ⟹   ENSCAFP00000006581
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl222,354,884 - 2,426,356 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000083554   ⟹   ENSCAFP00000064713
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl222,354,884 - 2,460,857 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845042445   ⟹   ENSCAFP00845033275
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl222,346,006 - 2,446,273 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845042529   ⟹   ENSCAFP00845033337
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl222,346,006 - 2,419,540 (+)Ensembl
RefSeq Acc Id: XM_005633859   ⟹   XP_005633916
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1222,319,245 - 2,426,554 (+)NCBI
Dog10K_Boxer_Tasha222,348,103 - 2,455,897 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005633860   ⟹   XP_005633917
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1222,354,653 - 2,426,554 (+)NCBI
Dog10K_Boxer_Tasha222,383,454 - 2,455,897 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005633861   ⟹   XP_005633918
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1222,319,295 - 2,426,554 (+)NCBI
Dog10K_Boxer_Tasha222,348,111 - 2,455,897 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005633862   ⟹   XP_005633919
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1222,354,653 - 2,426,554 (+)NCBI
Dog10K_Boxer_Tasha222,383,454 - 2,455,898 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005633864   ⟹   XP_005633921
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1222,365,295 - 2,426,554 (+)NCBI
Dog10K_Boxer_Tasha222,394,089 - 2,455,899 (+)NCBI
Sequence:
RefSeq Acc Id: XM_038430880   ⟹   XP_038286808
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0222,310,629 - 2,418,251 (+)NCBI
RefSeq Acc Id: XM_038430881   ⟹   XP_038286809
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0222,310,637 - 2,418,251 (+)NCBI
RefSeq Acc Id: XM_038430882   ⟹   XP_038286810
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0222,345,999 - 2,418,251 (+)NCBI
RefSeq Acc Id: XM_038430883   ⟹   XP_038286811
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0222,345,999 - 2,418,252 (+)NCBI
RefSeq Acc Id: XM_038430885   ⟹   XP_038286813
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0222,345,999 - 2,418,252 (+)NCBI
RefSeq Acc Id: XM_038430886   ⟹   XP_038286814
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0222,310,568 - 2,418,252 (+)NCBI
RefSeq Acc Id: XM_038430887   ⟹   XP_038286815
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0222,356,655 - 2,418,253 (+)NCBI
RefSeq Acc Id: XM_038456713   ⟹   XP_038312641
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha222,383,454 - 2,455,898 (+)NCBI
RefSeq Acc Id: XM_038506270   ⟹   XP_038362198
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1222,218,691 - 2,326,511 (+)NCBI
RefSeq Acc Id: XM_038506271   ⟹   XP_038362199
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1222,218,699 - 2,326,511 (+)NCBI
RefSeq Acc Id: XM_038506272   ⟹   XP_038362200
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1222,254,033 - 2,326,511 (+)NCBI
RefSeq Acc Id: XM_038506273   ⟹   XP_038362201
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1222,254,033 - 2,326,512 (+)NCBI
RefSeq Acc Id: XM_038506274   ⟹   XP_038362202
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1222,254,033 - 2,326,512 (+)NCBI
RefSeq Acc Id: XM_038506275   ⟹   XP_038362203
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1222,218,630 - 2,326,512 (+)NCBI
RefSeq Acc Id: XM_038506276   ⟹   XP_038362204
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1222,264,667 - 2,326,513 (+)NCBI
RefSeq Acc Id: XM_038569462   ⟹   XP_038425390
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0222,286,397 - 2,394,263 (+)NCBI
RefSeq Acc Id: XM_038569463   ⟹   XP_038425391
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0222,286,405 - 2,394,263 (+)NCBI
RefSeq Acc Id: XM_038569464   ⟹   XP_038425392
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0222,321,740 - 2,394,263 (+)NCBI
RefSeq Acc Id: XM_038569466   ⟹   XP_038425394
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0222,321,740 - 2,394,264 (+)NCBI
RefSeq Acc Id: XM_038569467   ⟹   XP_038425395
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0222,321,740 - 2,394,264 (+)NCBI
RefSeq Acc Id: XM_038569468   ⟹   XP_038425396
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0222,286,336 - 2,394,264 (+)NCBI
RefSeq Acc Id: XM_038569469   ⟹   XP_038425397
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0222,332,375 - 2,394,265 (+)NCBI
RefSeq Acc Id: XM_038633629   ⟹   XP_038489557
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0222,268,089 - 2,375,636 (+)NCBI
RefSeq Acc Id: XM_038633630   ⟹   XP_038489558
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0222,268,097 - 2,375,636 (+)NCBI
RefSeq Acc Id: XM_038633631   ⟹   XP_038489559
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0222,303,441 - 2,375,636 (+)NCBI
RefSeq Acc Id: XM_038633632   ⟹   XP_038489560
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0222,303,441 - 2,375,637 (+)NCBI
RefSeq Acc Id: XM_038633633   ⟹   XP_038489561
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0222,303,441 - 2,375,637 (+)NCBI
RefSeq Acc Id: XM_038633634   ⟹   XP_038489562
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0222,268,028 - 2,375,637 (+)NCBI
RefSeq Acc Id: XM_038633635   ⟹   XP_038489563
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0222,314,083 - 2,375,638 (+)NCBI
RefSeq Acc Id: XM_542560   ⟹   XP_542560
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1222,319,239 - 2,426,554 (+)NCBI
Dog10K_Boxer_Tasha222,348,042 - 2,455,898 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005633916 (Get FASTA)   NCBI Sequence Viewer  
  XP_005633917 (Get FASTA)   NCBI Sequence Viewer  
  XP_005633918 (Get FASTA)   NCBI Sequence Viewer  
  XP_005633919 (Get FASTA)   NCBI Sequence Viewer  
  XP_005633921 (Get FASTA)   NCBI Sequence Viewer  
  XP_038286808 (Get FASTA)   NCBI Sequence Viewer  
  XP_038286809 (Get FASTA)   NCBI Sequence Viewer  
  XP_038286810 (Get FASTA)   NCBI Sequence Viewer  
  XP_038286811 (Get FASTA)   NCBI Sequence Viewer  
  XP_038286813 (Get FASTA)   NCBI Sequence Viewer  
  XP_038286814 (Get FASTA)   NCBI Sequence Viewer  
  XP_038286815 (Get FASTA)   NCBI Sequence Viewer  
  XP_038312641 (Get FASTA)   NCBI Sequence Viewer  
  XP_038362198 (Get FASTA)   NCBI Sequence Viewer  
  XP_038362199 (Get FASTA)   NCBI Sequence Viewer  
  XP_038362200 (Get FASTA)   NCBI Sequence Viewer  
  XP_038362201 (Get FASTA)   NCBI Sequence Viewer  
  XP_038362202 (Get FASTA)   NCBI Sequence Viewer  
  XP_038362203 (Get FASTA)   NCBI Sequence Viewer  
  XP_038362204 (Get FASTA)   NCBI Sequence Viewer  
  XP_038425390 (Get FASTA)   NCBI Sequence Viewer  
  XP_038425391 (Get FASTA)   NCBI Sequence Viewer  
  XP_038425392 (Get FASTA)   NCBI Sequence Viewer  
  XP_038425394 (Get FASTA)   NCBI Sequence Viewer  
  XP_038425395 (Get FASTA)   NCBI Sequence Viewer  
  XP_038425396 (Get FASTA)   NCBI Sequence Viewer  
  XP_038425397 (Get FASTA)   NCBI Sequence Viewer  
  XP_038489557 (Get FASTA)   NCBI Sequence Viewer  
  XP_038489558 (Get FASTA)   NCBI Sequence Viewer  
  XP_038489559 (Get FASTA)   NCBI Sequence Viewer  
  XP_038489560 (Get FASTA)   NCBI Sequence Viewer  
  XP_038489561 (Get FASTA)   NCBI Sequence Viewer  
  XP_038489562 (Get FASTA)   NCBI Sequence Viewer  
  XP_038489563 (Get FASTA)   NCBI Sequence Viewer  
  XP_542560 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCAFP00000006581.4
  ENSCAFP00000064713.2
  ENSCAFP00030027757.1
  ENSCAFP00030027828.1
  ENSCAFP00040016010.1
  ENSCAFP00040016081.1
  ENSCAFP00040016146.1
  ENSCAFP00845033275.1
  ENSCAFP00845033337
  ENSCAFP00845033337.1
RefSeq Acc Id: XP_542560   ⟸   XM_542560
- UniProtKB: A0A8C0NVB7 (UniProtKB/TrEMBL),   A0A8C0R4M4 (UniProtKB/TrEMBL),   A0A8I3PQG2 (UniProtKB/TrEMBL),   A0A8P0SA42 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005633916   ⟸   XM_005633859
- UniProtKB: A0A8C0NVB7 (UniProtKB/TrEMBL),   A0A8C0R4M4 (UniProtKB/TrEMBL),   A0A8I3PQG2 (UniProtKB/TrEMBL),   A0A8P0SA42 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005633918   ⟸   XM_005633861
- UniProtKB: A0A8C0NVB7 (UniProtKB/TrEMBL),   A0A8C0R4M4 (UniProtKB/TrEMBL),   A0A8I3PQG2 (UniProtKB/TrEMBL),   A0A8P0SA42 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005633919   ⟸   XM_005633862
- UniProtKB: A0A8C0NVB7 (UniProtKB/TrEMBL),   A0A8C0R4M4 (UniProtKB/TrEMBL),   A0A8I3PQG2 (UniProtKB/TrEMBL),   A0A8P0SA42 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005633917   ⟸   XM_005633860
- UniProtKB: A0A8C0NVB7 (UniProtKB/TrEMBL),   A0A8C0R4M4 (UniProtKB/TrEMBL),   A0A8I3PQG2 (UniProtKB/TrEMBL),   A0A8P0SA42 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005633921   ⟸   XM_005633864
- UniProtKB: A0A8C0NVB7 (UniProtKB/TrEMBL),   A0A8C0R4M4 (UniProtKB/TrEMBL),   A0A8I3PQG2 (UniProtKB/TrEMBL),   A0A8P0SA42 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000064713   ⟸   ENSCAFT00000083554
RefSeq Acc Id: ENSCAFP00000006581   ⟸   ENSCAFT00000007107
RefSeq Acc Id: XP_038362203   ⟸   XM_038506275
RefSeq Acc Id: XP_038362198   ⟸   XM_038506270
RefSeq Acc Id: XP_038362199   ⟸   XM_038506271
RefSeq Acc Id: XP_038362202   ⟸   XM_038506274
RefSeq Acc Id: XP_038362201   ⟸   XM_038506273
RefSeq Acc Id: XP_038362200   ⟸   XM_038506272
RefSeq Acc Id: XP_038362204   ⟸   XM_038506276
RefSeq Acc Id: XP_038489562   ⟸   XM_038633634
RefSeq Acc Id: XP_038489557   ⟸   XM_038633629
RefSeq Acc Id: XP_038489558   ⟸   XM_038633630
RefSeq Acc Id: XP_038489561   ⟸   XM_038633633
RefSeq Acc Id: XP_038489560   ⟸   XM_038633632
RefSeq Acc Id: XP_038489559   ⟸   XM_038633631
RefSeq Acc Id: XP_038489563   ⟸   XM_038633635
RefSeq Acc Id: XP_038286814   ⟸   XM_038430886
- UniProtKB: A0A8C0NVB7 (UniProtKB/TrEMBL),   A0A8C0R4M4 (UniProtKB/TrEMBL),   A0A8I3PQG2 (UniProtKB/TrEMBL),   A0A8P0SA42 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038286808   ⟸   XM_038430880
- UniProtKB: A0A8C0NVB7 (UniProtKB/TrEMBL),   A0A8C0R4M4 (UniProtKB/TrEMBL),   A0A8I3PQG2 (UniProtKB/TrEMBL),   A0A8P0SA42 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038286809   ⟸   XM_038430881
- UniProtKB: A0A8C0NVB7 (UniProtKB/TrEMBL),   A0A8C0R4M4 (UniProtKB/TrEMBL),   A0A8I3PQG2 (UniProtKB/TrEMBL),   A0A8P0SA42 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038286813   ⟸   XM_038430885
- UniProtKB: A0A8C0NVB7 (UniProtKB/TrEMBL),   A0A8C0R4M4 (UniProtKB/TrEMBL),   A0A8I3PQG2 (UniProtKB/TrEMBL),   A0A8P0SA42 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038286811   ⟸   XM_038430883
- UniProtKB: A0A8C0NVB7 (UniProtKB/TrEMBL),   A0A8C0R4M4 (UniProtKB/TrEMBL),   A0A8I3PQG2 (UniProtKB/TrEMBL),   A0A8P0SA42 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038286810   ⟸   XM_038430882
- UniProtKB: A0A8C0NVB7 (UniProtKB/TrEMBL),   A0A8C0R4M4 (UniProtKB/TrEMBL),   A0A8I3PQG2 (UniProtKB/TrEMBL),   A0A8P0SA42 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038286815   ⟸   XM_038430887
- UniProtKB: A0A8C0NVB7 (UniProtKB/TrEMBL),   A0A8C0R4M4 (UniProtKB/TrEMBL),   A0A8I3PQG2 (UniProtKB/TrEMBL),   A0A8P0SA42 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038312641   ⟸   XM_038456713
- UniProtKB: A0A8C0NVB7 (UniProtKB/TrEMBL),   A0A8C0R4M4 (UniProtKB/TrEMBL),   A0A8I3PQG2 (UniProtKB/TrEMBL),   A0A8P0SA42 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038425396   ⟸   XM_038569468
- UniProtKB: A0A8C0NVB7 (UniProtKB/TrEMBL),   A0A8C0R4M4 (UniProtKB/TrEMBL),   A0A8I3PQG2 (UniProtKB/TrEMBL),   A0A8P0SA42 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038425390   ⟸   XM_038569462
- UniProtKB: A0A8C0NVB7 (UniProtKB/TrEMBL),   A0A8C0R4M4 (UniProtKB/TrEMBL),   A0A8I3PQG2 (UniProtKB/TrEMBL),   A0A8P0SA42 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038425391   ⟸   XM_038569463
- UniProtKB: A0A8C0NVB7 (UniProtKB/TrEMBL),   A0A8C0R4M4 (UniProtKB/TrEMBL),   A0A8I3PQG2 (UniProtKB/TrEMBL),   A0A8P0SA42 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038425395   ⟸   XM_038569467
- UniProtKB: A0A8C0NVB7 (UniProtKB/TrEMBL),   A0A8C0R4M4 (UniProtKB/TrEMBL),   A0A8I3PQG2 (UniProtKB/TrEMBL),   A0A8P0SA42 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038425394   ⟸   XM_038569466
- UniProtKB: A0A8C0NVB7 (UniProtKB/TrEMBL),   A0A8C0R4M4 (UniProtKB/TrEMBL),   A0A8I3PQG2 (UniProtKB/TrEMBL),   A0A8P0SA42 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038425392   ⟸   XM_038569464
- UniProtKB: A0A8C0NVB7 (UniProtKB/TrEMBL),   A0A8C0R4M4 (UniProtKB/TrEMBL),   A0A8I3PQG2 (UniProtKB/TrEMBL),   A0A8P0SA42 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038425397   ⟸   XM_038569469
- UniProtKB: A0A8C0NVB7 (UniProtKB/TrEMBL),   A0A8C0R4M4 (UniProtKB/TrEMBL),   A0A8I3PQG2 (UniProtKB/TrEMBL),   A0A8P0SA42 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845033275   ⟸   ENSCAFT00845042445
RefSeq Acc Id: ENSCAFP00845033337   ⟸   ENSCAFT00845042529


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000004408 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030017274 UniProtKB/TrEMBL
  ENSCAFG00040009958 UniProtKB/TrEMBL
  ENSCAFG00845024041 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000007107.5 UniProtKB/TrEMBL
  ENSCAFT00000083554.2 UniProtKB/TrEMBL
  ENSCAFT00030031833.1 UniProtKB/TrEMBL
  ENSCAFT00030031914.1 UniProtKB/TrEMBL
  ENSCAFT00040018441.1 UniProtKB/TrEMBL
  ENSCAFT00040018536.1 UniProtKB/TrEMBL
  ENSCAFT00040018614.1 UniProtKB/TrEMBL
  ENSCAFT00845042445.1 UniProtKB/TrEMBL
  ENSCAFT00845042529 ENTREZGENE
  ENSCAFT00845042529.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.10.10 UniProtKB/TrEMBL
InterPro ARM-like UniProtKB/TrEMBL
  ARM-type_fold UniProtKB/TrEMBL
  Mo25 UniProtKB/TrEMBL
KEGG Report cfa:485442 UniProtKB/TrEMBL
NCBI Gene CAB39L ENTREZGENE
PANTHER CALCIUM-BINDING PROTEIN 39-LIKE UniProtKB/TrEMBL
  PTHR10182 UniProtKB/TrEMBL
Pfam Mo25 UniProtKB/TrEMBL
Superfamily-SCOP SSF48371 UniProtKB/TrEMBL
UniProt A0A8C0NRP1_CANLF UniProtKB/TrEMBL
  A0A8C0NVB7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0R4M4 ENTREZGENE
  A0A8C0S517_CANLF UniProtKB/TrEMBL
  A0A8C0S5X8_CANLF UniProtKB/TrEMBL
  A0A8I3PL47_CANLF UniProtKB/TrEMBL
  A0A8I3PQG2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0SA42 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:38620 ENTREZGENE