POLK (DNA polymerase kappa) - Rat Genome Database

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Gene: POLK (DNA polymerase kappa) Canis lupus familiaris
Analyze
Symbol: POLK
Name: DNA polymerase kappa
RGD ID: 12232521
Description: ENCODES a protein that exhibits molecular adaptor activity (ortholog); INVOLVED IN DNA repair (ortholog); PARTICIPATES IN nucleotide excision repair pathway; ASSOCIATED WITH autosomal dominant intellectual developmental disorder 34 (ortholog); epilepsy (ortholog); genetic disease (ortholog); FOUND IN cytosol (inferred); nuclear body (inferred); nucleoplasm (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1330,793,893 - 30,860,240 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl330,712,571 - 30,859,106 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha332,036,886 - 32,103,334 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0330,716,706 - 30,790,391 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl330,717,013 - 30,789,573 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1330,654,748 - 30,720,406 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0330,624,393 - 30,691,008 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0331,002,435 - 31,068,944 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
POLK
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1330,793,893 - 30,860,240 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl330,712,571 - 30,859,106 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha332,036,886 - 32,103,334 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0330,716,706 - 30,790,391 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl330,717,013 - 30,789,573 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1330,654,748 - 30,720,406 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0330,624,393 - 30,691,008 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0331,002,435 - 31,068,944 (-)NCBIUU_Cfam_GSD_1.0
POLK
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38575,510,774 - 75,609,991 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl575,511,845 - 75,609,991 (+)EnsemblGRCh38hg38GRCh38
GRCh37574,807,716 - 74,905,816 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36574,843,337 - 74,930,889 (+)NCBINCBI36Build 36hg18NCBI36
Build 34574,843,336 - 74,930,889NCBI
Celera570,701,054 - 70,789,056 (+)NCBICelera
Cytogenetic Map5q13.3NCBI
HuRef570,012,832 - 70,100,786 (+)NCBIHuRef
CHM1_1574,240,383 - 74,328,367 (+)NCBICHM1_1
T2T-CHM13v2.0575,992,960 - 76,091,061 (+)NCBIT2T-CHM13v2.0
Polk
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391396,617,195 - 96,679,087 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1396,617,198 - 96,679,087 (-)EnsemblGRCm39 Ensembl
GRCm381396,480,687 - 96,542,579 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1396,480,690 - 96,542,579 (-)EnsemblGRCm38mm10GRCm38
MGSCv371397,250,644 - 97,312,440 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361397,581,388 - 97,643,184 (-)NCBIMGSCv36mm8
Celera13100,116,241 - 100,179,060 (-)NCBICelera
Cytogenetic Map13D1NCBI
cM Map1350.56NCBI
Polk
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8229,556,831 - 29,616,960 (-)NCBIGRCr8
mRatBN7.2227,822,228 - 27,882,331 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl227,822,679 - 27,882,313 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx234,870,198 - 34,930,018 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0232,970,284 - 33,030,097 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0227,783,088 - 27,844,202 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0227,305,718 - 27,364,906 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl227,305,728 - 27,364,906 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0246,417,808 - 46,477,594 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4226,952,022 - 27,012,088 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1226,875,113 - 26,875,624 (-)NCBI
Celera223,868,651 - 23,928,707 (-)NCBICelera
Cytogenetic Map2q12NCBI
Polk
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542525,161,222 - 25,228,524 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542525,164,749 - 25,228,064 (-)NCBIChiLan1.0ChiLan1.0
POLK
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2439,701,845 - 39,789,856 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1537,855,476 - 37,944,159 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0539,700,659 - 39,788,727 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1540,313,114 - 40,365,841 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl540,311,526 - 40,401,003 (-)Ensemblpanpan1.1panPan2
Polk
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213189,596,918 - 189,658,957 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049365491,199,810 - 1,261,889 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
POLK
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl284,538,056 - 84,619,485 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1284,555,648 - 84,619,490 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2286,174,657 - 86,250,880 (+)NCBISscrofa10.2Sscrofa10.2susScr3
POLK
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1469,842,887 - 69,948,285 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl469,872,752 - 69,948,249 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604918,628,236 - 18,719,870 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Polk
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249052,800,693 - 2,844,516 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046249052,801,160 - 2,844,549 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in POLK
662 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 1 1 8
Low 5 5 21 6 6 6 6 6 11 10 6
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_014112268 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_014112269 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_014112270 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_014112271 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_014112272 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_014112274 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022416785 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022416786 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038471596 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038471597 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038471598 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038471599 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038471600 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038471601 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038471602 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038471603 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038471604 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038472405 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038532528 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038532529 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038532530 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038532531 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038532532 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038532533 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038532534 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038532535 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038596811 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038596812 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038596813 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038596814 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038596815 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038596816 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038596817 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038596818 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038596819 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038661021 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038661022 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038661023 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038661024 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038661025 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038661026 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038661027 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038661029 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038661030 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000041 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000074 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000011 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCAFT00000014935   ⟹   ENSCAFP00000013822
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl330,796,277 - 30,837,415 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000046862   ⟹   ENSCAFP00000040942
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl330,796,277 - 30,837,415 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000062329   ⟹   ENSCAFP00000059492
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl330,712,571 - 30,837,415 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000065047   ⟹   ENSCAFP00000061220
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl330,796,277 - 30,837,415 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000072314   ⟹   ENSCAFP00000058034
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl330,796,657 - 30,859,106 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845020103   ⟹   ENSCAFP00845015755
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl330,717,013 - 30,789,548 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845020215   ⟹   ENSCAFP00845015846
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl330,717,013 - 30,789,548 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845020240   ⟹   ENSCAFP00845015867
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl330,717,495 - 30,789,573 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845020262   ⟹   ENSCAFP00845015883
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl330,719,472 - 30,789,548 (-)Ensembl
RefSeq Acc Id: XM_014112268   ⟹   XP_013967743
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1330,793,893 - 30,859,485 (-)NCBI
Dog10K_Boxer_Tasha332,036,886 - 32,102,512 (-)NCBI
Sequence:
RefSeq Acc Id: XM_014112269   ⟹   XP_013967744
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1330,793,893 - 30,859,485 (-)NCBI
Dog10K_Boxer_Tasha332,036,886 - 32,102,512 (-)NCBI
Sequence:
RefSeq Acc Id: XM_014112270   ⟹   XP_013967745
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1330,793,893 - 30,859,616 (-)NCBI
Dog10K_Boxer_Tasha332,036,886 - 32,102,604 (-)NCBI
Sequence:
RefSeq Acc Id: XM_014112271   ⟹   XP_013967746
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1330,793,893 - 30,860,240 (-)NCBI
Dog10K_Boxer_Tasha332,036,886 - 32,103,334 (-)NCBI
Sequence:
RefSeq Acc Id: XM_014112272   ⟹   XP_013967747
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1330,793,893 - 30,859,486 (-)NCBI
Dog10K_Boxer_Tasha332,036,886 - 32,102,515 (-)NCBI
Sequence:
RefSeq Acc Id: XM_014112274   ⟹   XP_013967749
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1330,793,893 - 30,859,486 (-)NCBI
Dog10K_Boxer_Tasha332,036,886 - 32,102,517 (-)NCBI
Sequence:
RefSeq Acc Id: XM_022416785   ⟹   XP_022272493
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1330,793,893 - 30,859,485 (-)NCBI
Dog10K_Boxer_Tasha332,036,886 - 32,102,513 (-)NCBI
Sequence:
RefSeq Acc Id: XM_022416786   ⟹   XP_022272494
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1330,793,893 - 30,849,550 (-)NCBI
Dog10K_Boxer_Tasha332,036,886 - 32,092,536 (-)NCBI
Sequence:
RefSeq Acc Id: XM_038471596   ⟹   XP_038327524
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1330,654,748 - 30,719,518 (-)NCBI
RefSeq Acc Id: XM_038471597   ⟹   XP_038327525
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1330,654,748 - 30,719,518 (-)NCBI
RefSeq Acc Id: XM_038471598   ⟹   XP_038327526
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1330,654,748 - 30,720,406 (-)NCBI
RefSeq Acc Id: XM_038471599   ⟹   XP_038327527
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1330,654,748 - 30,719,666 (-)NCBI
RefSeq Acc Id: XM_038471600   ⟹   XP_038327528
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1330,654,748 - 30,719,518 (-)NCBI
RefSeq Acc Id: XM_038471601   ⟹   XP_038327529
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1330,654,748 - 30,709,612 (-)NCBI
RefSeq Acc Id: XM_038471602   ⟹   XP_038327530
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1330,654,748 - 30,719,518 (-)NCBI
RefSeq Acc Id: XM_038471603   ⟹   XP_038327531
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1330,654,748 - 30,719,519 (-)NCBI
RefSeq Acc Id: XM_038471604   ⟹   XP_038327532
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1330,654,748 - 30,719,518 (-)NCBI
RefSeq Acc Id: XM_038472405   ⟹   XP_038328333
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha332,036,886 - 32,102,521 (-)NCBI
RefSeq Acc Id: XM_038532528   ⟹   XP_038388456
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0331,002,435 - 31,068,055 (-)NCBI
RefSeq Acc Id: XM_038532529   ⟹   XP_038388457
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0331,002,435 - 31,068,055 (-)NCBI
RefSeq Acc Id: XM_038532530   ⟹   XP_038388458
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0331,002,435 - 31,068,944 (-)NCBI
RefSeq Acc Id: XM_038532531   ⟹   XP_038388459
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0331,002,435 - 31,068,207 (-)NCBI
RefSeq Acc Id: XM_038532532   ⟹   XP_038388460
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0331,002,435 - 31,068,055 (-)NCBI
RefSeq Acc Id: XM_038532533   ⟹   XP_038388461
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0331,002,435 - 31,058,141 (-)NCBI
RefSeq Acc Id: XM_038532534   ⟹   XP_038388462
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0331,002,435 - 31,068,056 (-)NCBI
RefSeq Acc Id: XM_038532535   ⟹   XP_038388463
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0331,002,435 - 31,068,056 (-)NCBI
RefSeq Acc Id: XM_038596811   ⟹   XP_038452739
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0330,624,393 - 30,690,123 (-)NCBI
RefSeq Acc Id: XM_038596812   ⟹   XP_038452740
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0330,624,393 - 30,690,123 (-)NCBI
RefSeq Acc Id: XM_038596813   ⟹   XP_038452741
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0330,624,393 - 30,691,008 (-)NCBI
RefSeq Acc Id: XM_038596814   ⟹   XP_038452742
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0330,624,393 - 30,690,278 (-)NCBI
RefSeq Acc Id: XM_038596815   ⟹   XP_038452743
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0330,624,393 - 30,690,123 (-)NCBI
RefSeq Acc Id: XM_038596816   ⟹   XP_038452744
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0330,624,393 - 30,680,214 (-)NCBI
RefSeq Acc Id: XM_038596817   ⟹   XP_038452745
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0330,624,393 - 30,690,123 (-)NCBI
RefSeq Acc Id: XM_038596818   ⟹   XP_038452746
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0330,624,393 - 30,690,124 (-)NCBI
RefSeq Acc Id: XM_038596819   ⟹   XP_038452747
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0330,624,393 - 30,690,123 (-)NCBI
RefSeq Acc Id: XM_038661021   ⟹   XP_038516949
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0330,716,706 - 30,789,615 (-)NCBI
RefSeq Acc Id: XM_038661022   ⟹   XP_038516950
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0330,716,706 - 30,789,615 (-)NCBI
RefSeq Acc Id: XM_038661023   ⟹   XP_038516951
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0330,716,706 - 30,790,391 (-)NCBI
RefSeq Acc Id: XM_038661024   ⟹   XP_038516952
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0330,716,706 - 30,789,307 (-)NCBI
RefSeq Acc Id: XM_038661025   ⟹   XP_038516953
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0330,716,706 - 30,789,645 (-)NCBI
RefSeq Acc Id: XM_038661026   ⟹   XP_038516954
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0330,716,706 - 30,772,407 (-)NCBI
RefSeq Acc Id: XM_038661027   ⟹   XP_038516955
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0330,716,706 - 30,789,616 (-)NCBI
RefSeq Acc Id: XM_038661029   ⟹   XP_038516957
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0330,716,706 - 30,789,619 (-)NCBI
RefSeq Acc Id: XM_038661030   ⟹   XP_038516958
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0330,716,706 - 30,789,617 (-)NCBI
Protein Sequences
Protein RefSeqs XP_013967743 (Get FASTA)   NCBI Sequence Viewer  
  XP_013967744 (Get FASTA)   NCBI Sequence Viewer  
  XP_013967745 (Get FASTA)   NCBI Sequence Viewer  
  XP_013967746 (Get FASTA)   NCBI Sequence Viewer  
  XP_013967747 (Get FASTA)   NCBI Sequence Viewer  
  XP_013967749 (Get FASTA)   NCBI Sequence Viewer  
  XP_022272493 (Get FASTA)   NCBI Sequence Viewer  
  XP_022272494 (Get FASTA)   NCBI Sequence Viewer  
  XP_038327524 (Get FASTA)   NCBI Sequence Viewer  
  XP_038327525 (Get FASTA)   NCBI Sequence Viewer  
  XP_038327526 (Get FASTA)   NCBI Sequence Viewer  
  XP_038327527 (Get FASTA)   NCBI Sequence Viewer  
  XP_038327528 (Get FASTA)   NCBI Sequence Viewer  
  XP_038327529 (Get FASTA)   NCBI Sequence Viewer  
  XP_038327530 (Get FASTA)   NCBI Sequence Viewer  
  XP_038327531 (Get FASTA)   NCBI Sequence Viewer  
  XP_038327532 (Get FASTA)   NCBI Sequence Viewer  
  XP_038328333 (Get FASTA)   NCBI Sequence Viewer  
  XP_038388456 (Get FASTA)   NCBI Sequence Viewer  
  XP_038388457 (Get FASTA)   NCBI Sequence Viewer  
  XP_038388458 (Get FASTA)   NCBI Sequence Viewer  
  XP_038388459 (Get FASTA)   NCBI Sequence Viewer  
  XP_038388460 (Get FASTA)   NCBI Sequence Viewer  
  XP_038388461 (Get FASTA)   NCBI Sequence Viewer  
  XP_038388462 (Get FASTA)   NCBI Sequence Viewer  
  XP_038388463 (Get FASTA)   NCBI Sequence Viewer  
  XP_038452739 (Get FASTA)   NCBI Sequence Viewer  
  XP_038452740 (Get FASTA)   NCBI Sequence Viewer  
  XP_038452741 (Get FASTA)   NCBI Sequence Viewer  
  XP_038452742 (Get FASTA)   NCBI Sequence Viewer  
  XP_038452743 (Get FASTA)   NCBI Sequence Viewer  
  XP_038452744 (Get FASTA)   NCBI Sequence Viewer  
  XP_038452745 (Get FASTA)   NCBI Sequence Viewer  
  XP_038452746 (Get FASTA)   NCBI Sequence Viewer  
  XP_038452747 (Get FASTA)   NCBI Sequence Viewer  
  XP_038516949 (Get FASTA)   NCBI Sequence Viewer  
  XP_038516950 (Get FASTA)   NCBI Sequence Viewer  
  XP_038516951 (Get FASTA)   NCBI Sequence Viewer  
  XP_038516952 (Get FASTA)   NCBI Sequence Viewer  
  XP_038516953 (Get FASTA)   NCBI Sequence Viewer  
  XP_038516954 (Get FASTA)   NCBI Sequence Viewer  
  XP_038516955 (Get FASTA)   NCBI Sequence Viewer  
  XP_038516957 (Get FASTA)   NCBI Sequence Viewer  
  XP_038516958 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCAFP00000013822.4
  ENSCAFP00000040942.2
  ENSCAFP00030015266.1
  ENSCAFP00030015362.1
  ENSCAFP00030015417.1
  ENSCAFP00040003831.1
  ENSCAFP00845015755
  ENSCAFP00845015755.1
  ENSCAFP00845015846.1
  ENSCAFP00845015867
  ENSCAFP00845015867.1
  ENSCAFP00845015883.1
Reference Protein Sequences
RefSeq Acc Id: XP_013967746   ⟸   XM_014112271
- Peptide Label: isoform X1
- UniProtKB: A0A8C0LT88 (UniProtKB/TrEMBL),   A0A8C0N3I6 (UniProtKB/TrEMBL),   A0A8I3NI78 (UniProtKB/TrEMBL),   A0A8C0PTJ1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013967745   ⟸   XM_014112270
- Peptide Label: isoform X1
- UniProtKB: A0A8C0LT88 (UniProtKB/TrEMBL),   A0A8C0N3I6 (UniProtKB/TrEMBL),   A0A8I3NI78 (UniProtKB/TrEMBL),   A0A8C0PTJ1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013967744   ⟸   XM_014112269
- Peptide Label: isoform X1
- UniProtKB: A0A8C0LT88 (UniProtKB/TrEMBL),   A0A8C0N3I6 (UniProtKB/TrEMBL),   A0A8I3NI78 (UniProtKB/TrEMBL),   A0A8C0PTJ1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013967749   ⟸   XM_014112274
- Peptide Label: isoform X4
- UniProtKB: A0A8C0PTJ1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013967747   ⟸   XM_014112272
- Peptide Label: isoform X2
- UniProtKB: A0A8I3NJG1 (UniProtKB/TrEMBL),   A0A8P0SUW1 (UniProtKB/TrEMBL),   A0A8C0PTJ1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013967743   ⟸   XM_014112268
- Peptide Label: isoform X1
- UniProtKB: A0A8C0LT88 (UniProtKB/TrEMBL),   A0A8C0N3I6 (UniProtKB/TrEMBL),   A0A8I3NI78 (UniProtKB/TrEMBL),   A0A8C0PTJ1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_022272493   ⟸   XM_022416785
- Peptide Label: isoform X1
- UniProtKB: A0A8C0LT88 (UniProtKB/TrEMBL),   A0A8C0N3I6 (UniProtKB/TrEMBL),   A0A8I3NI78 (UniProtKB/TrEMBL),   A0A8C0PTJ1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_022272494   ⟸   XM_022416786
- Peptide Label: isoform X1
- UniProtKB: A0A8C0LT88 (UniProtKB/TrEMBL),   A0A8C0N3I6 (UniProtKB/TrEMBL),   A0A8I3NI78 (UniProtKB/TrEMBL),   A0A8C0PTJ1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000013822   ⟸   ENSCAFT00000014935
RefSeq Acc Id: ENSCAFP00000059492   ⟸   ENSCAFT00000062329
RefSeq Acc Id: ENSCAFP00000058034   ⟸   ENSCAFT00000072314
RefSeq Acc Id: ENSCAFP00000061220   ⟸   ENSCAFT00000065047
RefSeq Acc Id: ENSCAFP00000040942   ⟸   ENSCAFT00000046862
RefSeq Acc Id: XP_038327526   ⟸   XM_038471598
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038327527   ⟸   XM_038471599
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038327531   ⟸   XM_038471603
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038327528   ⟸   XM_038471600
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038327525   ⟸   XM_038471597
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038327532   ⟸   XM_038471604
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038327530   ⟸   XM_038471602
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038327524   ⟸   XM_038471596
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038327529   ⟸   XM_038471601
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038452741   ⟸   XM_038596813
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038452742   ⟸   XM_038596814
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038452746   ⟸   XM_038596818
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038452743   ⟸   XM_038596815
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038452740   ⟸   XM_038596812
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038452747   ⟸   XM_038596819
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038452745   ⟸   XM_038596817
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038452739   ⟸   XM_038596811
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038452744   ⟸   XM_038596816
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038516951   ⟸   XM_038661023
- Peptide Label: isoform X1
- UniProtKB: A0A8C0LT88 (UniProtKB/TrEMBL),   A0A8C0N3I6 (UniProtKB/TrEMBL),   A0A8I3NI78 (UniProtKB/TrEMBL),   A0A8C0PTJ1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038516953   ⟸   XM_038661025
- Peptide Label: isoform X1
- UniProtKB: A0A8C0LT88 (UniProtKB/TrEMBL),   A0A8C0N3I6 (UniProtKB/TrEMBL),   A0A8I3NI78 (UniProtKB/TrEMBL),   A0A8C0PTJ1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038516957   ⟸   XM_038661029
- Peptide Label: isoform X3
- UniProtKB: A0A8C0PTJ1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038516958   ⟸   XM_038661030
- Peptide Label: isoform X4
- UniProtKB: A0A8C0PTJ1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038516955   ⟸   XM_038661027
- Peptide Label: isoform X2
- UniProtKB: A0A8I3NJG1 (UniProtKB/TrEMBL),   A0A8P0SUW1 (UniProtKB/TrEMBL),   A0A8C0PTJ1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038516950   ⟸   XM_038661022
- Peptide Label: isoform X1
- UniProtKB: A0A8C0LT88 (UniProtKB/TrEMBL),   A0A8C0N3I6 (UniProtKB/TrEMBL),   A0A8I3NI78 (UniProtKB/TrEMBL),   A0A8C0PTJ1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038516949   ⟸   XM_038661021
- Peptide Label: isoform X1
- UniProtKB: A0A8C0LT88 (UniProtKB/TrEMBL),   A0A8C0N3I6 (UniProtKB/TrEMBL),   A0A8I3NI78 (UniProtKB/TrEMBL),   A0A8C0PTJ1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038516952   ⟸   XM_038661024
- Peptide Label: isoform X1
- UniProtKB: A0A8C0LT88 (UniProtKB/TrEMBL),   A0A8C0N3I6 (UniProtKB/TrEMBL),   A0A8I3NI78 (UniProtKB/TrEMBL),   A0A8C0PTJ1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038516954   ⟸   XM_038661026
- Peptide Label: isoform X1
- UniProtKB: A0A8C0LT88 (UniProtKB/TrEMBL),   A0A8C0N3I6 (UniProtKB/TrEMBL),   A0A8I3NI78 (UniProtKB/TrEMBL),   A0A8C0PTJ1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038328333   ⟸   XM_038472405
- Peptide Label: isoform X3
- UniProtKB: A0A8C0PTJ1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038388458   ⟸   XM_038532530
- Peptide Label: isoform X3
- UniProtKB: A0A8C0PTJ1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038388459   ⟸   XM_038532531
- Peptide Label: isoform X3
- UniProtKB: A0A8C0PTJ1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038388463   ⟸   XM_038532535
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038388462   ⟸   XM_038532534
- Peptide Label: isoform X5
- UniProtKB: A0A8C0PTJ1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038388460   ⟸   XM_038532532
- Peptide Label: isoform X3
- UniProtKB: A0A8C0PTJ1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038388457   ⟸   XM_038532529
- Peptide Label: isoform X3
- UniProtKB: A0A8C0PTJ1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038388456   ⟸   XM_038532528
- Peptide Label: isoform X3
- UniProtKB: A0A8C0PTJ1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038388461   ⟸   XM_038532533
- Peptide Label: isoform X3
- UniProtKB: A0A8C0PTJ1 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845015867   ⟸   ENSCAFT00845020240
RefSeq Acc Id: ENSCAFP00845015883   ⟸   ENSCAFT00845020262
RefSeq Acc Id: ENSCAFP00845015755   ⟸   ENSCAFT00845020103
RefSeq Acc Id: ENSCAFP00845015846   ⟸   ENSCAFT00845020215
Protein Domains
UBZ4-type   UmuC


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000009384 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030009391 UniProtKB/TrEMBL
  ENSCAFG00040002344 UniProtKB/TrEMBL
  ENSCAFG00845011326 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000014935.5 UniProtKB/TrEMBL
  ENSCAFT00000046862.4 UniProtKB/TrEMBL
  ENSCAFT00030017481.1 UniProtKB/TrEMBL
  ENSCAFT00030017586.1 UniProtKB/TrEMBL
  ENSCAFT00030017653.1 UniProtKB/TrEMBL
  ENSCAFT00040004464.1 UniProtKB/TrEMBL
  ENSCAFT00845020103 ENTREZGENE
  ENSCAFT00845020103.1 UniProtKB/TrEMBL
  ENSCAFT00845020215.1 UniProtKB/TrEMBL
  ENSCAFT00845020240 ENTREZGENE
  ENSCAFT00845020240.1 UniProtKB/TrEMBL
  ENSCAFT00845020262.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.150.810 UniProtKB/TrEMBL
  3.30.1490.100 UniProtKB/TrEMBL
  3.30.70.270 UniProtKB/TrEMBL
  3.40.1170.60 UniProtKB/TrEMBL
  5' to 3' exonuclease, C-terminal subdomain UniProtKB/TrEMBL
  Classic Zinc Finger UniProtKB/TrEMBL
InterPro DNA/RNA_pol_sf UniProtKB/TrEMBL
  DNA_pol_Y-fam_lit_finger_sf UniProtKB/TrEMBL
  DNA_pol_Y-fam_little_finger UniProtKB/TrEMBL
  DNApol_IV UniProtKB/TrEMBL
  PolY_HhH_motif UniProtKB/TrEMBL
  Rad18_UBZ4 UniProtKB/TrEMBL
  Rev_trsase/Diguanyl_cyclase UniProtKB/TrEMBL
  UmuC UniProtKB/TrEMBL
KEGG Report cfa:479180 UniProtKB/TrEMBL
NCBI Gene POLK ENTREZGENE
PANTHER DNA POLYMERASE KAPPA UniProtKB/TrEMBL
  DNA REPAIR POLYMERASE UMUC / TRANSFERASE FAMILY MEMBER UniProtKB/TrEMBL
Pfam IMS UniProtKB/TrEMBL
  IMS_C UniProtKB/TrEMBL
  IMS_HHH UniProtKB/TrEMBL
PIRSF DPol_eta UniProtKB/TrEMBL
PROSITE UMUC UniProtKB/TrEMBL
  ZF_UBZ4 UniProtKB/TrEMBL
SMART ZnF_Rad18 UniProtKB/TrEMBL
Superfamily-SCOP SSF100879 UniProtKB/TrEMBL
  SSF56672 UniProtKB/TrEMBL
UniProt A0A8C0LT88 ENTREZGENE
  A0A8C0MQN3_CANLF UniProtKB/TrEMBL
  A0A8C0MTX4_CANLF UniProtKB/TrEMBL
  A0A8C0N3I6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0PTJ1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3NDH8_CANLF UniProtKB/TrEMBL
  A0A8I3NDJ8_CANLF UniProtKB/TrEMBL
  A0A8I3NI78 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3NJG1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0SUW1 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:44785 ENTREZGENE