CCR4 (C-C motif chemokine receptor 4) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: CCR4 (C-C motif chemokine receptor 4) Canis lupus familiaris
Analyze
Symbol: CCR4
Name: C-C motif chemokine receptor 4
RGD ID: 12235597
Description: ENCODES a protein that exhibits C-C chemokine binding (inferred); C-C chemokine receptor activity (inferred); chemokine receptor activity (inferred); INVOLVED IN chemotaxis (ortholog); homeostasis of number of cells (ortholog); inflammatory response (ortholog); ASSOCIATED WITH adult T-cell leukemia/lymphoma (ortholog); asthma (ortholog); brain ischemia (ortholog); FOUND IN neuronal cell body (ortholog)
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: C-C chemokine receptor type 4; C-C CKR-4; CC chemokine receptor 4; CC-CKR-4; CCR-4
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1233,844,072 - 3,847,770 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl233,844,173 - 3,845,255 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha233,888,073 - 3,889,155 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0234,104,026 - 4,108,984 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl234,104,026 - 4,108,978 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1233,939,579 - 3,940,661 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0234,070,639 - 4,071,721 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0234,040,101 - 4,041,183 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:12459162   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
CCR4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1233,844,072 - 3,847,770 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl233,844,173 - 3,845,255 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha233,888,073 - 3,889,155 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0234,104,026 - 4,108,984 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl234,104,026 - 4,108,978 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1233,939,579 - 3,940,661 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0234,070,639 - 4,071,721 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0234,040,101 - 4,041,183 (-)NCBIUU_Cfam_GSD_1.0
CCR4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38332,951,644 - 32,956,349 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl332,951,644 - 32,956,349 (+)EnsemblGRCh38hg38GRCh38
GRCh37332,993,136 - 32,997,841 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36332,968,070 - 32,971,407 (+)NCBINCBI36Build 36hg18NCBI36
Build 34332,968,069 - 32,971,407NCBI
Celera332,935,667 - 32,939,047 (+)NCBICelera
Cytogenetic Map3p22.3NCBI
HuRef332,932,639 - 32,935,976 (+)NCBIHuRef
CHM1_1332,943,070 - 32,946,407 (+)NCBICHM1_1
T2T-CHM13v2.0332,953,438 - 32,958,143 (+)NCBIT2T-CHM13v2.0
Ccr4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399114,319,384 - 114,334,544 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9114,319,384 - 114,333,984 (-)EnsemblGRCm39 Ensembl
GRCm389114,490,316 - 114,505,476 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9114,490,316 - 114,504,916 (-)EnsemblGRCm38mm10GRCm38
MGSCv379114,399,434 - 114,405,662 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv369114,340,320 - 114,345,244 (-)NCBIMGSCv36mm8
Celera9114,964,557 - 114,970,802 (-)NCBICelera
Cytogenetic Map9F3NCBI
cM Map964.49NCBI
Ccr4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88123,054,505 - 123,060,244 (-)NCBIGRCr8
mRatBN7.28114,176,291 - 114,182,033 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8114,176,974 - 114,178,056 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx8119,794,265 - 119,795,347 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08117,993,504 - 117,994,586 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08115,836,327 - 115,837,409 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.08122,530,152 - 122,535,959 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8122,530,624 - 122,532,070 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08121,843,005 - 121,848,545 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48118,883,148 - 118,884,230 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.18118,902,602 - 118,903,685 (-)NCBI
Celera8113,423,300 - 113,424,382 (-)NCBICelera
Cytogenetic Map8q32NCBI
Ccr4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955421205,297 - 210,944 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955421205,297 - 210,944 (+)NCBIChiLan1.0ChiLan1.0
CCR4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2232,932,455 - 32,940,505 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1332,937,251 - 32,945,223 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0332,882,419 - 32,887,442 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1333,186,607 - 33,189,969 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl333,188,482 - 33,189,564 (+)Ensemblpanpan1.1panPan2
Ccr4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118190,182,355 - 190,183,764 (+)NCBIHiC_Itri_2
SpeTri2.0NW_00493647323,321,167 - 23,323,075 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CCR4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1318,860,730 - 18,865,983 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11318,860,596 - 18,865,987 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
CCR4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11577,435,195 - 77,439,164 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1577,437,265 - 77,438,347 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604150,813,078 - 50,816,866 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ccr4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478810,966,207 - 10,971,180 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478810,965,226 - 10,974,215 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in CCR4
29 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium
Low 5 6 3 10
Below cutoff 5 2 16 6 6 3 2 8 8 6

Sequence


RefSeq Acc Id: ENSCAFT00000007493   ⟹   ENSCAFP00000006935
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl233,844,173 - 3,845,255 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845041609   ⟹   ENSCAFP00845032629
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl234,104,026 - 4,108,978 (-)Ensembl
RefSeq Acc Id: NM_001003020   ⟹   NP_001003020
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1233,844,173 - 3,845,255 (-)NCBI
Dog10K_Boxer_Tasha233,888,073 - 3,889,155 (-)NCBI
ROS_Cfam_1.0234,105,406 - 4,106,488 (-)NCBI
UMICH_Zoey_3.1233,939,579 - 3,940,661 (-)NCBI
UNSW_CanFamBas_1.0234,070,639 - 4,071,721 (-)NCBI
UU_Cfam_GSD_1.0234,040,101 - 4,041,183 (-)NCBI
Sequence:
RefSeq Acc Id: XM_038431586   ⟹   XP_038287514
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0234,104,026 - 4,108,984 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001003020 (Get FASTA)   NCBI Sequence Viewer  
  XP_038287514 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein BAC10546 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCAFP00000006935.2
  ENSCAFP00030042287.1
  ENSCAFP00040018457.1
  ENSCAFP00805026110
  ENSCAFP00845032629
  ENSCAFP00845032629.1
GenBank Protein Q8MJW8 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001003020   ⟸   NM_001003020
- UniProtKB: Q8MJW8 (UniProtKB/Swiss-Prot),   A0A8C0SAL0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000006935   ⟸   ENSCAFT00000007493
RefSeq Acc Id: XP_038287514   ⟸   XM_038431586
- Peptide Label: isoform X1
- UniProtKB: Q8MJW8 (UniProtKB/Swiss-Prot),   A0A8C0SAL0 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845032629   ⟸   ENSCAFT00845041609

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000004658 Ensembl, UniProtKB/Swiss-Prot
  ENSCAFG00030026136 UniProtKB/Swiss-Prot
  ENSCAFG00040011498 UniProtKB/TrEMBL
  ENSCAFG00805018311 UniProtKB/Swiss-Prot
  ENSCAFG00845023571 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSCAFT00000007493.3 UniProtKB/Swiss-Prot
  ENSCAFT00030048328.1 UniProtKB/Swiss-Prot
  ENSCAFT00040021256.1 UniProtKB/TrEMBL
  ENSCAFT00805033247 UniProtKB/Swiss-Prot
  ENSCAFT00845041609 ENTREZGENE
  ENSCAFT00845041609.1 UniProtKB/Swiss-Prot
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Chemokine_CCR4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Chemokine_rcpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GPCR_Rhodpsn UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GPCR_Rhodpsn_7TM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report cfa:403541 UniProtKB/Swiss-Prot
NCBI Gene CCR4 ENTREZGENE
PANTHER C-C CHEMOKINE RECEPTOR TYPE 4 UniProtKB/TrEMBL
  CELL ADHESION MOLECULE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR10489:SF608 UniProtKB/Swiss-Prot
Pfam 7tm_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PRINTS CCCHEMOKINER UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CHEMOKINER4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GPCRRHODOPSN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F1_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART 7TM_GPCR_Srsx UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A8C0SAL0 ENTREZGENE, UniProtKB/TrEMBL
  CCR4_CANLF UniProtKB/Swiss-Prot, ENTREZGENE
VGNC ID VGNC:38913 ENTREZGENE