NAB1 (NGFI-A binding protein 1) - Rat Genome Database
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Gene: NAB1 (NGFI-A binding protein 1) Canis lupus familiaris
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Symbol: NAB1
Name: NGFI-A binding protein 1
RGD ID: 12234055
Description: INVOLVED IN endochondral ossification (inferred); myelination (inferred); negative regulation of transcription, DNA-templated (inferred); ASSOCIATED WITH Neurodevelopmental Disorders (ortholog); INTERACTS WITH enalapril; metoprolol; ranolazine
Type: protein-coding
RefSeq Status: MODEL
Also known as: LOW QUALITY PROTEIN: NGFI-A-binding protein 1; NGFI-A-binding protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl371,207,638 - 1,241,610 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1371,207,619 - 1,243,546 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
enalapril  (EXP)
metoprolol  (EXP)
ranolazine  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleus  (IBA)

Molecular Function

References

Genomics

Comparative Map Data
NAB1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl371,207,638 - 1,241,610 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1371,207,619 - 1,243,546 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
NAB1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl2190,646,746 - 190,692,766 (+)EnsemblGRCh38hg38GRCh38
GRCh382190,648,860 - 190,692,766 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh372191,513,621 - 191,557,492 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362191,222,093 - 191,265,737 (+)NCBINCBI36hg18NCBI36
Build 342191,339,353 - 191,382,997NCBI
Celera2185,108,599 - 185,152,244 (+)NCBI
Cytogenetic Map2q32.2NCBI
HuRef2183,373,298 - 183,416,985 (+)NCBIHuRef
CHM1_12191,519,418 - 191,563,428 (+)NCBICHM1_1
Nab1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39152,495,008 - 52,539,679 (-)NCBIGRCm39mm39
GRCm38152,455,849 - 52,500,712 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl152,457,294 - 52,500,679 (-)EnsemblGRCm38mm10GRCm38
MGSCv37152,512,693 - 52,557,292 (-)NCBIGRCm37mm9NCBIm37
MGSCv36152,402,423 - 52,444,902 (-)NCBImm8
Celera152,994,293 - 53,038,893 (-)NCBICelera
Cytogenetic Map1C1.1NCBI
cM Map126.99NCBI
Nab1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0953,906,073 - 53,945,474 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl953,906,073 - 53,945,473 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0953,571,213 - 53,610,613 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4946,084,090 - 46,124,259 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1946,085,564 - 46,123,090 (+)NCBI
Celera946,720,081 - 46,759,582 (+)NCBICelera
Cytogenetic Map9q22NCBI
Nab1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554038,456,572 - 8,487,749 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554038,456,572 - 8,487,749 (-)NCBIChiLan1.0ChiLan1.0
NAB1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12B195,868,102 - 195,911,497 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B195,868,102 - 195,911,497 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02B77,949,948 - 77,994,888 (+)NCBIMhudiblu_PPA_v0panPan3
Nab1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049365067,503,544 - 7,548,981 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NAB1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1595,248,842 - 95,295,181 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11595,248,703 - 95,295,078 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215106,592,271 - 106,602,122 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NAB1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11076,164,199 - 76,206,898 (+)NCBI
ChlSab1.1 Ensembl1076,174,592 - 76,204,464 (+)Ensembl
Nab1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248545,393,525 - 5,423,580 (-)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 5 4 22 6 6 6 6 12 6 10 6
Low 1 6 2
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSCAFT00000015087   ⟹   ENSCAFP00000013960
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl371,207,638 - 1,241,610 (+)Ensembl
RefSeq Acc Id: XM_022414991   ⟹   XP_022270699
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1371,207,619 - 1,243,546 (+)NCBI
Sequence:
RefSeq Acc Id: XM_545569   ⟹   XP_545569
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1371,207,619 - 1,243,546 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: XP_545569   ⟸   XM_545569
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_022270699   ⟸   XM_022414991
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSCAFP00000013960   ⟸   ENSCAFT00000015087
Protein Domains
Nab1   NCD1   NCD2


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000009496 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSCAFP00000013960 UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000015087 UniProtKB/TrEMBL
Gene3D-CATH 3.40.390.60 UniProtKB/TrEMBL
InterPro Nab1_C UniProtKB/TrEMBL
  NAB_co-repressor_dom UniProtKB/TrEMBL
  NAB_fam UniProtKB/TrEMBL
  Nab_N UniProtKB/TrEMBL
  NCD2_sf UniProtKB/TrEMBL
NCBI Gene NAB1 ENTREZGENE
PANTHER PTHR12623 UniProtKB/TrEMBL
Pfam Nab1 UniProtKB/TrEMBL
  NCD1 UniProtKB/TrEMBL
  NCD2 UniProtKB/TrEMBL
UniProt E2RJE1_CANLF UniProtKB/TrEMBL
VGNC ID VGNC:43600 ENTREZGENE