CCDC78 (coiled-coil domain containing 78)

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Gene: CCDC78 (coiled-coil domain containing 78) Canis lupus familiaris

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Symbol:

CCDC78

Name:

coiled-coil domain containing 78

RGD ID:

12236133

Description:

INVOLVED IN de novo centriole assembly involved in multi-ciliated epithelial cell differentiation (ortholog); skeletal muscle contraction (ortholog); ASSOCIATED WITH centronuclear myopathy 4 (ortholog); congenital structural myopathy (ortholog); epilepsy (ortholog); FOUND IN centriole (ortholog); cytoplasm (ortholog); deuterosome (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

coiled-coil domain-containing protein 78

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

CanFam3.1 - Dog CanFam3.1 Assembly

Position:

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	6	39,857,182 - 39,861,437 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	6	39,857,304 - 39,875,418 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	6	41,121,770 - 41,126,722 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	6	40,200,243 - 40,205,198 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	6	40,200,450 - 40,204,561 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	6	39,888,852 - 39,893,802 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	6	39,849,066 - 39,854,010 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	6	40,327,941 - 40,332,894 (+)	NCBI		UU_Cfam_GSD_1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

centronuclear myopathy 4 (ISO)

congenital structural myopathy (ISO)

epilepsy (ISO)

genetic disease (ISO)

idiopathic generalized epilepsy (ISO)

short-rib thoracic dysplasia 9 with or without polydactyly (ISO)

tuberous sclerosis 2 (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

de novo centriole assembly involved in multi-ciliated epithelial cell differentiation (ISO)

skeletal muscle contraction (ISO)

Cellular Component

centriole (ISO)

cytoplasm (ISO)

deuterosome (ISO)

perinuclear region of cytoplasm (ISO)

sarcolemma (ISO)

sarcoplasmic reticulum (ISO)

Molecular Function

protein binding (ISO)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

CCDC78
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	6	39,857,182 - 39,861,437 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	6	39,857,304 - 39,875,418 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	6	41,121,770 - 41,126,722 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	6	40,200,243 - 40,205,198 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	6	40,200,450 - 40,204,561 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	6	39,888,852 - 39,893,802 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	6	39,849,066 - 39,854,010 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	6	40,327,941 - 40,332,894 (+)	NCBI		UU_Cfam_GSD_1.0

CCDC78
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	16	722,582 - 726,880 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	16	722,582 - 726,954 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	16	772,582 - 776,880 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	16	712,583 - 716,460 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	16	972,747 - 976,638 (-)	NCBI		Celera
Cytogenetic Map	16	p13.3	NCBI
HuRef	16	694,483 - 698,374 (-)	NCBI		HuRef
CHM1_1	16	772,552 - 776,443 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	16	726,756 - 731,054 (-)	NCBI		T2T-CHM13v2.0

Ccdc78
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	17	26,005,554 - 26,009,487 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	17	26,005,554 - 26,009,487 (+)	Ensembl		GRCm39 Ensembl
GRCm38	17	25,786,580 - 25,790,513 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	17	25,786,580 - 25,790,513 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	17	25,923,525 - 25,927,458 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	17	25,514,180 - 25,518,113 (+)	NCBI		MGSCv36	mm8
Celera	17	26,319,386 - 26,323,319 (+)	NCBI		Celera
Cytogenetic Map	17	A3.3	NCBI
cM Map	17	12.89	NCBI

Ccdc78
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	15,312,403 - 15,316,800 (+)	NCBI		GRCr8
mRatBN7.2	10	14,808,355 - 14,812,284 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	14,807,710 - 14,812,282 (+)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	10	15,155,839 - 15,160,039 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	15,156,207 - 15,159,894 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	14,969,092 - 14,972,982 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	15,052,949 - 15,064,350 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	10	14,477,059 - 14,481,260 (+)	NCBI		Celera
Cytogenetic Map	10	q12	NCBI

Ccdc78
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955442	16,478,795 - 16,482,263 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955442	16,478,219 - 16,482,452 (+)	NCBI	ChiLan1.0	ChiLan1.0

CCDC78
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	18	963,198 - 967,657 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	16	4,747,036 - 4,751,251 (-)	NCBI		NHGRI_mPanPan1
PanPan1.1	16	735,786 - 740,155 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	16	735,974 - 739,572 (-)	Ensembl	panpan1.1		panPan2

Ccdc78
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	112,192,468 - 112,196,469 (+)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936501	289,765 - 294,272 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CCDC78
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	41,053,936 - 41,057,734 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	3	41,053,926 - 41,057,735 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	3	41,420,178 - 41,424,583 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CCDC78
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	5	642,500 - 646,337 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666068	30,489,336 - 30,493,389 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ccdc78
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624913	1,531,511 - 1,535,067 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624913	1,531,325 - 1,535,637 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in CCDC78
33 total Variants

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

adipose tissue	alimentary part of gastrointestinal system	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	reproductive system	respiratory system
6	5	5	23	22	16	6	6	6	6	33	22	12	14	10

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005621740	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005621741	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005621742	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005621744	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_014114728	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038479612	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038479613	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038479614	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038479615	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038540886	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038540887	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038540888	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038540889	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038605011	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038605012	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038605013	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038605014	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038669686	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038669687	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038669688	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038669689	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005327079	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005360994	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005395534	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005428693	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_292519	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AAEX04000006	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAHUQ010000076	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAQRD010000090	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAUVH010000065	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	REHQ01000006	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCAFT00000031182 ⟹ ENSCAFP00000029014

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	6	39,857,304 - 39,861,409 (+)	Ensembl

Ensembl Acc Id:

ENSCAFT00000072840 ⟹ ENSCAFP00000049760

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	6	39,857,304 - 39,875,418 (+)	Ensembl

Ensembl Acc Id:

ENSCAFT00000077889 ⟹ ENSCAFP00000065600

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	6	39,857,304 - 39,861,409 (+)	Ensembl

Ensembl Acc Id:

ENSCAFT00000085376 ⟹ ENSCAFP00000051587

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	6	39,857,304 - 39,861,409 (+)	Ensembl

Ensembl Acc Id:

ENSCAFT00845046540 ⟹ ENSCAFP00845036535

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	6	40,200,450 - 40,204,561 (+)	Ensembl

Ensembl Acc Id:

ENSCAFT00845046668 ⟹ ENSCAFP00845036628

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	6	40,200,450 - 40,204,561 (+)	Ensembl

RefSeq Acc Id:

XM_005621740 ⟹ XP_005621797

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	6	39,857,182 - 39,861,437 (+)	NCBI
Dog10K_Boxer_Tasha	6	41,121,778 - 41,126,110 (+)	NCBI

Sequence:

show sequence

CCTCCGGGGGGGGCGGGGAAGTCCGTCCGCCGGCACAACCGGAAAGGTCGGCGCCTACTGTGGG
AAGCCCCGCGCAGCGCAGGGCCCCGCTGCTTCTGTGCTCGCTGCTTCGCCTGGGACTTATGCGC
TCCCGGGTCCGCCCAGCGGTACCCGGGATAAGGGCGGAGGTGCCGGCGTGCACCTCCCGGATGA
GAAAACGAACCCGGACAGGATGGGGCTGCACAGGGAATGAGCCGAGAGGCCGCCTCCCTGGCCA
CCCAACTGCCCCGGCTGCCCTCGCGGGTGGGGGAGACCAACAGAGGCCTTGGCAACGCAAGCCA
GTGTGGCGGCAACGGGCCCGGAGGCGAGGCGGCCCGCCCTTGGGGTGGCCACAGTTCCTTCTGC
CCATGGAGCGCGCTGCAGCCACCAGGCCGGGGCCCTCACCCGGGGCCGCTGAGAATGGCATGGG
GGTGCCTCCCCAGGTTCTGCCCCAAGCCGAGGACTGGACAGCCAGCCTCAAGACAGAGCTTCCC
TCAGATCTAGAGCTGAGTGAGGAGCAGCGACTGCAGATCTCCAAGGAGTTGGTCGACCTGCAGA
TCACAACTCTTCAGCTGCGGGAGCAGCATGAGGCCGAAGTCTTTGAGCTGAAGAATGAGGTCCT
ACGGCTGGAGAGCCGGGTGCTGGAGCTGGAGCTGCAGCTGCATGGAGCTCGTACTGACCTGGGG
CACTGCCAGGAGCTGGCACCGGGGCTGCAGCACAAGGCCCCAGAGCAGGGACACTCCACTCACC
ACAGGCCCCAGGTCGCCTTGAGTGCATGGAGGGGCCGGCTGGGTGGGAGCCCAGCAGGGGCCCA
GCAGAGGCACAGCGAGGTCGGGACTGGCATTCTCGTACAGGCACAGCCTGAGGACTTCCCAGCC
CCCGAGCATCAACAGCAGAAGCTGGGGGACGGTGTGGGTGCGCAGCCTCGTGGCTTGGGGCTCT
GTCCAGATCTCCCCCAGCCCATGGTGGTGTTGGGCAGTGCCAGGATCCCAGAGCCTGGGGTCTC
CGCCAGCCAGCCCTGGCGCACCCCGCAGCTGCAGGGAGAATGGAAGCGAGTGCTGGAGCAGCAC
AAGGCCCAGAAGCAGGTGCTGGAGGCCCGTGTAGCGGACCTGGGCTGGCGGCTGCAGGGGGCGC
GAGCAGAGGCCAGGACAGCTGGGCAGCGACTAGCTGCACAAGCCATGGGCTACCCCCGCCGCCC
CCAGGTGTTGTCTGCCTGCCAAGGTCAGCTCCGCCAGGCCGAGGTGGAGAACGCCCAGCTGCAG
CTGCAGCTCAAGAAGCTGAACGAGGAGTATGCCTTCCAGCTGCAGCGATGTGCCCAAGCTGTGG
CCGAGTACACCAACCGGGCGGGCCAGGTGCCCGCAGCCGCAGCCCTTCGCACGTTCCTGGAGAC
CACTCTGGAGGACATCCGGGCAGCGCACCGCAGCCGTGAGCAGCAGTTGGCCCGGGCTGCTCGT
GCCTACCGCAAGCGCCTGGCAGATCTAAGCCGTAGGCACCAGGAGCTGCTGGCTGCCCACAGTG
TGCAGCAGGTGCTGGCAGGCCCCAGTGGGGCACACGGGACCCCCAAAGCTACCTTTGAGGCAGC
CACCTCCGACCTGGAGTCTCTGCACCTGGCTCCCGCACTTGGTCACCCAGGAGAAGACCAGGCC
AGGCTGCAGACCGAGCTCCAGAAGCTCCAGGCCCAGAAGGGGCCCAGGGAAGCCTCCCAGGGGG
GCAGCACGCTAGAGCCACAGGCCCAGGAAGCTGCTTCCTGGGCCCAGATCCACCAGAAGCTCCA
GGACTTCTCCCGTGGTACCCAGGCAGAGCTGGAACGCGAGCGGGCACAGCTACTAGTACGGGCC
ACGATGGCCGAGGAGCAACTTTCTGAGCTACAGGAGTACGTGGACCAGCACCTAGGCAGGTACA
AACAGGAGATCCTGAGGCTGAGGAAGCTGACGGGTACGGAGGACGCCTGGAAAGTGGGGGCCAC
ACCTTCAGTGAAGCCCCAGCACCTGAAGACCCAAAGCCGCTAGCCAGTTGTCAAACCACAGCAG
AACTCTTCACAGCCAGCGTGGAGGCCTCCCCACTGCACCTCCTTGGGGTGGGGGTCATTCCTCT
CAGCCCTCCACCTAACAAGAGTCAGGACGTA

hide sequence

RefSeq Acc Id:

XM_005621741 ⟹ XP_005621798

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	6	39,857,182 - 39,861,437 (+)	NCBI
Dog10K_Boxer_Tasha	6	41,121,778 - 41,126,110 (+)	NCBI

Sequence:

show sequence

CCTCCGGGGGGGGCGGGGAAGTCCGTCCGCCGGCACAACCGGAAAGGTCGGCGCCTACTGTGGG
AAGCCCCGCGCAGCGCAGGGCCCCGCTGCTTCTGTGCTCGCTGCTTCGCCTGGGACTTATGCGC
TCCCGGGTCCGCCCAGCGGTACCCGGGATAAGGGCGGAGGTGCCGGCGTGCACCTCCCGGATGA
GAAAACGAACCCGGACAGGATGGGGCTGCACAGGGAATGAGCCGAGAGGCCGCCTCCCTGGCCA
CCCAACTGCCCCGGCTGCCCTCGCGGGTGGGGGAGACCAACAGAGGCCTTGGCAACGCAAGCCA
GTGTGGCGGCAACGGGCCCGGAGGCGAGGCGGCCCGCCCTTGGGGTGGCCACAGTTCCTTCTGC
CCATGGAGCGCGCTGCAGCCACCAGGCCGGGGCCCTCACCCGGGGCCGCTGAGAATGTTCTGCC
CCAAGCCGAGGACTGGACAGCCAGCCTCAAGACAGAGCTTCCCTCAGATCTAGAGCTGAGTGAG
GAGCAGCGACTGCAGATCTCCAAGGAGTTGGTCGACCTGCAGATCACAACTCTTCAGCTGCGGG
AGCAGCATGAGGCCGAAGTCTTTGAGCTGAAGAATGAGGTCCTACGGCTGGAGAGCCGGGTGCT
GGAGCTGGAGCTGCAGCTGCATGGAGCTCGTACTGACCTGGGGCACTGCCAGGAGCTGGCACCG
GGGCTGCAGCACAAGGCCCCAGAGCAGGGACACTCCACTCACCACAGGCCCCAGGTCGCCTTGA
GTGCATGGAGGGGCCGGCTGGGTGGGAGCCCAGCAGGGGCCCAGCAGAGGCACAGCGAGGTCGG
GACTGGCATTCTCGTACAGGCACAGCCTGAGGACTTCCCAGCCCCCGAGCATCAACAGCAGAAG
CTGGGGGACGGTGTGGGTGCGCAGCCTCGTGGCTTGGGGCTCTGTCCAGATCTCCCCCAGCCCA
TGGTGGTGTTGGGCAGTGCCAGGATCCCAGAGCCTGGGGTCTCCGCCAGCCAGCCCTGGCGCAC
CCCGCAGCTGCAGGGAGAATGGAAGCGAGTGCTGGAGCAGCACAAGGCCCAGAAGCAGGTGCTG
GAGGCCCGTGTAGCGGACCTGGGCTGGCGGCTGCAGGGGGCGCGAGCAGAGGCCAGGACAGCTG
GGCAGCGACTAGCTGCACAAGCCATGGGCTACCCCCGCCGCCCCCAGGTGTTGTCTGCCTGCCA
AGGTCAGCTCCGCCAGGCCGAGGTGGAGAACGCCCAGCTGCAGCTGCAGCTCAAGAAGCTGAAC
GAGGAGTATGCCTTCCAGCTGCAGCGATGTGCCCAAGCTGTGGCCGAGTACACCAACCGGGCGG
GCCAGGTGCCCGCAGCCGCAGCCCTTCGCACGTTCCTGGAGACCACTCTGGAGGACATCCGGGC
AGCGCACCGCAGCCGTGAGCAGCAGTTGGCCCGGGCTGCTCGTGCCTACCGCAAGCGCCTGGCA
GATCTAAGCCGTAGGCACCAGGAGCTGCTGGCTGCCCACAGTGTGCAGCAGGTGCTGGCAGGCC
CCAGTGGGGCACACGGGACCCCCAAAGCTACCTTTGAGGCAGCCACCTCCGACCTGGAGTCTCT
GCACCTGGCTCCCGCACTTGGTCACCCAGGAGAAGACCAGGCCAGGCTGCAGACCGAGCTCCAG
AAGCTCCAGGCCCAGAAGGGGCCCAGGGAAGCCTCCCAGGGGGGCAGCACGCTAGAGCCACAGG
CCCAGGAAGCTGCTTCCTGGGCCCAGATCCACCAGAAGCTCCAGGACTTCTCCCGTGGTACCCA
GGCAGAGCTGGAACGCGAGCGGGCACAGCTACTAGTACGGGCCACGATGGCCGAGGAGCAACTT
TCTGAGCTACAGGAGTACGTGGACCAGCACCTAGGCAGGTACAAACAGGAGATCCTGAGGCTGA
GGAAGCTGACGGGTACGGAGGACGCCTGGAAAGTGGGGGCCACACCTTCAGTGAAGCCCCAGCA
CCTGAAGACCCAAAGCCGCTAGCCAGTTGTCAAACCACAGCAGAACTCTTCACAGCCAGCGTGG
AGGCCTCCCCACTGCACCTCCTTGGGGTGGGGGTCATTCCTCTCAGCCCTCCACCTAACAAGAG
TCAGGACGTA

hide sequence

RefSeq Acc Id:

XM_005621742 ⟹ XP_005621799

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	6	39,857,182 - 39,861,437 (+)	NCBI
Dog10K_Boxer_Tasha	6	41,121,779 - 41,126,110 (+)	NCBI

Sequence:

show sequence

CCTCCGGGGGGGGCGGGGAAGTCCGTCCGCCGGCACAACCGGAAAGGTCGGCGCCTACTGTGGG
AAGCCCCGCGCAGCGCAGGGCCCCGCTGCTTCTGTGCTCGCTGCTTCGCCTGGGACTTATGCGC
TCCCGGGTCCGCCCAGCGGTACCCGGGATAAGGGCGGAGGTGCCGGCGTGCACCTCCCGGATGA
GAAAACGAACCCGGACAGGATGGGGCTGCACAGGGAATGAGCCGAGAGGCCGCCTCCCTGGCCA
CCCAACTGCCCCGGCTGCCCTCGCGGGTGGGGGAGACCAACAGAGGCCTTGGCAACGCAAGCCA
GTGTGGCGGCAACGGGCCCGGAGGCGAGGCGGCCCGCCCTTGGGGTGGCCACAGTTCCTTCTGC
CCATGGAGCGCGCTGCAGCCACCAGGCCGGGGCCCTCACCCGGGGCCGCTGAGAATGGCATGGG
GGTGCCTCCCCAGGTTCTGCCCCAAGCCGAGGACTGGACAGCCAGCCTCAAGACAGAGCTTCCC
TCAGATCTAGAGCTGAGTGAGGAGCAGCGACTGCAGATCTCCAAGGAGTTGGTCGACCTGCAGA
TCACAACTCTTCAGCTGCGGGAGCAGCATGAGGCCGAAGTCTTTGAGCTGAAGAATGAGGTCCT
ACGGCTGGAGAGCCGGGTGCTGGAGCTGGAGCTGCAGCTGCATGGAGCTCGTACTGACCTGGGG
CACTGCCAGGAGCTGGCACCGGGGCTGCAGCACAAGGCCCCAGAGCAGGGACACTCCACTCACC
ACAGGCCCCAGGTCGCCTTGAGTGCATGGAGGGGCCGGCTGGGTGGGAGCCCAGCAGGGGCCCA
GCAGAGGCACAGCGAGGTCGGGACTGGCATTCTCGTACAGGCACAGCCTGAGGACTTCCCAGCC
CCCGAGCATCAACAGCAGAAGCTGGGGGACGGTGTGGGTGCGCAGCCTCGTGGCTTGGGGCTCT
GTCCAGATCTCCCCCAGCCCATGGTGGTGTTGGGCAGTGCCAGGATCCCAGAGCCTGGGGTCTC
CGCCAGCCAGCCCTGGCGCACCCCGCAGCTGCAGGGAGAATGGAAGCGAGTGCTGGAGCAGCAC
AAGGCCCAGAAGCAGGTGCTGGAGGCCCGTGTAGCGGACCTGGGCTGGCGGCTGCAGGGGGCGC
GAGCAGAGGCCAGGACAGCTGGGCAGCGACTAGCTGCACAAGCCATGGTGTTGTCTGCCTGCCA
AGGTCAGCTCCGCCAGGCCGAGGTGGAGAACGCCCAGCTGCAGCTGCAGCTCAAGAAGCTGAAC
GAGGAGTATGCCTTCCAGCTGCAGCGATGTGCCCAAGCTGTGGCCGAGTACACCAACCGGGCGG
GCCAGGTGCCCGCAGCCGCAGCCCTTCGCACGTTCCTGGAGACCACTCTGGAGGACATCCGGGC
AGCGCACCGCAGCCGTGAGCAGCAGTTGGCCCGGGCTGCTCGTGCCTACCGCAAGCGCCTGGCA
GATCTAAGCCGTAGGCACCAGGAGCTGCTGGCTGCCCACAGTGTGCAGCAGGTGCTGGCAGGCC
CCAGTGGGGCACACGGGACCCCCAAAGCTACCTTTGAGGCAGCCACCTCCGACCTGGAGTCTCT
GCACCTGGCTCCCGCACTTGGTCACCCAGGAGAAGACCAGGCCAGGCTGCAGACCGAGCTCCAG
AAGCTCCAGGCCCAGAAGGGGCCCAGGGAAGCCTCCCAGGGGGGCAGCACGCTAGAGCCACAGG
CCCAGGAAGCTGCTTCCTGGGCCCAGATCCACCAGAAGCTCCAGGACTTCTCCCGTGGTACCCA
GGCAGAGCTGGAACGCGAGCGGGCACAGCTACTAGTACGGGCCACGATGGCCGAGGAGCAACTT
TCTGAGCTACAGGAGTACGTGGACCAGCACCTAGGCAGGTACAAACAGGAGATCCTGAGGCTGA
GGAAGCTGACGGGTACGGAGGACGCCTGGAAAGTGGGGGCCACACCTTCAGTGAAGCCCCAGCA
CCTGAAGACCCAAAGCCGCTAGCCAGTTGTCAAACCACAGCAGAACTCTTCACAGCCAGCGTGG
AGGCCTCCCCACTGCACCTCCTTGGGGTGGGGGTCATTCCTCTCAGCCCTCCACCTAACAAGAG
TCAGGACGTA

hide sequence

RefSeq Acc Id:

XM_005621744 ⟹ XP_005621801

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	6	39,857,182 - 39,861,350 (+)	NCBI
Dog10K_Boxer_Tasha	6	41,121,771 - 41,126,721 (+)	NCBI

Sequence:

show sequence

CCTCCGGGGGGGGCGGGGAAGTCCGTCCGCCGGCACAACCGGAAAGGTCGGCGCCTACTGTGGG
AAGCCCCGCGCAGCGCAGGGCCCCGCTGCTTCTGTGCTCGCTGCTTCGCCTGGGACTTATGCGC
TCCCGGGTCCGCCCAGCGGTACCCGGGATAAGGGCGGAGGTGCCGGCGTGCACCTCCCGGATGA
GAAAACGAACCCGGACAGGATGGGGCTGCACAGGGAATGAGCCGAGAGGCCGCCTCCCTGGCCA
CCCAACTGCCCCGGCTGCCCTCGCGGGTGGGGGAGACCAACAGAGGCCTTGGCAACGCAAGCCA
GTGTGGCGGCAACGGGCCCGGAGGCGAGGCGGCCCGCCCTTGGGGTGGCCACAGTTCCTTCTGC
CCATGGAGCGCGCTGCAGCCACCAGGCCGGGGCCCTCACCCGGGGCCGCTGAGAATGGCATGGG
GGTGCCTCCCCAGGTTCTGCCCCAAGCCGAGGACTGGACAGCCAGCCTCAAGACAGAGCTTCCC
TCAGATCTAGAGCTGAGTGAGGAGCAGCGACTGCAGATCTCCAAGGAGTTGGTCGACCTGCAGA
TCACAACTCTTCAGCTGCGGGAGCAGCATGAGGCCGAAGTCTTTGAGCTGAAGAATGAGGTCCT
ACGGCTGGAGAGCCGGGTGCTGGAGCTGGAGCTGCAGCTGCATGGAGCTCGTACTGACCTGGGG
CACTGCCAGGAGCTGGCACCGGGGCTGCAGCACAAGGCCCCAGAGCAGGGACACTCCACTCACC
ACAGGCCCCAGGTCGCCTTGAGTGCATGGAGGGGCCGGCTGGGTGGGAGCCCAGCAGGGGCCCA
GCAGAGGCACAGCGAGGTCGGGACTGGCATTCTCGTACAGGCACAGCCTGAGGACTTCCCAGCC
CCCGAGCATCAACAGCAGAAGCTGGGGGACGGTGTGGGTGCGCAGCCTCGTGGCTTGGGGCTCT
GTCCAGATCTCCCCCAGCCCATGGTGGTGTTGGGCAGTGCCAGGATCCCAGAGCCTGGGGTCTC
CGCCAGCCAGCCCTGGCGCACCCCGCAGCTGCAGGGAGAATGGAAGCGAGTGCTGGAGCAGCAC
AAGGCCCAGAAGCAGGTGCTGGAGGCCCGTGTAGCGGACCTGGGCTGGCGGCTGCAGGGGGCGC
GAGCAGAGGCCAGGACAGCTGGGCAGCGACTAGCTGCACAAGCCATGGGCTACCCCCGCCGCCC
CCAGGTGTTGTCTGCCTGCCAAGGTCAGCTCCGCCAGGCCGAGGTGGAGAACGCCCAGCTGCAG
CTGCAGCTCAAGAAGCTGAACGAGGAGTATGCCTTCCAGCTGCAGCGATGTGCCCAAGCTGTGG
CCGAGTACACCAACCGGGCGGGCCAGGTGCCCGCAGCCGCAGCCCTTCGCACGTTCCTGGAGAC
CACTCTGGAGGACATCCGGGCAGCGCACCGCAGCCGTGAGCAGCAGTTGGCCCGGGCTGCTCGT
GCCTACCGCAAGCGCCTGGCAGATCTAAGCCGTAGGCACCAGGAGCTGCTGGCTGCCCACAGTG
TGCAGCAGGTGCTGGCAGGCCCCAGTGGGGCACACGGGACCCCCAAAGCTACCTTTGAGGCAGC
CACCTCCGACCTGGAGTCTCTGCACCTGGCTCCCGCACTTGGTCACCCAGGAGAAGACCAGGCC
AGGCTGCAGACCGAGCTCCAGAAGCTCCAGGCCCAGAAGGGGCCCAGGGAAGCCTCCCAGGGGG
GCAGCACGCTAGAGCCACAGGCCCAGGAAGCTGCTTCCTGGGCCCAGATCCACCAGAAGCTCCA
GGACTTCTCCCGTGGTACCCAGCTGACACCTTCCCCCATGCCAGGCAGAGCTGGAACGCGAGCG
GGCACAGCTACTAGTACGGGCCACGATGGCCGAGGAGCAACTTTCTGAGCTACAGGAGTACGTG
GACCAGCACCTAGGCAGGTACAAACAGGAGATCCTGAGGCTGAGGAAGCTGACGGGTACGGAGG
ACGCCTGGAAAGTGGGGGCCACACCTTCAGTGAAGCCCCAGCACCTGAAGACCCAAAGCCGCTA
GCCAGTTGTCAAACCACAGCAGAACTCTTC

hide sequence

RefSeq Acc Id:

XM_038479612 ⟹ XP_038335540

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	6	39,888,860 - 39,893,190 (+)	NCBI

RefSeq Acc Id:

XM_038479613 ⟹ XP_038335541

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	6	39,888,861 - 39,893,190 (+)	NCBI

RefSeq Acc Id:

XM_038479614 ⟹ XP_038335542

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	6	39,888,860 - 39,893,190 (+)	NCBI

RefSeq Acc Id:

XM_038479615 ⟹ XP_038335543

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	6	39,888,853 - 39,893,801 (+)	NCBI

RefSeq Acc Id:

XM_038540886 ⟹ XP_038396814

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	6	40,327,949 - 40,332,282 (+)	NCBI

RefSeq Acc Id:

XM_038540887 ⟹ XP_038396815

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	6	40,327,950 - 40,332,282 (+)	NCBI

RefSeq Acc Id:

XM_038540888 ⟹ XP_038396816

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	6	40,327,949 - 40,332,282 (+)	NCBI

RefSeq Acc Id:

XM_038540889 ⟹ XP_038396817

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	6	40,327,942 - 40,332,893 (+)	NCBI

RefSeq Acc Id:

XM_038605011 ⟹ XP_038460939

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	6	39,849,074 - 39,853,398 (+)	NCBI

RefSeq Acc Id:

XM_038605012 ⟹ XP_038460940

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	6	39,849,075 - 39,853,398 (+)	NCBI

RefSeq Acc Id:

XM_038605013 ⟹ XP_038460941

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	6	39,849,074 - 39,853,398 (+)	NCBI

RefSeq Acc Id:

XM_038605014 ⟹ XP_038460942

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	6	39,849,067 - 39,854,009 (+)	NCBI

RefSeq Acc Id:

XM_038669686 ⟹ XP_038525614

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	6	40,200,251 - 40,204,586 (+)	NCBI

RefSeq Acc Id:

XM_038669687 ⟹ XP_038525615

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	6	40,200,252 - 40,204,586 (+)	NCBI

RefSeq Acc Id:

XM_038669688 ⟹ XP_038525616

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	6	40,200,251 - 40,204,586 (+)	NCBI

RefSeq Acc Id:

XM_038669689 ⟹ XP_038525617

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	6	40,200,244 - 40,205,197 (+)	NCBI

RefSeq Acc Id:

XR_005327079

Type:

NON-CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	6	39,888,852 - 39,893,802 (+)	NCBI

RefSeq Acc Id:

XR_005360994

Type:

NON-CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	6	40,327,941 - 40,332,894 (+)	NCBI

RefSeq Acc Id:

XR_005395534

Type:

NON-CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	6	39,849,066 - 39,854,010 (+)	NCBI

RefSeq Acc Id:

XR_005428693

Type:

NON-CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	6	40,200,243 - 40,205,198 (+)	NCBI

RefSeq Acc Id:

XR_292519

Type:

NON-CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	6	39,857,182 - 39,861,350 (+)	NCBI
Dog10K_Boxer_Tasha	6	41,121,770 - 41,126,722 (+)	NCBI

Sequence:

show sequence

CCTCCGGGGGGGGCGGGGAAGTCCGTCCGCCGGCACAACCGGAAAGGTCGGCGCCTACTGTGGG
AAGCCCCGCGCAGCGCAGGGCCCCGCTGCTTCTGTGCTCGCTGCTTCGCCTGGGACTTATGCGC
TCCCGGGTCCGCCCAGCGGTACCCGGGATAAGGGCGGAGGTGCCGGCGTGCACCTCCCGGATGA
GAAAACGAACCCGGACAGGATGGGGCTGCACAGGGAATGAGCCGAGAGGCCGCCTCCCTGGCCA
CCCAACTGCCCCGGCTGCCCTCGCGGGTGGGGGAGACCAACAGAGGCCTTGGCAACGCAAGCCA
GTGTGGCGGCAACGGGCCCGGAGGCGAGGCGGCCCGCCCTTGGGGTGGCCACAGTTCCTTCTGC
CCATGGAGCGCGCTGCAGCCACCAGGCCGGGGCCCTCACCCGGGGCCGCTGAGAATGGCATGGG
GGTGCCTCCCCAGGTTCTGCCCCAAGCCGAGGACTGGACAGCCAGCCTCAAGACAGAGCTTCCC
TCAGATCTAGAGCTGAGTGAGGAGCAGCGACTGCAGATCTCCAAGGAGTTGGTCGACCTGCAGA
TCACAACTCTTCAGCTGCGGGAGCAGCATGAGGCCGAAGTCTTTGAGCTGAAGAATGAGGTCCT
ACGGCTGGAGAGCCGGGTGCTGGAGCTGGAGCTGCAGCTGCATGGAGCTCGTACTGACCTGGGG
CACTGCCAGGAGCTGGCACCGGGGCTGCAGCACAAGGCCCCAGAGCAGGGACACTCCACTCACC
ACAGGCCCCAGGTCGCCTTGAGTGCATGGAGGGGCCGGCTGGGTGGGAGCCCAGCAGGGGCCCA
GCAGAGGCACAGCGAGGTCGGGACTGGCATTCTCGTACAGGCACAGCCTGAGGACTTCCCAGCC
CCCGAGCATCAACAGCAGAAGCTGGGGGACGGTGTGGGTGCGCAGCCTCGTGGCTTGGGGCTCT
GTCCAGATCTCCCCCAGCCCATGGTGGTGTTGGGCAGTGCCAGGATCCCAGAGCCTGGGGTCTC
CGCCAGCCAGCCCTGGCGCACCCCGCAGCTGCAGGGAGAATGGAAGCGAGTGCTGGAGCAGCAC
AAGGCCCAGAAGCAGGTGCTGGAGGCCCGTGTAGCGGACCTGGGCTGGCGGCTGCAGGGGGCGC
GAGCAGAGGCCAGGACAGCTGGGCAGCGACTAGCTGCACAAGCCATGGGCTACCCCCGCCGCCC
CCAGGTGTTGTCTGCCTGCCAAGGTCAGCTCCGCCAGGCCGAGGTGGAGAACGCCCAGCTGCAG
CTGCAGCTCAAGAAGCTGAACGAGGAGTATGCCTTCCAGCTGCAGCGATGTGCCCAAGCTGTGG
CCGAGTACACCAACCGGGCGGGCCAGGTGCCCGCAGCCGCAGCCCTTCGCACGTTCCTGGAGAC
CACTCTGGAGGACATCCGGGCAGCGCACCGCAGCCGTGAGCAGCAGTTGGCCCGGGCTGCTCGT
GCCTACCGCAAGCGCCTGGCAGATCTAAGCCGTAGGCACCAGGAGCTGCTGGCTGCCCACAGTG
TGCAGCAGGTGCTGGCAGGCCCCAGTGGGGCACACGGGACCCCCAAAGCTACCTTTGAGGCAGC
CACCTCCGACCTGGAGTCTCTGCACCTGGCTCCCGCACTTGGTCACCCAGGAGAAGACCAGGCC
AGGCTGCAGACCGAGCTCCAGAAGCTCCAGGCCCAGAAGGGGCCCAGGGAAGCCTCCCAGGGGG
GCAGCACGCTAGAGCCACAGGCCCAGGAAGCTGCTTCCTGGGCCCAGATCCACCAGAAGCTCCA
GGACTTCTCCCGTGGTACCCAGAGCTGGAACGCGAGCGGGCACAGCTACTAGTACGGGCCACGA
TGGCCGAGGAGCAACTTTCTGAGCTACAGGAGTACGTGGACCAGCACCTAGGCAGGTACAAACA
GGAGATCCTGAGGCTGAGGAAGCTGACGGGTACGGAGGACGCCTGGAAAGTGGGGGCCACACCT
TCAGTGAAGCCCCAGCACCTGAAGACCCAAAGCCGCTAGCCAGTTGTCAAACCACAGCAGAACT
CTTC

hide sequence

Protein Sequences


Protein RefSeqs	XP_005621797	(Get FASTA)	NCBI Sequence Viewer
	XP_005621798	(Get FASTA)	NCBI Sequence Viewer
	XP_005621799	(Get FASTA)	NCBI Sequence Viewer
	XP_005621801	(Get FASTA)	NCBI Sequence Viewer
	XP_038335540	(Get FASTA)	NCBI Sequence Viewer
	XP_038335541	(Get FASTA)	NCBI Sequence Viewer
	XP_038335542	(Get FASTA)	NCBI Sequence Viewer
	XP_038335543	(Get FASTA)	NCBI Sequence Viewer
	XP_038396814	(Get FASTA)	NCBI Sequence Viewer
	XP_038396815	(Get FASTA)	NCBI Sequence Viewer
	XP_038396816	(Get FASTA)	NCBI Sequence Viewer
	XP_038396817	(Get FASTA)	NCBI Sequence Viewer
	XP_038460939	(Get FASTA)	NCBI Sequence Viewer
	XP_038460940	(Get FASTA)	NCBI Sequence Viewer
	XP_038460941	(Get FASTA)	NCBI Sequence Viewer
	XP_038460942	(Get FASTA)	NCBI Sequence Viewer
	XP_038525614	(Get FASTA)	NCBI Sequence Viewer
	XP_038525615	(Get FASTA)	NCBI Sequence Viewer
	XP_038525616	(Get FASTA)	NCBI Sequence Viewer
	XP_038525617	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCAFP00000029014.3
	ENSCAFP00000051587.1
	ENSCAFP00000065600.1
	ENSCAFP00030021150.1
	ENSCAFP00030021222.1
	ENSCAFP00030021301.1
	ENSCAFP00040005490.1
	ENSCAFP00040005507.1
	ENSCAFP00040005526.1
	ENSCAFP00845036535
	ENSCAFP00845036535.1
	ENSCAFP00845036628.1

RefSeq Acc Id:	XP_005621797 ⟸ XM_005621740
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0K4X6 (UniProtKB/TrEMBL), A0A8C0RWS7 (UniProtKB/TrEMBL), A0A8I3PWG7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MRSRVRPAVPGIRAEVPACTSRMRKRTRTGWGCTGNEPRGRLPGHPTAPAALAGGGDQQRPWQR KPVWRQRARRRGGPPLGWPQFLLPMERAAATRPGPSPGAAENGMGVPPQVLPQAEDWTASLKTE LPSDLELSEEQRLQISKELVDLQITTLQLREQHEAEVFELKNEVLRLESRVLELELQLHGARTD LGHCQELAPGLQHKAPEQGHSTHHRPQVALSAWRGRLGGSPAGAQQRHSEVGTGILVQAQPEDF PAPEHQQQKLGDGVGAQPRGLGLCPDLPQPMVVLGSARIPEPGVSASQPWRTPQLQGEWKRVLE QHKAQKQVLEARVADLGWRLQGARAEARTAGQRLAAQAMGYPRRPQVLSACQGQLRQAEVENAQ LQLQLKKLNEEYAFQLQRCAQAVAEYTNRAGQVPAAAALRTFLETTLEDIRAAHRSREQQLARA ARAYRKRLADLSRRHQELLAAHSVQQVLAGPSGAHGTPKATFEAATSDLESLHLAPALGHPGED QARLQTELQKLQAQKGPREASQGGSTLEPQAQEAASWAQIHQKLQDFSRGTQAELERERAQLLV RATMAEEQLSELQEYVDQHLGRYKQEILRLRKLTGTEDAWKVGATPSVKPQHLKTQSR hide sequence

RefSeq Acc Id:	XP_005621799 ⟸ XM_005621742
- Peptide Label:	isoform X2
- UniProtKB:	A0A8C0K4X6 (UniProtKB/TrEMBL), A0A8C0RWS7 (UniProtKB/TrEMBL), A0A8I3PWG7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MRSRVRPAVPGIRAEVPACTSRMRKRTRTGWGCTGNEPRGRLPGHPTAPAALAGGGDQQRPWQR KPVWRQRARRRGGPPLGWPQFLLPMERAAATRPGPSPGAAENGMGVPPQVLPQAEDWTASLKTE LPSDLELSEEQRLQISKELVDLQITTLQLREQHEAEVFELKNEVLRLESRVLELELQLHGARTD LGHCQELAPGLQHKAPEQGHSTHHRPQVALSAWRGRLGGSPAGAQQRHSEVGTGILVQAQPEDF PAPEHQQQKLGDGVGAQPRGLGLCPDLPQPMVVLGSARIPEPGVSASQPWRTPQLQGEWKRVLE QHKAQKQVLEARVADLGWRLQGARAEARTAGQRLAAQAMVLSACQGQLRQAEVENAQLQLQLKK LNEEYAFQLQRCAQAVAEYTNRAGQVPAAAALRTFLETTLEDIRAAHRSREQQLARAARAYRKR LADLSRRHQELLAAHSVQQVLAGPSGAHGTPKATFEAATSDLESLHLAPALGHPGEDQARLQTE LQKLQAQKGPREASQGGSTLEPQAQEAASWAQIHQKLQDFSRGTQAELERERAQLLVRATMAEE QLSELQEYVDQHLGRYKQEILRLRKLTGTEDAWKVGATPSVKPQHLKTQSR hide sequence

RefSeq Acc Id:	XP_005621798 ⟸ XM_005621741
- Peptide Label:	isoform X3
- UniProtKB:	A0A8C0K4X6 (UniProtKB/TrEMBL), A0A8C0RWS7 (UniProtKB/TrEMBL), A0A8I3PWG7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MRSRVRPAVPGIRAEVPACTSRMRKRTRTGWGCTGNEPRGRLPGHPTAPAALAGGGDQQRPWQR KPVWRQRARRRGGPPLGWPQFLLPMERAAATRPGPSPGAAENVLPQAEDWTASLKTELPSDLEL SEEQRLQISKELVDLQITTLQLREQHEAEVFELKNEVLRLESRVLELELQLHGARTDLGHCQEL APGLQHKAPEQGHSTHHRPQVALSAWRGRLGGSPAGAQQRHSEVGTGILVQAQPEDFPAPEHQQ QKLGDGVGAQPRGLGLCPDLPQPMVVLGSARIPEPGVSASQPWRTPQLQGEWKRVLEQHKAQKQ VLEARVADLGWRLQGARAEARTAGQRLAAQAMGYPRRPQVLSACQGQLRQAEVENAQLQLQLKK LNEEYAFQLQRCAQAVAEYTNRAGQVPAAAALRTFLETTLEDIRAAHRSREQQLARAARAYRKR LADLSRRHQELLAAHSVQQVLAGPSGAHGTPKATFEAATSDLESLHLAPALGHPGEDQARLQTE LQKLQAQKGPREASQGGSTLEPQAQEAASWAQIHQKLQDFSRGTQAELERERAQLLVRATMAEE QLSELQEYVDQHLGRYKQEILRLRKLTGTEDAWKVGATPSVKPQHLKTQSR hide sequence

RefSeq Acc Id:	XP_005621801 ⟸ XM_005621744
- Peptide Label:	isoform X4
- UniProtKB:	A0A8C0K4X6 (UniProtKB/TrEMBL), A0A8C0RWS7 (UniProtKB/TrEMBL), A0A8I3PWG7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MRSRVRPAVPGIRAEVPACTSRMRKRTRTGWGCTGNEPRGRLPGHPTAPAALAGGGDQQRPWQR KPVWRQRARRRGGPPLGWPQFLLPMERAAATRPGPSPGAAENGMGVPPQVLPQAEDWTASLKTE LPSDLELSEEQRLQISKELVDLQITTLQLREQHEAEVFELKNEVLRLESRVLELELQLHGARTD LGHCQELAPGLQHKAPEQGHSTHHRPQVALSAWRGRLGGSPAGAQQRHSEVGTGILVQAQPEDF PAPEHQQQKLGDGVGAQPRGLGLCPDLPQPMVVLGSARIPEPGVSASQPWRTPQLQGEWKRVLE QHKAQKQVLEARVADLGWRLQGARAEARTAGQRLAAQAMGYPRRPQVLSACQGQLRQAEVENAQ LQLQLKKLNEEYAFQLQRCAQAVAEYTNRAGQVPAAAALRTFLETTLEDIRAAHRSREQQLARA ARAYRKRLADLSRRHQELLAAHSVQQVLAGPSGAHGTPKATFEAATSDLESLHLAPALGHPGED QARLQTELQKLQAQKGPREASQGGSTLEPQAQEAASWAQIHQKLQDFSRGTQLTPSPMPGRAGT RAGTATSTGHDGRGATF hide sequence

Ensembl Acc Id:

ENSCAFP00000029014 ⟸ ENSCAFT00000031182

Ensembl Acc Id:

ENSCAFP00000065600 ⟸ ENSCAFT00000077889

Ensembl Acc Id:

ENSCAFP00000049760 ⟸ ENSCAFT00000072840

Ensembl Acc Id:

ENSCAFP00000051587 ⟸ ENSCAFT00000085376

RefSeq Acc Id:	XP_038335543 ⟸ XM_038479615
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_038335540 ⟸ XM_038479612
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038335542 ⟸ XM_038479614
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038335541 ⟸ XM_038479613
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038460942 ⟸ XM_038605014
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_038460939 ⟸ XM_038605011
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038460941 ⟸ XM_038605013
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038460940 ⟸ XM_038605012
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038525617 ⟸ XM_038669689
- Peptide Label:	isoform X4
- UniProtKB:	A0A8C0K4X6 (UniProtKB/TrEMBL), A0A8C0RWS7 (UniProtKB/TrEMBL), A0A8I3PWG7 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038525614 ⟸ XM_038669686
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0K4X6 (UniProtKB/TrEMBL), A0A8C0RWS7 (UniProtKB/TrEMBL), A0A8I3PWG7 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038525616 ⟸ XM_038669688
- Peptide Label:	isoform X3
- UniProtKB:	A0A8C0K4X6 (UniProtKB/TrEMBL), A0A8C0RWS7 (UniProtKB/TrEMBL), A0A8I3PWG7 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038525615 ⟸ XM_038669687
- Peptide Label:	isoform X2
- UniProtKB:	A0A8C0K4X6 (UniProtKB/TrEMBL), A0A8C0RWS7 (UniProtKB/TrEMBL), A0A8I3PWG7 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038396817 ⟸ XM_038540889
- Peptide Label:	isoform X4
- UniProtKB:	A0A8C0K4X6 (UniProtKB/TrEMBL), A0A8C0RWS7 (UniProtKB/TrEMBL), A0A8I3PWG7 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038396814 ⟸ XM_038540886
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0K4X6 (UniProtKB/TrEMBL), A0A8C0RWS7 (UniProtKB/TrEMBL), A0A8I3PWG7 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038396816 ⟸ XM_038540888
- Peptide Label:	isoform X3
- UniProtKB:	A0A8C0K4X6 (UniProtKB/TrEMBL), A0A8C0RWS7 (UniProtKB/TrEMBL), A0A8I3PWG7 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038396815 ⟸ XM_038540887
- Peptide Label:	isoform X2
- UniProtKB:	A0A8C0K4X6 (UniProtKB/TrEMBL), A0A8C0RWS7 (UniProtKB/TrEMBL), A0A8I3PWG7 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSCAFP00845036628 ⟸ ENSCAFT00845046668

Ensembl Acc Id:

ENSCAFP00845036535 ⟸ ENSCAFT00845046540

Protein Domains

DUF4472

Promoters

RGD ID:

13683759

Promoter ID:

EPDNEW_C1828

Type:

single initiation site

Name:

CCDC78_1

Description:

coiled-coil domain containing 78

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	6	39,857,244 - 39,857,304	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCAFG00000019621	Ensembl, UniProtKB/TrEMBL
	ENSCAFG00030013127	UniProtKB/TrEMBL
	ENSCAFG00040003335	UniProtKB/TrEMBL
	ENSCAFG00845026411	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCAFT00000031182.5	UniProtKB/TrEMBL
	ENSCAFT00000077889.2	UniProtKB/TrEMBL
	ENSCAFT00000085376.2	UniProtKB/TrEMBL
	ENSCAFT00030024247.1	UniProtKB/TrEMBL
	ENSCAFT00030024324.1	UniProtKB/TrEMBL
	ENSCAFT00030024408.1	UniProtKB/TrEMBL
	ENSCAFT00040006346.1	UniProtKB/TrEMBL
	ENSCAFT00040006364.1	UniProtKB/TrEMBL
	ENSCAFT00040006386.1	UniProtKB/TrEMBL
	ENSCAFT00845046540	ENTREZGENE
	ENSCAFT00845046540.1	UniProtKB/TrEMBL
	ENSCAFT00845046668.1	UniProtKB/TrEMBL
InterPro	CCDC78	UniProtKB/TrEMBL
	DUF4472	UniProtKB/TrEMBL
NCBI Gene	CCDC78	ENTREZGENE
PANTHER	COILED-COIL DOMAIN-CONTAINING PROTEIN 78	UniProtKB/TrEMBL
	PTHR22106	UniProtKB/TrEMBL
Pfam	DUF4472	UniProtKB/TrEMBL
UniProt	A0A8C0K4X6	ENTREZGENE
	A0A8C0N8X5_CANLF	UniProtKB/TrEMBL
	A0A8C0RJ57_CANLF	UniProtKB/TrEMBL
	A0A8C0RWS7	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I3PPH8_CANLF	UniProtKB/TrEMBL
	A0A8I3PWG7	ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary	A0A8P0PE80	UniProtKB/TrEMBL
VGNC ID	VGNC:38856	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM